Wall clock time and date at job start Tue Mar 31 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35886 * 117.00196 * 2 1 4 4 C 1.39844 * 119.56643 * 0.02562 * 3 2 1 5 5 C 1.35992 * 120.93219 * 180.23269 * 4 3 2 6 6 C 1.40594 * 119.72570 * 359.50308 * 5 4 3 7 7 C 1.40521 * 121.22011 * 180.22351 * 6 5 4 8 8 C 1.36102 * 119.67576 * 180.26999 * 7 6 5 9 9 C 1.50701 * 119.50577 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47200 * 89.99759 * 9 8 7 11 11 C 1.34778 * 119.99673 * 179.97438 * 10 9 8 12 12 O 1.21579 * 120.00428 * 354.82366 * 11 10 9 13 13 N 1.34775 * 119.99555 * 174.82028 * 11 10 9 14 14 C 1.46499 * 119.99772 * 184.86932 * 13 11 10 15 15 C 1.50702 * 109.47156 * 89.99888 * 14 13 11 16 16 H 1.07996 * 120.00359 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99972 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99878 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47251 * 59.99878 * 19 17 15 21 21 H 1.48495 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47019 * 300.00161 * 19 17 15 23 23 C 1.46499 * 120.00338 * 4.86409 * 13 11 10 24 24 C 1.53005 * 117.50319 * 193.36158 * 23 13 11 25 25 C 1.52999 * 117.49778 * 124.70282 * 23 13 11 26 26 C 1.39375 * 120.99497 * 359.97438 * 8 7 6 27 27 C 1.36092 * 120.97845 * 0.02562 * 26 8 7 28 28 C 1.40576 * 119.65488 * 359.97438 * 27 26 8 29 29 C 1.36572 * 119.56603 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47244 * 59.99419 * 1 2 3 31 31 H 1.08998 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47042 * 300.00190 * 1 2 3 33 33 H 1.07994 * 119.53746 * 359.95243 * 4 3 2 34 34 H 1.07991 * 120.13628 * 179.72449 * 5 4 3 35 35 H 1.07999 * 120.16510 * 0.28602 * 7 6 5 36 36 H 1.09004 * 109.46943 * 209.99409 * 9 8 7 37 37 H 1.08993 * 109.47015 * 329.99528 * 9 8 7 38 38 H 0.97003 * 119.99813 * 359.97438 * 10 9 8 39 39 H 1.09001 * 109.47270 * 209.99817 * 14 13 11 40 40 H 1.08998 * 109.47522 * 329.99875 * 14 13 11 41 41 H 0.97004 * 119.99839 * 179.97438 * 18 17 15 42 42 H 1.08999 * 115.54889 * 339.03636 * 23 13 11 43 43 H 1.09006 * 117.49604 * 0.02562 * 24 23 13 44 44 H 1.08991 * 117.50210 * 145.02144 * 24 23 13 45 45 H 1.09006 * 117.49974 * 214.98394 * 25 23 13 46 46 H 1.09002 * 117.49830 * 359.97438 * 25 23 13 47 47 H 1.07999 * 119.51489 * 180.02562 * 26 8 7 48 48 H 1.07998 * 120.17707 * 180.02562 * 27 26 8 49 49 H 1.08004 * 120.18920 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2754 2.3778 0.0005 5 6 1.8638 3.6038 -0.0042 6 6 3.2661 3.7041 0.0009 7 6 3.9069 4.9547 0.0009 8 6 5.2666 5.0152 0.0003 9 6 5.9498 6.3585 -0.0002 10 7 6.1717 6.7940 1.3808 11 6 6.7730 7.9749 1.6265 12 8 7.2156 8.6349 0.7064 13 7 6.8837 8.4242 2.8924 14 6 7.4404 9.7543 3.1515 15 6 6.3290 10.7721 3.1547 16 1 5.3099 10.4595 2.9816 17 6 6.6131 12.1025 3.3799 18 7 7.8539 12.4830 3.5922 19 14 5.2354 13.3640 3.3846 20 1 4.2547 13.0220 4.4461 21 1 5.7995 14.7120 3.6484 22 1 4.5566 13.3606 2.0639 23 6 6.4472 7.5826 4.0092 24 6 6.3016 8.2470 5.3798 25 6 7.4655 7.2893 5.1128 26 6 6.0367 3.8535 0.0002 27 6 5.4512 2.6250 0.0002 28 6 4.0492 2.5227 0.0008 29 6 3.4102 1.2718 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.1980 2.3044 0.0002 34 1 1.2564 4.4967 -0.0082 35 1 3.3234 5.8635 0.0017 36 1 6.9077 6.2787 -0.5144 37 1 5.3211 7.0856 -0.5140 38 1 5.8859 6.2325 2.1183 39 1 7.9385 9.7572 4.1210 40 1 8.1603 10.0051 2.3724 41 1 8.0539 13.4190 3.7502 42 1 5.7396 6.7935 3.7547 43 1 6.5301 9.3105 5.4504 44 1 5.4985 7.8948 6.0270 45 1 7.4276 6.3074 5.5846 46 1 8.4603 7.7223 5.0077 47 1 7.1140 3.9294 0.0002 48 1 6.0605 1.7333 0.0005 49 1 3.9946 0.3635 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072273219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:32 Heat of formation + Delta-G solvation = -6.493967 kcal Electronic energy + Delta-G solvation = -30131.780188 eV Core-core repulsion = 26024.474536 eV Total energy + Delta-G solvation = -4107.305652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69604 -41.12339 -39.93151 -38.41080 -37.20102 -35.47719 -35.01136 -33.85992 -33.52660 -31.29027 -30.66716 -29.35153 -28.08062 -26.56893 -24.88035 -24.26284 -23.45077 -23.09795 -22.99010 -22.60988 -20.55548 -19.47635 -19.13525 -18.54237 -18.08075 -17.72425 -17.21497 -16.65873 -16.60416 -16.48660 -16.34406 -15.76986 -15.56533 -15.45523 -15.34697 -15.08764 -14.49808 -14.41228 -14.33720 -14.06267 -13.91761 -13.68443 -13.40328 -13.30149 -13.17103 -12.81294 -12.72368 -12.58590 -12.36157 -12.24928 -12.20120 -12.18842 -12.06868 -11.65639 -11.63918 -11.51038 -11.45300 -10.95305 -10.72004 -10.60975 -10.11441 -9.37510 -9.12131 -8.65975 -8.17463 -6.32157 -0.44359 -0.02912 1.06504 1.37217 1.41450 1.48564 1.73238 2.10956 2.23743 2.37314 2.41165 3.00741 3.10472 3.13123 3.22556 3.56723 3.68196 3.85415 3.93120 3.95950 4.02030 4.13808 4.19973 4.27315 4.30169 4.32972 4.41443 4.41983 4.55817 4.65238 4.72266 4.81255 4.82972 4.86371 4.89906 4.98067 5.04199 5.12330 5.23126 5.25026 5.28480 5.29903 5.43224 5.50484 5.55161 5.59686 5.64441 5.73555 5.83235 5.96495 6.10486 6.17730 6.41369 6.76031 7.19693 7.34088 7.74571 8.88057 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002044 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.894315 B =13696.503448 C =14063.183700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.124 3.876 4 C -0.194 4.194 5 C -0.064 4.064 6 C -0.100 4.100 7 C -0.071 4.071 8 C -0.113 4.113 9 C 0.183 3.817 10 N -0.729 5.729 11 C 0.700 3.300 12 O -0.640 6.640 13 N -0.593 5.593 14 C 0.279 3.721 15 C -0.531 4.531 16 H 0.050 0.950 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.965 3.035 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.059 3.941 24 C -0.179 4.179 25 C -0.180 4.180 26 C -0.090 4.090 27 C -0.116 4.116 28 C -0.020 4.020 29 C -0.171 4.171 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.136 0.864 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.026 0.974 40 H -0.005 1.005 41 H 0.266 0.734 42 H 0.146 0.854 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.135 0.865 46 H 0.072 0.928 47 H 0.135 0.865 48 H 0.150 0.850 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 -28.021 -3.712 32.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.078 3.922 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.100 4.100 7 C -0.090 4.090 8 C -0.113 4.113 9 C 0.059 3.941 10 N -0.388 5.388 11 C 0.402 3.598 12 O -0.522 6.522 13 N -0.326 5.326 14 C 0.158 3.842 15 C -0.570 4.570 16 H 0.069 0.931 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.045 4.045 24 C -0.217 4.217 25 C -0.219 4.219 26 C -0.109 4.109 27 C -0.134 4.134 28 C -0.020 4.020 29 C -0.190 4.190 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.044 0.956 40 H 0.013 0.987 41 H 0.075 0.925 42 H 0.164 0.836 43 H 0.095 0.905 44 H 0.144 0.856 45 H 0.153 0.847 46 H 0.091 0.909 47 H 0.153 0.847 48 H 0.168 0.832 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.738 -27.561 -4.350 31.555 hybrid contribution -0.453 1.161 0.169 1.258 sum -15.191 -26.400 -4.181 30.744 Atomic orbital electron populations 1.23361 0.76437 1.05636 1.02346 1.86072 1.23513 1.26743 1.88599 1.18876 0.92423 0.84804 0.96076 1.21302 1.01555 0.91755 1.06552 1.21195 0.93030 0.98552 0.95431 1.18218 0.94221 0.92918 1.04629 1.21080 0.94013 0.97081 0.96840 1.19399 0.93877 0.93833 1.04204 1.19970 0.99700 0.92190 0.82210 1.45102 1.64700 1.19876 1.09111 1.16051 0.79192 0.81644 0.82949 1.90839 1.56325 1.60321 1.44693 1.46866 1.64616 1.17564 1.03545 1.18587 0.93179 0.77592 0.94856 1.21593 0.93972 0.92864 1.48560 0.93136 1.25828 0.98187 1.00388 0.94769 1.70051 1.19907 1.17482 1.49371 0.85504 0.79100 0.77713 0.78698 1.18505 1.20466 1.20433 1.21796 1.02080 0.97467 0.83174 1.23314 1.01642 0.99103 0.97659 1.23439 0.94438 1.01784 1.02242 1.20928 1.00703 0.91491 0.97742 1.21157 0.92906 0.98492 1.00861 1.17995 0.94034 0.92059 0.97915 1.20304 0.92214 0.97683 1.08749 0.91592 0.86418 0.91616 0.82812 0.83058 0.84640 0.91650 0.92191 0.75679 0.95619 0.98718 0.92512 0.83642 0.90471 0.85588 0.84746 0.90924 0.84700 0.83241 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.80 113.37 1.11 1.23 16 2 O -0.34 -5.18 10.47 -92.26 -0.97 -6.14 16 3 C 0.12 2.09 6.63 22.27 0.15 2.24 16 4 C -0.19 -2.73 8.93 22.14 0.20 -2.53 16 5 C -0.06 -1.00 9.76 22.32 0.22 -0.78 16 6 C -0.10 -1.92 5.74 -21.28 -0.12 -2.05 16 7 C -0.07 -1.44 9.37 22.33 0.21 -1.23 16 8 C -0.11 -2.44 5.21 -20.09 -0.10 -2.54 16 9 C 0.18 5.13 5.77 85.63 0.49 5.62 16 10 N -0.73 -23.29 5.45 -482.31 -2.63 -25.92 16 11 C 0.70 31.34 8.27 179.05 1.48 32.82 16 12 O -0.64 -35.36 15.90 -3.96 -0.06 -35.42 16 13 N -0.59 -26.54 2.80 -820.05 -2.30 -28.84 16 14 C 0.28 15.51 4.47 85.63 0.38 15.90 16 15 C -0.53 -31.02 8.93 25.60 0.23 -30.79 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.41 5.46 84.66 0.46 0.87 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 19 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 C 0.06 1.95 6.17 44.99 0.28 2.22 16 24 C -0.18 -5.77 9.73 30.62 0.30 -5.48 16 25 C -0.18 -5.16 10.03 30.62 0.31 -4.85 16 26 C -0.09 -1.72 9.58 22.04 0.21 -1.51 16 27 C -0.12 -2.01 9.77 22.34 0.22 -1.79 16 28 C -0.02 -0.38 5.74 -21.30 -0.12 -0.50 16 29 C -0.17 -3.06 9.68 22.42 0.22 -2.84 16 30 H 0.07 0.34 7.63 -2.39 -0.02 0.32 16 31 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.34 7.63 -2.39 -0.02 0.32 16 33 H 0.15 1.30 6.21 -2.91 -0.02 1.28 16 34 H 0.15 1.68 8.06 -2.92 -0.02 1.65 16 35 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.07 1.93 8.08 -2.38 -0.02 1.91 16 37 H 0.06 1.81 8.07 -2.39 -0.02 1.80 16 38 H 0.41 10.50 6.13 -92.71 -0.57 9.93 16 39 H 0.03 1.45 6.25 -2.39 -0.01 1.44 16 40 H -0.01 -0.34 7.36 -2.39 -0.02 -0.36 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.15 3.63 6.30 -2.39 -0.02 3.62 16 43 H 0.08 3.21 6.29 -2.38 -0.01 3.20 16 44 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.13 2.71 8.14 -2.38 -0.02 2.69 16 46 H 0.07 2.44 7.84 -2.39 -0.02 2.42 16 47 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 48 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 49 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -79.61 406.46 2.87 -76.74 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.41 Total: 24.58 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.11 Total: 4.01 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.65 Total: -111.32 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.03 Total: -41.56 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -79.61 2.87 -76.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072273219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.248 kcal (2) G-P(sol) polarization free energy of solvation -79.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds