Wall clock time and date at job start Tue Mar 31 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20764 * 119.99933 * 2 1 4 4 C 1.50698 * 120.00219 * 180.02562 * 2 1 3 5 5 S 1.81393 * 109.47311 * 179.97438 * 4 2 1 6 6 C 1.81402 * 103.00272 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47502 * 180.02562 * 6 5 4 8 8 O 1.21296 * 119.99776 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00203 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00038 * 4.73904 * 9 7 6 11 11 C 1.50700 * 109.47096 * 269.99719 * 10 9 7 12 12 H 1.07998 * 119.99689 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00148 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99763 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00325 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46812 * 60.00178 * 15 13 11 17 17 H 1.48496 * 109.47419 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46883 * 300.00602 * 15 13 11 19 19 C 1.39976 * 120.00158 * 184.73644 * 9 7 6 20 20 C 1.38884 * 120.05682 * 67.91189 * 19 9 7 21 21 C 1.38086 * 119.93991 * 179.97438 * 20 19 9 22 22 C 1.38402 * 120.06132 * 0.02562 * 21 20 19 23 23 Cl 1.73603 * 119.94419 * 180.27812 * 22 21 20 24 24 C 1.38366 * 120.11097 * 0.02562 * 22 21 20 25 25 C 1.50708 * 119.96696 * 180.02562 * 24 22 21 26 26 C 1.38123 * 120.05816 * 359.97438 * 24 22 21 27 27 H 1.09000 * 109.47256 * 269.99489 * 1 2 3 28 28 H 1.08997 * 109.47335 * 30.00292 * 1 2 3 29 29 H 1.09005 * 109.46881 * 149.99905 * 1 2 3 30 30 H 1.09005 * 109.47098 * 59.99956 * 4 2 1 31 31 H 1.09006 * 109.47254 * 299.99973 * 4 2 1 32 32 H 1.08999 * 109.47275 * 59.99666 * 6 5 4 33 33 H 1.09006 * 109.47000 * 300.00461 * 6 5 4 34 34 H 1.09008 * 109.46948 * 29.99800 * 10 9 7 35 35 H 1.08998 * 109.47370 * 149.99301 * 10 9 7 36 36 H 0.97009 * 119.99858 * 179.97438 * 14 13 11 37 37 H 1.07994 * 120.03116 * 359.97438 * 20 19 9 38 38 H 1.08003 * 119.97220 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.47053 * 90.00169 * 25 24 22 40 40 H 1.09005 * 109.46445 * 209.99738 * 25 24 22 41 41 H 1.08997 * 109.47071 * 330.00008 * 25 24 22 42 42 H 1.08008 * 120.02867 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 -0.0006 5 16 4.0439 -0.9736 -0.0012 6 6 4.7682 -2.6368 -0.0011 7 6 6.2713 -2.5301 -0.0009 8 8 6.8020 -1.4394 -0.0004 9 7 7.0262 -3.6467 -0.0003 10 6 6.3889 -4.9617 -0.1045 11 6 6.0730 -5.4777 1.2757 12 1 6.3217 -4.8851 2.1437 13 6 5.4656 -6.7058 1.4303 14 7 5.1624 -7.4271 0.3733 15 14 5.0747 -7.3457 3.1411 16 1 4.1542 -6.4017 3.8243 17 1 4.4287 -8.6786 3.0355 18 1 6.3311 -7.4657 3.9238 19 6 8.4190 -3.5499 0.1000 20 6 9.0021 -3.1024 1.2783 21 6 10.3764 -3.0083 1.3747 22 6 11.1726 -3.3591 0.2983 23 17 12.9003 -3.2466 0.4253 24 6 10.5940 -3.8043 -0.8771 25 6 11.4640 -4.1860 -2.0470 26 6 9.2198 -3.9002 -0.9787 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.9972 -1.8763 -0.8909 31 1 1.9972 -1.8771 0.8892 32 1 4.4418 -3.1753 -0.8908 33 1 4.4423 -3.1749 0.8892 34 1 5.4670 -4.8741 -0.6796 35 1 7.0651 -5.6545 -0.6055 36 1 4.7354 -8.2913 0.4821 37 1 8.3814 -2.8281 2.1184 38 1 10.8305 -2.6607 2.2909 39 1 11.7148 -5.2448 -1.9830 40 1 10.9273 -3.9952 -2.9763 41 1 12.3790 -3.5941 -2.0276 42 1 8.7687 -4.2474 -1.8966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072307050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:54 Heat of formation + Delta-G solvation = -52.687694 kcal Electronic energy + Delta-G solvation = -26072.989344 eV Core-core repulsion = 22170.448846 eV Total energy + Delta-G solvation = -3902.540497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 355.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11437 -39.38021 -38.42551 -36.33743 -35.17402 -32.95542 -32.39249 -31.66700 -30.60430 -28.79093 -28.29097 -27.35439 -26.64779 -23.30385 -22.46837 -21.66452 -20.14410 -18.81009 -17.02726 -16.84238 -16.52018 -16.41728 -15.97051 -15.74814 -15.67140 -15.59933 -14.69591 -14.54522 -14.47312 -14.02459 -13.94120 -13.27209 -13.09693 -12.98429 -12.83666 -12.67076 -12.46150 -12.29005 -12.23777 -12.20351 -12.00519 -11.83772 -11.65910 -11.41605 -11.21589 -11.06654 -10.90490 -10.59310 -10.38202 -10.01876 -9.94624 -9.69449 -9.47277 -8.74705 -8.67831 -8.53585 -7.82544 -7.42722 -6.35361 -4.43841 1.34501 1.54178 1.57062 1.79300 2.30391 2.65676 3.03026 3.13316 3.19424 3.22735 3.60438 3.85865 3.86793 4.19646 4.79737 4.90089 4.92714 4.97570 4.97907 5.05696 5.18864 5.19438 5.25045 5.38675 5.42153 5.53870 5.65728 5.68864 5.70165 5.77505 5.81000 5.96410 6.16150 6.30062 6.48251 6.59268 6.70219 6.89184 6.98148 7.31089 7.39091 7.58638 7.82701 7.93229 8.55869 8.70858 9.24622 10.71427 Molecular weight = 355.08amu Principal moments of inertia in cm(-1) A = 0.007936 B = 0.003300 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.258618 B = 8482.004258 C =11061.607479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.370 3.630 3 O -0.437 6.437 4 C -0.178 4.178 5 S -0.149 6.149 6 C -0.124 4.124 7 C 0.540 3.460 8 O -0.535 6.535 9 N -0.559 5.559 10 C 0.238 3.762 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.889 5.889 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.188 3.812 20 C -0.100 4.100 21 C -0.097 4.097 22 C -0.047 4.047 23 Cl -0.081 7.081 24 C -0.069 4.069 25 C -0.115 4.115 26 C -0.112 4.112 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.268 0.732 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 5.707 -2.673 6.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.243 3.757 3 O -0.309 6.309 4 C -0.327 4.327 5 S 0.077 5.923 6 C -0.275 4.275 7 C 0.328 3.672 8 O -0.412 6.412 9 N -0.288 5.288 10 C 0.120 3.880 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.526 5.526 15 Si 0.724 3.276 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.096 3.904 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.074 4.074 23 Cl -0.053 7.053 24 C -0.070 4.070 25 C -0.171 4.171 26 C -0.132 4.132 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.196 7.619 -2.742 8.100 hybrid contribution -0.958 -2.239 1.066 2.658 sum -0.761 5.381 -1.676 5.687 Atomic orbital electron populations 1.22225 0.93207 1.04998 1.04923 1.23977 0.91830 0.88776 0.71089 1.90471 1.71579 1.34412 1.34409 1.24223 0.98744 1.02149 1.07540 1.87815 0.97853 1.08445 1.98165 1.23580 0.96430 0.98953 1.08496 1.19570 0.87806 0.83713 0.76114 1.90713 1.73936 1.26702 1.49887 1.45867 1.02999 1.09011 1.70877 1.19630 0.93570 0.76631 0.98164 1.21381 1.40852 1.03697 0.92257 0.91904 1.24912 0.95049 0.96228 0.97302 1.69901 1.40975 1.12742 1.29024 0.86557 0.78913 0.78156 0.83952 1.19992 1.21009 1.19925 1.17557 0.83657 0.96553 0.92619 1.21181 0.93894 0.99610 0.97280 1.20810 0.92833 1.00262 0.97730 1.20664 0.83709 1.06829 0.96192 1.98320 1.11863 1.97023 1.98053 1.19498 0.93627 0.99347 0.94574 1.20826 0.98963 1.02101 0.95236 1.21024 0.91930 1.01757 0.98509 0.88413 0.89386 0.89452 0.86713 0.86568 0.87147 0.85683 0.93952 0.93968 0.92247 0.85198 0.85022 0.90736 0.91232 0.91029 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 10.25 36.00 0.37 -0.93 16 2 C 0.37 4.16 7.28 -29.04 -0.21 3.95 16 3 O -0.44 -6.85 16.61 6.00 0.10 -6.75 16 4 C -0.18 -2.01 6.35 36.00 0.23 -1.78 16 5 S -0.15 -2.49 20.01 -107.50 -2.15 -4.64 16 6 C -0.12 -2.13 5.09 36.00 0.18 -1.95 16 7 C 0.54 10.90 7.55 -10.99 -0.08 10.81 16 8 O -0.53 -12.04 15.62 5.54 0.09 -11.96 16 9 N -0.56 -11.32 2.51 -114.72 -0.29 -11.61 16 10 C 0.24 5.24 4.88 -5.19 -0.03 5.21 16 11 C -0.54 -13.11 9.16 -34.44 -0.32 -13.43 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -22.90 13.29 55.43 0.74 -22.17 16 15 Si 0.90 19.42 29.54 -169.99 -5.02 14.40 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C 0.19 3.63 4.75 -83.68 -0.40 3.23 16 20 C -0.10 -1.82 9.55 -39.40 -0.38 -2.20 16 21 C -0.10 -1.54 9.82 -39.58 -0.39 -1.93 16 22 C -0.05 -0.73 6.32 -39.47 -0.25 -0.97 16 23 Cl -0.08 -1.07 27.29 -51.86 -1.41 -2.48 16 24 C -0.07 -1.06 5.88 -104.61 -0.62 -1.67 16 25 C -0.11 -1.38 9.61 36.01 0.35 -1.04 16 26 C -0.11 -1.93 9.34 -39.40 -0.37 -2.30 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.12 1.12 8.14 -51.92 -0.42 0.69 16 32 H 0.11 1.73 7.26 -51.92 -0.38 1.35 16 33 H 0.13 2.16 7.91 -51.92 -0.41 1.75 16 34 H 0.04 0.93 6.47 -51.92 -0.34 0.59 16 35 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 36 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 37 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.07 0.80 6.90 -51.93 -0.36 0.45 16 42 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -30.33 391.08 -9.72 -40.05 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.66 Total: 2.65 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.00 Total: -3.39 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.45 Total: -33.77 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.19 Total: -18.71 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.15 Total: -4.64 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.41 Total: -2.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.33 -9.72 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072307050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.642 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds