Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48504 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46966 * 299.99861 * 3 2 1 6 6 H 1.48493 * 109.47300 * 59.99809 * 3 2 1 7 7 C 1.38820 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99740 * 160.08148 * 7 2 1 9 9 N 1.36933 * 119.99980 * 340.07982 * 7 2 1 10 10 C 1.46493 * 120.00177 * 139.47415 * 9 7 2 11 11 C 1.52998 * 109.47472 * 89.99801 * 10 9 7 12 12 N 1.46503 * 109.47610 * 180.02562 * 11 10 9 13 13 C 1.35873 * 119.96366 * 269.72919 * 12 11 10 14 14 N 1.29589 * 122.23121 * 179.71363 * 13 12 11 15 15 C 1.37013 * 121.68772 * 0.58826 * 14 13 12 16 16 C 1.39902 * 129.15633 * 179.68816 * 15 14 13 17 17 C 1.32764 * 115.82516 * 179.97438 * 16 15 14 18 18 S 1.75581 * 110.53507 * 0.02562 * 17 16 15 19 19 C 1.39105 * 118.18867 * 359.68876 * 15 14 13 20 20 C 1.34886 * 119.96430 * 89.99731 * 12 11 10 21 21 O 1.21965 * 120.63800 * 359.96142 * 20 12 11 22 22 C 1.46501 * 119.99838 * 319.47445 * 9 7 2 23 23 C 1.50694 * 109.47100 * 268.71613 * 22 9 7 24 24 C 1.38238 * 120.00475 * 263.32340 * 23 22 9 25 25 C 1.38231 * 119.99923 * 179.76793 * 24 23 22 26 26 C 1.38229 * 120.00464 * 0.50439 * 25 24 23 27 27 C 1.38245 * 119.99593 * 359.75049 * 26 25 24 28 28 C 1.38223 * 120.00026 * 359.97438 * 27 26 25 29 29 H 0.97004 * 120.00279 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.47013 * 329.99764 * 10 9 7 31 31 H 1.08999 * 109.47303 * 210.00164 * 10 9 7 32 32 H 1.09006 * 109.46698 * 60.00378 * 11 10 9 33 33 H 1.08999 * 109.47152 * 300.00455 * 11 10 9 34 34 H 1.07996 * 118.88339 * 359.97438 * 13 12 11 35 35 H 1.08003 * 122.08854 * 359.97438 * 16 15 14 36 36 H 1.07997 * 124.73098 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47427 * 28.72197 * 22 9 7 38 38 H 1.09005 * 109.46903 * 148.71663 * 22 9 7 39 39 H 1.07996 * 119.99574 * 359.97438 * 24 23 22 40 40 H 1.08003 * 119.99642 * 180.23363 * 25 24 23 41 41 H 1.08001 * 120.00532 * 179.72933 * 26 25 24 42 42 H 1.08004 * 119.99454 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00238 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0417 -1.2303 -0.3181 9 7 1.3870 -2.3524 0.4051 10 6 1.6205 -3.6052 -0.3175 11 6 2.8128 -4.3368 0.3021 12 7 3.0467 -5.5893 -0.4209 13 6 2.4324 -6.7316 -0.0159 14 7 2.6034 -7.8620 -0.6261 15 6 3.4279 -7.9748 -1.7146 16 6 3.7293 -9.1058 -2.4810 17 6 4.5711 -8.9135 -3.4894 18 16 5.0733 -7.2325 -3.5605 19 6 4.0834 -6.8330 -2.1635 20 6 3.8760 -5.6085 -1.4846 21 8 4.4360 -4.5901 -1.8544 22 6 0.4866 -2.3302 1.5606 23 6 1.2665 -2.6447 2.8111 24 6 1.2846 -3.9344 3.3085 25 6 2.0038 -4.2237 4.4530 26 6 2.6966 -3.2215 5.1059 27 6 2.6742 -1.9307 4.6114 28 6 1.9596 -1.6424 3.4639 29 1 -0.4851 0.8401 0.0004 30 1 1.8323 -3.3868 -1.3643 31 1 0.7330 -4.2344 -0.2501 32 1 2.6009 -4.5552 1.3488 33 1 3.7002 -3.7076 0.2347 34 1 1.7761 -6.6953 0.8409 35 1 3.3037 -10.0748 -2.2658 36 1 4.9011 -9.6835 -4.1709 37 1 0.0369 -1.3415 1.6518 38 1 -0.2976 -3.0749 1.4245 39 1 0.7394 -4.7164 2.8011 40 1 2.0210 -5.2321 4.8394 41 1 3.2550 -3.4467 6.0025 42 1 3.2151 -1.1475 5.1219 43 1 1.9418 -0.6340 3.0778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072579295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = 78.706352 kcal Electronic energy + Delta-G solvation = -28701.766681 eV Core-core repulsion = 24839.649458 eV Total energy + Delta-G solvation = -3862.117223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.110 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51972 -38.75818 -38.02453 -36.76127 -35.76630 -33.68139 -31.76565 -30.96948 -30.36713 -30.03666 -28.22990 -25.66841 -25.50331 -24.18824 -23.28961 -21.98693 -21.50124 -20.97285 -20.24067 -19.01148 -17.55668 -16.99372 -16.79573 -16.37090 -15.92459 -15.77698 -14.94148 -14.85584 -14.62432 -14.36948 -14.14411 -13.95501 -13.67933 -13.49841 -13.22989 -13.01663 -12.90029 -12.80645 -12.58372 -12.56610 -12.06545 -11.73057 -11.32447 -11.21565 -10.96319 -10.86200 -10.74738 -10.54724 -10.23798 -10.15819 -10.08117 -10.03645 -9.88015 -9.71572 -9.11214 -8.63774 -8.40588 -8.11328 -7.94351 -6.75511 -5.96689 -3.57178 0.20064 1.24674 1.38890 1.79207 1.88747 1.94354 2.35507 2.73663 3.27510 3.37814 3.42272 3.60841 3.84254 4.27569 4.41473 4.46162 4.68922 4.91073 5.00036 5.17976 5.32764 5.36533 5.38780 5.48768 5.51380 5.61132 5.69167 5.75780 5.83912 5.85137 5.97660 6.05097 6.12059 6.33348 6.36924 6.41997 6.58210 6.65964 6.69568 6.80628 6.94442 7.04118 7.28256 7.45799 7.59780 7.73304 7.75792 7.92202 8.37739 9.01202 9.59206 10.17531 11.05019 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.003383 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.284057 B = 8275.443570 C = 9973.980237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.022 3.978 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.265 4.265 8 H 0.063 0.937 9 N -0.564 5.564 10 C 0.140 3.860 11 C 0.067 3.933 12 N -0.521 5.521 13 C 0.383 3.617 14 N -0.522 5.522 15 C 0.164 3.836 16 C -0.125 4.125 17 C -0.185 4.185 18 S 0.204 5.796 19 C -0.329 4.329 20 C 0.561 3.439 21 O -0.517 6.517 22 C 0.175 3.825 23 C -0.073 4.073 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.125 4.125 28 C -0.096 4.096 29 H 0.257 0.743 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.204 0.796 35 H 0.152 0.848 36 H 0.178 0.822 37 H 0.102 0.898 38 H 0.037 0.963 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -16.327 1.778 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.179 4.179 3 Si 0.722 3.278 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.283 5.283 10 C 0.012 3.988 11 C -0.057 4.057 12 N -0.241 5.241 13 C 0.093 3.907 14 N -0.245 5.245 15 C 0.039 3.961 16 C -0.156 4.156 17 C -0.323 4.323 18 S 0.469 5.531 19 C -0.451 4.451 20 C 0.355 3.645 21 O -0.393 6.393 22 C 0.050 3.950 23 C -0.076 4.076 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.143 4.143 28 C -0.115 4.115 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.221 0.779 35 H 0.170 0.830 36 H 0.195 0.805 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.450 -15.418 0.605 16.364 hybrid contribution -0.062 0.670 0.841 1.077 sum 5.388 -14.748 1.446 15.768 Atomic orbital electron populations 1.70010 1.05618 1.26082 1.50480 1.25238 0.94989 0.98860 0.98845 0.86373 0.80145 0.83704 0.77551 1.19751 1.21371 1.21142 1.19064 0.93842 0.84957 1.41623 0.91914 1.43589 1.53304 1.03627 1.27752 1.21125 0.92826 0.88619 0.96249 1.23307 1.04316 0.82038 0.96009 1.46798 1.38137 1.12007 1.27205 1.24811 0.90357 0.79949 0.95596 1.68571 1.21809 1.23273 1.10813 1.19080 0.92758 0.91718 0.92563 1.19476 1.01181 0.99050 0.95907 1.25760 1.02718 1.01031 1.02743 1.84142 1.43552 1.00562 1.24875 1.24667 1.13392 0.98783 1.08302 1.15874 0.80040 0.88092 0.80459 1.90991 1.48427 1.34755 1.65086 1.20064 0.90004 1.03116 0.81858 1.21258 0.97245 0.92476 0.96659 1.21010 1.00648 0.96546 0.96847 1.20984 0.98699 0.98462 0.96535 1.20920 1.01336 0.93546 1.00308 1.21128 0.99780 0.96367 0.97056 1.21139 0.96225 1.00043 0.94097 0.93298 0.92325 0.94203 0.88976 0.88385 0.77935 0.83037 0.80511 0.88071 0.94459 0.87090 0.87194 0.87322 0.87112 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.77 11.61 55.49 0.64 -23.13 16 2 C 0.02 0.58 4.95 -17.43 -0.09 0.49 16 3 Si 0.89 20.77 29.60 -169.99 -5.03 15.74 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.27 -6.83 9.43 -15.06 -0.14 -6.97 16 8 H 0.06 1.70 7.91 -52.49 -0.41 1.28 16 9 N -0.56 -12.71 2.39 -174.61 -0.42 -13.13 16 10 C 0.14 2.75 6.04 -4.05 -0.02 2.73 16 11 C 0.07 1.14 5.69 -4.04 -0.02 1.12 16 12 N -0.52 -8.13 2.60 -120.92 -0.31 -8.45 16 13 C 0.38 4.80 11.47 -90.36 -1.04 3.77 16 14 N -0.52 -7.01 10.49 -12.23 -0.13 -7.14 16 15 C 0.16 2.26 7.01 -84.61 -0.59 1.66 16 16 C -0.12 -1.32 10.15 -40.83 -0.41 -1.74 16 17 C -0.18 -1.67 11.13 28.86 0.32 -1.35 16 18 S 0.20 2.48 23.30 -107.50 -2.50 -0.02 16 19 C -0.33 -5.10 6.49 -38.00 -0.25 -5.35 16 20 C 0.56 10.14 7.46 -14.95 -0.11 10.03 16 21 O -0.52 -11.19 16.76 4.95 0.08 -11.10 16 22 C 0.18 3.65 5.45 -5.20 -0.03 3.62 16 23 C -0.07 -1.33 5.22 -104.62 -0.55 -1.88 16 24 C -0.13 -1.98 7.82 -39.58 -0.31 -2.29 16 25 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 26 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 27 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 28 C -0.10 -1.78 9.73 -39.59 -0.39 -2.16 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.06 1.32 8.04 -51.92 -0.42 0.90 16 31 H 0.04 0.71 7.90 -51.93 -0.41 0.30 16 32 H 0.09 1.40 5.74 -51.93 -0.30 1.10 16 33 H 0.10 1.97 7.44 -51.93 -0.39 1.58 16 34 H 0.20 1.72 8.02 -52.49 -0.42 1.30 16 35 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.10 2.44 5.68 -51.93 -0.30 2.14 16 38 H 0.04 0.72 7.81 -51.93 -0.41 0.32 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -30.99 379.49 -11.91 -42.90 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.14 Total: 3.90 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -4.82 Total: -5.29 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.21 Total: -51.84 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.50 Total: -0.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.99 -11.91 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072579295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.605 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds