Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48504 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46966 * 299.99861 * 3 2 1 6 6 H 1.48493 * 109.47300 * 59.99809 * 3 2 1 7 7 C 1.38820 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99740 * 160.08148 * 7 2 1 9 9 N 1.36933 * 119.99980 * 340.07982 * 7 2 1 10 10 C 1.46493 * 120.00177 * 139.47415 * 9 7 2 11 11 C 1.52998 * 109.47472 * 89.99801 * 10 9 7 12 12 N 1.46503 * 109.47610 * 180.02562 * 11 10 9 13 13 C 1.35873 * 119.96366 * 269.72919 * 12 11 10 14 14 N 1.29589 * 122.23121 * 179.71363 * 13 12 11 15 15 C 1.37013 * 121.68772 * 0.58826 * 14 13 12 16 16 C 1.39902 * 129.15633 * 179.68816 * 15 14 13 17 17 C 1.32764 * 115.82516 * 179.97438 * 16 15 14 18 18 S 1.75581 * 110.53507 * 0.02562 * 17 16 15 19 19 C 1.39105 * 118.18867 * 359.68876 * 15 14 13 20 20 C 1.34886 * 119.96430 * 89.99731 * 12 11 10 21 21 O 1.21965 * 120.63800 * 359.96142 * 20 12 11 22 22 C 1.46501 * 119.99838 * 319.47445 * 9 7 2 23 23 C 1.50694 * 109.47100 * 268.71613 * 22 9 7 24 24 C 1.38238 * 120.00475 * 263.32340 * 23 22 9 25 25 C 1.38231 * 119.99923 * 179.76793 * 24 23 22 26 26 C 1.38229 * 120.00464 * 0.50439 * 25 24 23 27 27 C 1.38245 * 119.99593 * 359.75049 * 26 25 24 28 28 C 1.38223 * 120.00026 * 359.97438 * 27 26 25 29 29 H 0.97004 * 120.00279 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.47013 * 329.99764 * 10 9 7 31 31 H 1.08999 * 109.47303 * 210.00164 * 10 9 7 32 32 H 1.09006 * 109.46698 * 60.00378 * 11 10 9 33 33 H 1.08999 * 109.47152 * 300.00455 * 11 10 9 34 34 H 1.07996 * 118.88339 * 359.97438 * 13 12 11 35 35 H 1.08003 * 122.08854 * 359.97438 * 16 15 14 36 36 H 1.07997 * 124.73098 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47427 * 28.72197 * 22 9 7 38 38 H 1.09005 * 109.46903 * 148.71663 * 22 9 7 39 39 H 1.07996 * 119.99574 * 359.97438 * 24 23 22 40 40 H 1.08003 * 119.99642 * 180.23363 * 25 24 23 41 41 H 1.08001 * 120.00532 * 179.72933 * 26 25 24 42 42 H 1.08004 * 119.99454 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00238 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0417 -1.2303 -0.3181 9 7 1.3870 -2.3524 0.4051 10 6 1.6205 -3.6052 -0.3175 11 6 2.8128 -4.3368 0.3021 12 7 3.0467 -5.5893 -0.4209 13 6 2.4324 -6.7316 -0.0159 14 7 2.6034 -7.8620 -0.6261 15 6 3.4279 -7.9748 -1.7146 16 6 3.7293 -9.1058 -2.4810 17 6 4.5711 -8.9135 -3.4894 18 16 5.0733 -7.2325 -3.5605 19 6 4.0834 -6.8330 -2.1635 20 6 3.8760 -5.6085 -1.4846 21 8 4.4360 -4.5901 -1.8544 22 6 0.4866 -2.3302 1.5606 23 6 1.2665 -2.6447 2.8111 24 6 1.2846 -3.9344 3.3085 25 6 2.0038 -4.2237 4.4530 26 6 2.6966 -3.2215 5.1059 27 6 2.6742 -1.9307 4.6114 28 6 1.9596 -1.6424 3.4639 29 1 -0.4851 0.8401 0.0004 30 1 1.8323 -3.3868 -1.3643 31 1 0.7330 -4.2344 -0.2501 32 1 2.6009 -4.5552 1.3488 33 1 3.7002 -3.7076 0.2347 34 1 1.7761 -6.6953 0.8409 35 1 3.3037 -10.0748 -2.2658 36 1 4.9011 -9.6835 -4.1709 37 1 0.0369 -1.3415 1.6518 38 1 -0.2976 -3.0749 1.4245 39 1 0.7394 -4.7164 2.8011 40 1 2.0210 -5.2321 4.8394 41 1 3.2550 -3.4467 6.0025 42 1 3.2151 -1.1475 5.1219 43 1 1.9418 -0.6340 3.0778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072579295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = 63.031471 kcal Electronic energy + Delta-G solvation = -28702.446395 eV Core-core repulsion = 24839.649458 eV Total energy + Delta-G solvation = -3862.796937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.110 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.70880 -40.04781 -39.19669 -38.08484 -37.24177 -34.91548 -33.56422 -32.33825 -31.59107 -31.17760 -29.67173 -27.38643 -26.65522 -25.48438 -24.59934 -23.21249 -22.90082 -22.05193 -21.73872 -20.10025 -18.81018 -18.72630 -17.87797 -17.60409 -17.23611 -17.00072 -16.68149 -15.98777 -15.85550 -15.83990 -15.65475 -15.21512 -15.05531 -14.53594 -14.49487 -14.36376 -14.21752 -14.03515 -13.84260 -13.79803 -13.40392 -13.12503 -13.01332 -12.83482 -12.58624 -12.31979 -12.10460 -12.06934 -11.86196 -11.69337 -11.56682 -11.48808 -11.06713 -10.96246 -10.57188 -10.10156 -9.61338 -9.40513 -9.01528 -8.62361 -7.93646 -5.58254 -0.81268 0.29351 0.40622 0.66960 0.70814 0.91191 1.27370 1.36105 1.40846 1.48724 1.52961 2.42951 2.49171 2.92366 3.03954 3.18815 3.38160 3.64456 3.81715 3.88799 4.04779 4.17559 4.18875 4.26532 4.30882 4.37884 4.45800 4.51158 4.70533 4.72397 4.79221 4.85835 4.92071 4.98114 5.01027 5.11064 5.34466 5.36593 5.38542 5.47262 5.57901 5.65307 5.76673 5.80869 6.06602 6.33057 6.44354 6.59722 6.70709 7.09769 7.71725 8.24621 9.02872 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.003383 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.284057 B = 8275.443570 C = 9973.980237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.015 4.015 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.267 4.267 8 H 0.037 0.963 9 N -0.578 5.578 10 C 0.146 3.854 11 C 0.094 3.906 12 N -0.523 5.523 13 C 0.384 3.616 14 N -0.521 5.521 15 C 0.167 3.833 16 C -0.139 4.139 17 C -0.141 4.141 18 S 0.181 5.819 19 C -0.374 4.374 20 C 0.548 3.452 21 O -0.575 6.575 22 C 0.183 3.817 23 C -0.092 4.092 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.137 4.137 27 C -0.133 4.133 28 C -0.126 4.126 29 H 0.255 0.745 30 H 0.017 0.983 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.058 0.942 34 H 0.251 0.749 35 H 0.183 0.817 36 H 0.225 0.775 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -20.935 3.515 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.214 4.214 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.398 4.398 8 H 0.055 0.945 9 N -0.298 5.298 10 C 0.019 3.981 11 C -0.030 4.030 12 N -0.242 5.242 13 C 0.096 3.904 14 N -0.242 5.242 15 C 0.041 3.959 16 C -0.169 4.169 17 C -0.278 4.278 18 S 0.445 5.555 19 C -0.495 4.495 20 C 0.345 3.655 21 O -0.456 6.456 22 C 0.058 3.942 23 C -0.094 4.094 24 C -0.146 4.146 25 C -0.136 4.136 26 C -0.155 4.155 27 C -0.151 4.151 28 C -0.145 4.145 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.267 0.733 35 H 0.200 0.800 36 H 0.242 0.758 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.159 0.841 42 H 0.142 0.858 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.429 -20.087 2.371 20.942 hybrid contribution -0.038 1.902 0.311 1.928 sum 5.391 -18.184 2.682 19.155 Atomic orbital electron populations 1.70088 1.06389 1.26279 1.52065 1.25692 0.95562 1.00881 0.99263 0.85628 0.78866 0.81092 0.77421 1.20206 1.21563 1.20484 1.18960 0.92899 0.86680 1.41216 0.94512 1.43677 1.53359 1.03623 1.29115 1.21059 0.94884 0.88254 0.93931 1.22765 1.01087 0.82166 0.97022 1.46737 1.38273 1.12459 1.26743 1.25772 0.89850 0.78492 0.96281 1.68654 1.21549 1.23261 1.10723 1.19642 0.91733 0.92157 0.92417 1.19795 1.01965 0.99239 0.95906 1.26305 1.00049 0.99499 1.01958 1.84219 1.43641 1.03559 1.24062 1.24686 1.16168 0.98284 1.10373 1.16394 0.79839 0.88441 0.80875 1.90944 1.51000 1.36741 1.66924 1.19859 0.90207 1.01460 0.82659 1.20951 0.98039 0.94226 0.96210 1.21269 1.00548 0.95432 0.97320 1.21443 0.96729 1.00213 0.95232 1.21356 1.00623 0.92546 1.00969 1.21308 0.99486 0.98127 0.96199 1.21036 0.98542 0.98875 0.96041 0.93559 0.96481 0.91521 0.86156 0.92350 0.73308 0.79959 0.75838 0.91917 0.93053 0.84110 0.83047 0.84061 0.85831 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.38 11.61 21.65 0.25 -51.13 16 2 C -0.01 -0.82 4.95 84.87 0.42 -0.40 16 3 Si 0.94 45.13 29.60 68.60 2.03 47.16 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.27 -14.68 9.43 84.04 0.79 -13.89 16 8 H 0.04 2.18 7.91 -2.91 -0.02 2.16 16 9 N -0.58 -27.27 2.39 -706.35 -1.69 -28.95 16 10 C 0.15 5.94 6.04 86.38 0.52 6.46 16 11 C 0.09 3.24 5.69 86.38 0.49 3.73 16 12 N -0.52 -16.24 2.60 -654.53 -1.70 -17.94 16 13 C 0.38 8.61 11.47 180.26 2.07 10.67 16 14 N -0.52 -12.46 10.49 -192.59 -2.02 -14.48 16 15 C 0.17 4.25 7.01 38.95 0.27 4.52 16 16 C -0.14 -2.42 10.15 21.50 0.22 -2.20 16 17 C -0.14 -2.00 11.13 66.64 0.74 -1.26 16 18 S 0.18 4.29 23.30 -56.49 -1.32 2.98 16 19 C -0.37 -11.60 6.49 23.29 0.15 -11.45 16 20 C 0.55 20.66 7.46 85.04 0.63 21.29 16 21 O -0.58 -27.03 16.76 -5.20 -0.09 -27.12 16 22 C 0.18 7.83 5.45 85.63 0.47 8.30 16 23 C -0.09 -3.31 5.22 -19.87 -0.10 -3.41 16 24 C -0.13 -3.39 7.82 22.27 0.17 -3.22 16 25 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 26 C -0.14 -3.37 10.05 22.27 0.22 -3.14 16 27 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 28 C -0.13 -4.79 9.73 22.27 0.22 -4.57 16 29 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.02 0.81 8.04 -2.38 -0.02 0.79 16 31 H 0.07 2.32 7.90 -2.39 -0.02 2.30 16 32 H 0.12 3.42 5.74 -2.38 -0.01 3.41 16 33 H 0.06 2.51 7.44 -2.39 -0.02 2.49 16 34 H 0.25 2.94 8.02 -2.91 -0.02 2.92 16 35 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.06 3.19 5.68 -2.39 -0.01 3.18 16 38 H 0.05 1.98 7.81 -2.38 -0.02 1.96 16 39 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.12 3.33 8.06 -2.91 -0.02 3.30 16 43 H 0.09 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -76.42 379.49 4.25 -72.17 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.04 Total: 12.18 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 7.74 Total: 5.14 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -5.15 Total: -112.50 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.09 Total: -27.12 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.32 Total: 2.98 kcal Total: -76.42 4.25 -72.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072579295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.199 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds