Wall clock time and date at job start Tue Mar 31 2020 05:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99689 * 2 1 4 4 H 1.48504 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47489 * 300.00678 * 3 2 1 6 6 H 1.48500 * 109.47045 * 60.00561 * 3 2 1 7 7 C 1.37868 * 120.00529 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00572 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99787 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99950 * 98.54292 * 10 9 7 12 12 O 1.21601 * 120.00158 * 186.41188 * 11 10 9 13 13 C 1.47585 * 120.00446 * 6.41066 * 11 10 9 14 14 C 1.39849 * 119.99983 * 329.62443 * 13 11 10 15 15 C 1.37662 * 120.04929 * 179.72636 * 14 13 11 16 16 C 1.38939 * 120.02293 * 0.22516 * 15 14 13 17 17 N 1.38990 * 133.12918 * 180.02562 * 16 15 14 18 18 H 0.97000 * 126.18697 * 359.97438 * 17 16 15 19 19 C 1.34736 * 107.62740 * 180.02562 * 17 16 15 20 20 S 1.71202 * 125.26760 * 180.02562 * 19 17 16 21 21 O 1.34329 * 109.46932 * 0.02562 * 19 17 16 22 22 C 1.35613 * 109.05221 * 359.97438 * 21 19 17 23 23 C 1.38183 * 132.87678 * 180.02562 * 22 21 19 24 24 C 1.39849 * 119.99615 * 278.54424 * 10 9 7 25 25 C 1.38884 * 120.07459 * 352.99756 * 24 10 9 26 26 C 1.38117 * 119.92580 * 179.75091 * 25 24 10 27 27 C 1.38277 * 120.07241 * 0.52608 * 26 25 24 28 28 C 1.38293 * 120.14625 * 359.74716 * 27 26 25 29 29 C 1.38103 * 120.06803 * 359.97438 * 28 27 26 30 30 H 0.97007 * 120.00293 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47047 * 60.00420 * 9 7 2 32 32 H 1.08999 * 109.47160 * 299.99822 * 9 7 2 33 33 H 1.07997 * 119.97340 * 359.97438 * 14 13 11 34 34 H 1.08003 * 119.98665 * 180.25449 * 15 14 13 35 35 H 1.07996 * 120.10507 * 359.95592 * 23 22 21 36 36 H 1.07999 * 120.03741 * 359.97438 * 25 24 10 37 37 H 1.07997 * 119.96103 * 180.27366 * 26 25 24 38 38 H 1.07995 * 119.93144 * 179.72568 * 27 26 25 39 39 H 1.07998 * 119.96205 * 180.02562 * 28 27 26 40 40 H 1.08001 * 120.03548 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2123 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.5093 -4.2374 1.1537 12 8 3.3838 -5.0821 1.1744 13 6 1.7832 -3.8966 2.3925 14 6 1.2833 -2.6036 2.5768 15 6 0.6010 -2.2861 3.7295 16 6 0.4122 -3.2490 4.7132 17 7 -0.2183 -3.2312 5.9517 18 1 -0.6648 -2.4709 6.3562 19 6 -0.0962 -4.4605 6.4894 20 16 -0.7128 -4.9386 8.0133 21 8 0.5842 -5.2531 5.6448 22 6 0.9142 -4.5413 4.5387 23 6 1.6002 -4.8635 3.3832 24 6 2.7943 -4.0271 -1.1983 25 6 2.3743 -3.4847 -2.4059 26 6 2.9638 -3.8925 -3.5865 27 6 3.9635 -4.8476 -3.5680 28 6 4.3801 -5.3938 -2.3678 29 6 3.7988 -4.9862 -1.1832 30 1 -0.4851 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 1.4292 -1.8547 1.8125 34 1 0.2118 -1.2883 3.8690 35 1 1.9900 -5.8611 3.2451 36 1 1.5901 -2.7422 -2.4214 37 1 2.6407 -3.4678 -4.5254 38 1 4.4198 -5.1680 -4.4929 39 1 5.1615 -6.1393 -2.3568 40 1 4.1248 -5.4128 -0.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073284738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:22 Heat of formation + Delta-G solvation = 79.440761 kcal Electronic energy + Delta-G solvation = -28239.784111 eV Core-core repulsion = 24307.291551 eV Total energy + Delta-G solvation = -3932.492561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -43.70735 -40.77556 -38.55460 -37.47433 -36.24072 -35.74647 -33.14505 -31.21070 -31.00637 -30.42581 -29.13538 -27.82853 -25.43502 -24.27629 -23.79081 -23.55116 -22.32879 -21.66868 -20.06253 -19.26251 -18.60199 -17.35840 -17.29652 -17.15627 -16.83687 -16.50819 -15.91557 -15.46004 -15.08510 -14.85280 -14.61230 -14.33259 -14.23075 -13.72048 -13.52476 -13.18949 -13.11144 -12.85327 -12.82602 -12.55472 -12.20858 -11.98361 -11.84106 -11.56031 -11.33790 -11.23452 -10.78461 -10.49658 -10.48144 -10.37734 -9.63979 -9.44126 -9.13794 -9.00415 -8.85991 -8.47365 -8.15331 -7.98130 -7.42282 -6.62437 -4.75111 0.10218 0.70407 0.99107 1.21816 1.74626 1.87934 2.06420 2.65996 2.81050 2.96946 3.08860 3.13071 3.30514 3.54952 3.94818 3.98887 4.32508 4.35200 4.56145 4.66642 4.80808 4.89268 5.15767 5.34310 5.36064 5.54471 5.57014 5.62415 5.86258 5.90604 5.95122 5.99593 6.19857 6.29267 6.30392 6.37530 6.53641 6.65656 6.71024 6.80905 6.89847 6.98260 7.06171 7.32960 7.48572 7.62674 7.78607 8.30784 8.44248 8.95098 10.40811 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.003481 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.964478 B = 8041.502467 C =10379.103097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.196 3.804 10 N -0.523 5.523 11 C 0.562 3.438 12 O -0.530 6.530 13 C -0.107 4.107 14 C -0.067 4.067 15 C -0.099 4.099 16 C 0.065 3.935 17 N -0.575 5.575 18 H 0.454 0.546 19 C 0.460 3.540 20 S -0.503 6.503 21 O -0.170 6.170 22 C 0.004 3.996 23 C -0.020 4.020 24 C 0.168 3.832 25 C -0.138 4.138 26 C -0.105 4.105 27 C -0.157 4.157 28 C -0.109 4.109 29 C -0.177 4.177 30 H 0.272 0.728 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.222 0.778 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -2.850 0.297 3.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.588 4.588 8 H 0.090 0.910 9 C 0.078 3.922 10 N -0.240 5.240 11 C 0.353 3.647 12 O -0.410 6.410 13 C -0.111 4.111 14 C -0.085 4.085 15 C -0.121 4.121 16 C -0.037 4.037 17 N -0.203 5.203 18 H 0.300 0.700 19 C 0.166 3.834 20 S -0.369 6.369 21 O -0.067 6.067 22 C -0.046 4.046 23 C -0.041 4.041 24 C 0.072 3.928 25 C -0.159 4.159 26 C -0.124 4.124 27 C -0.176 4.176 28 C -0.127 4.127 29 C -0.197 4.197 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.238 0.762 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.958 -3.679 1.391 4.048 hybrid contribution 0.287 1.782 -0.683 1.930 sum 1.245 -1.897 0.709 2.377 Atomic orbital electron populations 1.69923 1.05995 1.28262 1.47036 1.24982 0.94948 0.99630 0.93729 0.86391 0.80459 0.82389 0.78257 1.19208 1.20368 1.20403 1.21420 0.94355 0.89573 1.53478 0.91016 1.20624 0.88198 0.82338 1.01016 1.45727 1.41569 1.32248 1.04499 1.17995 0.82737 0.80871 0.83122 1.90391 1.31556 1.34467 1.84632 1.19673 1.02112 0.94485 0.94872 1.23595 0.89722 0.98058 0.97081 1.20332 1.01985 0.98495 0.91258 1.19236 0.99577 0.96584 0.88333 1.43719 1.47966 1.12859 1.15787 0.70015 1.26323 0.83707 0.80818 0.92565 1.93624 1.59626 1.84534 0.99083 1.85269 1.59901 1.36691 1.24823 1.19090 1.05998 0.88908 0.90598 1.19945 0.95247 1.01257 0.87636 1.17963 0.94033 0.95371 0.85396 1.21061 1.02258 1.01796 0.90744 1.20866 0.96716 0.97454 0.97372 1.21023 0.99472 0.99388 0.97710 1.21041 0.99588 0.99744 0.92376 1.22763 0.96564 0.98564 1.01773 0.91768 0.93273 0.91158 0.76245 0.83417 0.82859 0.84572 0.86389 0.87030 0.86625 0.80431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -19.55 13.29 55.43 0.74 -18.82 16 2 C 0.07 1.58 5.34 -17.82 -0.10 1.49 16 3 Si 0.90 17.47 29.54 -169.99 -5.02 12.45 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.55 -11.71 7.40 -34.44 -0.25 -11.97 16 8 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.20 3.83 4.07 -5.19 -0.02 3.81 16 10 N -0.52 -9.76 2.70 -115.88 -0.31 -10.08 16 11 C 0.56 10.05 7.39 -12.45 -0.09 9.96 16 12 O -0.53 -9.95 13.10 5.28 0.07 -9.88 16 13 C -0.11 -1.66 5.57 -104.96 -0.59 -2.25 16 14 C -0.07 -1.02 7.45 -39.19 -0.29 -1.31 16 15 C -0.10 -1.26 10.05 -39.53 -0.40 -1.66 16 16 C 0.07 0.80 7.25 -83.80 -0.61 0.20 16 17 N -0.58 -6.24 6.19 -11.51 -0.07 -6.32 16 18 H 0.45 3.51 8.96 -40.82 -0.37 3.15 16 19 C 0.46 6.27 8.45 54.04 0.46 6.73 16 20 S -0.50 -8.03 31.19 -107.50 -3.35 -11.38 16 21 O -0.17 -2.42 10.74 1.86 0.02 -2.40 16 22 C 0.00 0.05 7.34 -39.04 -0.29 -0.23 16 23 C -0.02 -0.28 9.60 -39.08 -0.38 -0.66 16 24 C 0.17 3.11 6.43 -83.72 -0.54 2.57 16 25 C -0.14 -2.42 9.21 -39.39 -0.36 -2.78 16 26 C -0.11 -1.59 10.04 -39.61 -0.40 -1.99 16 27 C -0.16 -2.23 10.04 -39.55 -0.40 -2.63 16 28 C -0.11 -1.64 10.04 -39.61 -0.40 -2.04 16 29 C -0.18 -3.11 9.06 -39.39 -0.36 -3.47 16 30 H 0.27 5.83 8.31 -40.82 -0.34 5.49 16 31 H 0.05 1.02 6.42 -51.93 -0.33 0.69 16 32 H 0.07 1.34 4.05 -51.99 -0.21 1.13 16 33 H 0.22 3.90 3.07 -52.49 -0.16 3.74 16 34 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.15 1.95 7.92 -52.49 -0.42 1.53 16 36 H 0.14 2.47 6.20 -52.49 -0.33 2.15 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.18 3.26 4.52 -56.27 -0.25 3.01 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -25.21 352.29 -10.93 -36.14 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.30 Total: 11.20 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -5.00 Total: -6.22 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.35 Total: -35.21 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.02 Total: 12.45 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -3.35 Total: -11.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -25.21 -10.93 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073284738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.581 kcal (2) G-P(sol) polarization free energy of solvation -25.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds