Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38006 * 126.31675 * 2 1 4 4 C 1.47418 * 126.40702 * 359.95094 * 3 2 1 5 5 O 1.21604 * 120.00501 * 333.23537 * 4 3 2 6 6 N 1.34783 * 119.99643 * 153.22832 * 4 3 2 7 7 C 1.46492 * 120.00219 * 5.50711 * 6 4 3 8 8 C 1.50698 * 109.47298 * 96.42798 * 7 6 4 9 9 H 1.07997 * 120.00029 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00147 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00008 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00118 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47267 * 89.99573 * 12 10 8 14 14 H 1.48499 * 109.47452 * 210.00012 * 12 10 8 15 15 H 1.48509 * 109.47152 * 329.99666 * 12 10 8 16 16 C 1.46501 * 119.99653 * 185.50345 * 6 4 3 17 17 C 1.53004 * 109.46873 * 84.76954 * 16 6 4 18 18 C 1.53774 * 113.61812 * 271.39163 * 17 16 6 19 19 C 1.53954 * 87.02547 * 220.05052 * 18 17 16 20 20 C 1.53783 * 87.10684 * 25.36310 * 19 18 17 21 21 C 1.41371 * 107.18746 * 179.97438 * 3 2 1 22 22 N 1.30450 * 108.07837 * 359.75413 * 21 3 2 23 23 N 1.34627 * 126.31194 * 179.97438 * 2 1 3 24 24 C 1.39812 * 125.77719 * 359.97438 * 23 2 1 25 25 C 1.38946 * 119.68941 * 154.99764 * 24 23 2 26 26 C 1.38423 * 119.10441 * 180.25082 * 25 24 23 27 27 C 1.38792 * 118.48152 * 359.46102 * 26 25 24 28 28 C 1.38133 * 119.29584 * 0.53968 * 27 26 25 29 29 N 1.31887 * 120.84054 * 359.72367 * 28 27 26 30 30 H 1.08996 * 109.47498 * 270.00773 * 1 2 3 31 31 H 1.09003 * 109.47206 * 30.00392 * 1 2 3 32 32 H 1.09001 * 109.47612 * 150.00060 * 1 2 3 33 33 H 1.09006 * 109.47448 * 216.42705 * 7 6 4 34 34 H 1.09003 * 109.47358 * 336.42718 * 7 6 4 35 35 H 0.97003 * 119.99527 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.47075 * 204.76276 * 16 6 4 37 37 H 1.08991 * 109.47438 * 324.77328 * 16 6 4 38 38 H 1.09005 * 112.84796 * 42.59123 * 17 16 6 39 39 H 1.09005 * 113.61412 * 334.56924 * 18 17 16 40 40 H 1.09003 * 113.61685 * 105.46702 * 18 17 16 41 41 H 1.08999 * 113.53212 * 270.81525 * 19 18 17 42 42 H 1.08997 * 113.66744 * 139.92833 * 19 18 17 43 43 H 1.09002 * 113.61356 * 220.09249 * 20 19 18 44 44 H 1.08992 * 113.69216 * 89.20309 * 20 19 18 45 45 H 1.08000 * 125.96314 * 179.97438 * 21 3 2 46 46 H 1.07989 * 120.44387 * 359.97438 * 25 24 23 47 47 H 1.07998 * 120.75505 * 179.72458 * 26 25 24 48 48 H 1.08004 * 120.35470 * 180.24411 * 27 26 25 49 49 H 1.08006 * 119.57999 * 179.70143 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3243 1.1120 0.0000 4 6 1.8865 2.5197 -0.0010 5 8 0.8084 2.8209 -0.4761 6 7 2.6812 3.4729 0.5248 7 6 4.0283 3.1304 0.9874 8 6 5.0269 3.4457 -0.0963 9 1 4.6915 3.8595 -1.0359 10 6 6.3685 3.2051 0.1112 11 7 6.7769 2.7008 1.2551 12 14 7.6063 3.5966 -1.2319 13 1 8.0862 4.9928 -1.0711 14 1 8.7569 2.6632 -1.1322 15 1 6.9599 3.4453 -2.5603 16 6 2.1977 4.8515 0.6338 17 6 1.3930 5.0092 1.9255 18 6 -0.1009 4.6819 1.7647 19 6 -0.3812 5.8858 2.6824 20 6 0.9664 6.4585 2.2126 21 6 3.6599 0.6487 0.0006 22 7 3.6360 -0.6555 0.0063 23 7 2.3042 -1.0848 0.0005 24 6 1.8742 -2.4152 0.0016 25 6 2.7033 -3.4068 -0.5082 26 6 2.2633 -4.7193 -0.5059 27 6 1.0086 -4.9958 0.0189 28 6 0.2377 -3.9597 0.5092 29 7 0.6818 -2.7180 0.4885 30 1 -0.3634 0.0001 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 4.2648 3.7107 1.8793 34 1 4.0721 2.0672 1.2235 35 1 7.7208 2.5311 1.4009 36 1 3.0472 5.5343 0.6493 37 1 1.5617 5.0821 -0.2208 38 1 1.8592 4.5143 2.7776 39 1 -0.4695 4.8133 0.7473 40 1 -0.3874 3.7242 2.1993 41 1 -0.4014 5.6300 3.7418 42 1 -1.2402 6.4811 2.3731 43 1 1.5404 6.9331 3.0084 44 1 0.8916 7.0769 1.3182 45 1 4.5456 1.2668 0.0004 46 1 3.6760 -3.1564 -0.9049 47 1 2.8840 -5.5105 -0.8996 48 1 0.6368 -6.0096 0.0394 49 1 -0.7415 -4.1691 0.9142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075127562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = 116.470841 kcal Electronic energy + Delta-G solvation = -31788.882624 eV Core-core repulsion = 27719.201877 eV Total energy + Delta-G solvation = -4069.680747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.49698 -40.01464 -39.05491 -37.66300 -35.02348 -33.61517 -32.70334 -32.57007 -31.70185 -29.82915 -28.40347 -27.30199 -26.33808 -25.21465 -24.11017 -23.87676 -23.03128 -22.70764 -20.98991 -20.48497 -19.01030 -18.18498 -17.57198 -16.60977 -16.57482 -16.23834 -15.81075 -15.55843 -15.24877 -14.75804 -14.68522 -14.63450 -14.33125 -13.93879 -13.78513 -13.41647 -13.32795 -12.89644 -12.71933 -12.45460 -12.42097 -12.28316 -12.16757 -12.09344 -11.78935 -11.66961 -11.11216 -11.05591 -10.88565 -10.63395 -10.52825 -10.37246 -10.23385 -10.18459 -10.03495 -9.94588 -9.79792 -9.71014 -9.56371 -8.99926 -8.70270 -8.55979 -8.03730 -7.57440 -6.22815 -4.32369 0.62853 1.00543 2.08245 2.35449 2.82515 3.22398 3.30295 3.34035 3.59397 3.94036 4.10652 4.25404 4.35307 4.53067 4.69640 4.82205 4.90246 4.96926 5.04759 5.07993 5.10249 5.14951 5.21736 5.40378 5.45774 5.54329 5.71474 5.83128 5.85039 5.89222 5.92770 5.94087 6.06093 6.09411 6.10069 6.15018 6.22094 6.26591 6.32373 6.38344 6.46003 6.52263 6.62677 6.80212 6.92981 7.10267 7.21634 7.29172 7.55712 7.60930 7.73656 8.00938 8.08195 8.42819 8.78668 9.13161 9.36533 10.81493 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.007777 B = 0.003955 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.593299 B = 7077.729296 C =10139.086946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.159 3.841 3 C -0.273 4.273 4 C 0.596 3.404 5 O -0.571 6.571 6 N -0.588 5.588 7 C 0.219 3.781 8 C -0.543 4.543 9 H 0.065 0.935 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.134 3.866 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.146 4.146 20 C -0.132 4.132 21 C 0.113 3.887 22 N -0.307 5.307 23 N -0.331 5.331 24 C 0.377 3.623 25 C -0.160 4.160 26 C -0.055 4.055 27 C -0.191 4.191 28 C 0.127 3.873 29 N -0.501 5.501 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.241 0.759 46 H 0.148 0.852 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.664 -9.060 0.270 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.032 3.968 3 C -0.287 4.287 4 C 0.385 3.615 5 O -0.453 6.453 6 N -0.317 5.317 7 C 0.099 3.901 8 C -0.582 4.582 9 H 0.083 0.917 10 C -0.138 4.138 11 N -0.522 5.522 12 Si 0.722 3.278 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.011 3.989 17 C -0.143 4.143 18 C -0.160 4.160 19 C -0.183 4.183 20 C -0.170 4.170 21 C -0.075 4.075 22 N -0.123 5.123 23 N -0.107 5.107 24 C 0.150 3.850 25 C -0.182 4.182 26 C -0.082 4.082 27 C -0.212 4.212 28 C -0.031 4.031 29 N -0.214 5.214 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.257 0.743 46 H 0.166 0.834 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.853 -9.407 0.473 15.140 hybrid contribution 1.188 0.196 -0.783 1.436 sum -10.665 -9.211 -0.311 14.095 Atomic orbital electron populations 1.20601 0.86106 1.04140 1.03645 1.21584 0.94897 0.85516 0.94761 1.20201 0.93008 0.93997 1.21497 1.17051 0.83447 0.83683 0.77302 1.90611 1.23488 1.82740 1.48447 1.47914 1.16541 1.07390 1.59806 1.19944 0.76500 0.98177 0.95498 1.21554 0.91377 1.43847 1.01408 0.91669 1.24983 0.98322 0.94669 0.95791 1.69935 1.16436 1.42676 1.23144 0.86529 0.80735 0.78387 0.82162 1.20428 1.20959 1.19588 1.21279 0.98043 0.83492 0.96118 1.22958 0.95875 0.96331 0.99163 1.22901 0.95954 0.97203 0.99961 1.22872 0.97353 0.98591 0.99514 1.22854 0.96809 0.96360 1.01023 1.25967 0.99766 0.90801 0.90939 1.77432 0.92495 1.14396 1.27977 1.45560 1.05817 1.02263 1.57020 1.17767 0.90429 0.82466 0.94322 1.21739 1.02037 0.92467 1.01995 1.21517 0.95507 0.95862 0.95268 1.22127 0.95814 1.01096 1.02141 1.22554 0.99496 0.86068 0.94992 1.67097 1.14263 1.23136 1.16908 0.90074 0.88176 0.90929 0.94804 0.92880 0.92247 0.90216 0.91048 0.89457 0.89622 0.92394 0.90847 0.92061 0.91827 0.90221 0.74343 0.83439 0.84017 0.84291 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.14 36.00 0.33 -1.06 16 2 C 0.16 3.05 6.93 -81.45 -0.56 2.48 16 3 C -0.27 -5.81 5.72 -105.05 -0.60 -6.41 16 4 C 0.60 12.90 7.53 -12.52 -0.09 12.81 16 5 O -0.57 -12.52 13.82 5.27 0.07 -12.45 16 6 N -0.59 -12.45 2.47 -176.34 -0.44 -12.89 16 7 C 0.22 5.12 4.66 -5.20 -0.02 5.09 16 8 C -0.54 -13.57 7.81 -34.44 -0.27 -13.84 16 9 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.69 5.23 -17.82 -0.09 1.59 16 11 N -0.88 -23.41 13.29 55.43 0.74 -22.68 16 12 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 16 C 0.13 2.47 5.27 -4.04 -0.02 2.45 16 17 C -0.12 -1.99 3.92 -89.81 -0.35 -2.34 16 18 C -0.12 -1.87 6.84 -25.83 -0.18 -2.05 16 19 C -0.15 -1.84 8.09 -25.83 -0.21 -2.05 16 20 C -0.13 -1.75 7.65 -25.92 -0.20 -1.95 16 21 C 0.11 2.49 9.61 -16.95 -0.16 2.32 16 22 N -0.31 -6.39 12.01 30.88 0.37 -6.02 16 23 N -0.33 -6.25 3.73 -8.02 -0.03 -6.28 16 24 C 0.38 5.99 7.28 -154.37 -1.12 4.86 16 25 C -0.16 -2.11 9.73 -39.25 -0.38 -2.50 16 26 C -0.06 -0.52 10.17 -39.31 -0.40 -0.92 16 27 C -0.19 -1.57 10.11 -39.42 -0.40 -1.97 16 28 C 0.13 1.25 11.18 -17.57 -0.20 1.06 16 29 N -0.50 -7.00 8.04 -12.29 -0.10 -7.09 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.68 6.41 -51.93 -0.33 1.35 16 32 H 0.07 1.06 6.86 -51.93 -0.36 0.70 16 33 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.05 1.30 4.14 -51.93 -0.22 1.09 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 37 H 0.07 1.33 7.19 -51.93 -0.37 0.95 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.09 1.39 7.72 -51.93 -0.40 0.98 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.24 5.71 4.21 -52.49 -0.22 5.49 16 46 H 0.15 1.99 7.90 -52.49 -0.41 1.57 16 47 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 49 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -29.27 398.90 -10.25 -39.52 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.92 Total: 9.26 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -4.94 Total: -2.41 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.54 Total: -54.96 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.27 -10.25 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075127562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.994 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds