Wall clock time and date at job start Tue Mar 31 2020 05:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99699 * 2 1 4 4 H 1.48500 * 109.46789 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46978 * 299.99630 * 3 2 1 6 6 H 1.48491 * 109.47125 * 60.00131 * 3 2 1 7 7 C 1.37873 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00324 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00082 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97573 * 125.00506 * 10 9 7 12 12 C 1.35249 * 107.85441 * 179.72485 * 11 10 9 13 13 C 1.40399 * 107.87087 * 0.38776 * 12 11 10 14 14 N 1.40182 * 125.97561 * 179.86424 * 13 12 11 15 15 C 1.34777 * 119.99885 * 359.71862 * 14 13 12 16 16 O 1.21602 * 119.99939 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00331 * 180.02562 * 15 14 13 18 18 C 1.39932 * 120.00170 * 185.62764 * 17 15 14 19 19 C 1.38890 * 120.07029 * 24.80083 * 18 17 15 20 20 C 1.38095 * 119.92825 * 180.02562 * 19 18 17 21 21 C 1.38300 * 120.06855 * 0.02562 * 20 19 18 22 22 C 1.38263 * 120.14370 * 359.97438 * 21 20 19 23 23 C 1.38129 * 120.06643 * 0.02562 * 22 21 20 24 24 C 1.50705 * 120.03068 * 179.97438 * 23 22 21 25 25 F 1.39894 * 109.47561 * 0.02562 * 24 23 22 26 26 F 1.39910 * 109.46937 * 120.02305 * 24 23 22 27 27 F 1.39902 * 109.46871 * 240.02087 * 24 23 22 28 28 N 1.31216 * 108.05328 * 359.60418 * 13 12 11 29 29 H 0.96992 * 119.99989 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47291 * 59.99853 * 9 7 2 31 31 H 1.09008 * 109.47061 * 300.00168 * 9 7 2 32 32 H 1.08001 * 126.07377 * 359.97438 * 11 10 9 33 33 H 1.08007 * 126.06346 * 180.23312 * 12 11 10 34 34 H 0.96997 * 120.00395 * 179.72125 * 14 13 12 35 35 H 0.97003 * 119.99771 * 5.62094 * 17 15 14 36 36 H 1.08005 * 120.03664 * 0.02562 * 19 18 17 37 37 H 1.07994 * 119.96437 * 179.72402 * 20 19 18 38 38 H 1.08004 * 119.92886 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.96444 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2422 -4.6223 0.8941 12 6 3.2572 -5.4458 0.5460 13 6 3.8685 -4.9150 -0.6011 14 7 4.9639 -5.4662 -1.2803 15 6 5.5281 -6.6066 -0.8356 16 8 5.0872 -7.1570 0.1550 17 7 6.5816 -7.1364 -1.4882 18 6 7.0932 -8.3792 -1.0985 19 6 6.2790 -9.2913 -0.4397 20 6 6.7870 -10.5168 -0.0560 21 6 8.1052 -10.8359 -0.3267 22 6 8.9183 -9.9301 -0.9823 23 6 8.4161 -8.7027 -1.3687 24 6 9.3033 -7.7157 -2.0828 25 9 10.5804 -8.2648 -2.2395 26 9 8.7623 -7.4273 -3.3404 27 9 9.3907 -6.5387 -1.3316 28 7 3.2317 -3.8157 -0.9295 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.5782 -4.7522 1.7359 33 1 3.5476 -6.3498 1.0607 34 1 5.3159 -5.0270 -2.0702 35 1 6.9852 -6.6562 -2.2281 36 1 5.2496 -9.0425 -0.2277 37 1 6.1557 -11.2247 0.4602 38 1 8.5003 -11.7948 -0.0252 39 1 9.9471 -10.1824 -1.1926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075140812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:41 Heat of formation + Delta-G solvation = -56.583567 kcal Electronic energy + Delta-G solvation = -30340.307216 eV Core-core repulsion = 25449.599338 eV Total energy + Delta-G solvation = -4890.707878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.54752 -48.07397 -47.97060 -41.31306 -40.33300 -39.01483 -35.37123 -34.94665 -33.40194 -32.28999 -31.17280 -29.93344 -29.34617 -26.76483 -26.27284 -24.13645 -22.96400 -22.47249 -21.71392 -20.47133 -20.09650 -19.05856 -18.84947 -18.73036 -18.08716 -17.63518 -16.62430 -16.51646 -15.98925 -15.55217 -15.36287 -15.09208 -14.95435 -14.84068 -14.50389 -14.41239 -14.31886 -14.28628 -14.13535 -14.09567 -13.86233 -13.38597 -13.10289 -12.90004 -12.42203 -12.31734 -12.09940 -11.89536 -11.74529 -11.18251 -10.94290 -10.90487 -10.50768 -10.29572 -10.21652 -9.81561 -9.55373 -9.53590 -8.67440 -8.60952 -8.20877 -7.53728 -6.27250 -4.32323 0.53953 0.90607 1.97618 2.28928 2.44810 2.89499 3.20753 3.21095 3.28323 3.29039 3.35119 3.40781 3.61652 3.67889 4.04056 4.05909 4.30640 4.40866 4.60688 4.83778 4.93332 5.03712 5.08148 5.34356 5.45893 5.63447 5.68295 5.80454 5.94538 6.05893 6.10352 6.37102 6.42938 6.49755 6.72279 6.86753 7.02461 7.30903 7.57781 7.68586 7.85468 7.98698 8.20504 8.55683 8.76972 9.33655 10.81568 Molecular weight = 354.10amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002213 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.083169 B =12651.069412 C =13896.836110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.285 4.285 13 C 0.270 3.730 14 N -0.633 5.633 15 C 0.717 3.283 16 O -0.543 6.543 17 N -0.685 5.685 18 C 0.231 3.769 19 C -0.134 4.134 20 C -0.063 4.063 21 C -0.147 4.147 22 C -0.052 4.052 23 C -0.226 4.226 24 C 0.509 3.491 25 F -0.174 7.174 26 F -0.180 7.180 27 F -0.173 7.173 28 N -0.301 5.301 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.410 0.590 35 H 0.409 0.591 36 H 0.163 0.837 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.778 -22.280 -3.009 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.097 4.097 12 C -0.317 4.317 13 C 0.016 3.984 14 N -0.282 5.282 15 C 0.417 3.583 16 O -0.417 6.417 17 N -0.332 5.332 18 C 0.133 3.867 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.166 4.166 22 C -0.070 4.070 23 C -0.231 4.231 24 C 0.455 3.545 25 F -0.156 7.156 26 F -0.161 7.161 27 F -0.154 7.154 28 N -0.132 5.132 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.187 0.813 33 H 0.179 0.821 34 H 0.246 0.754 35 H 0.246 0.754 36 H 0.180 0.820 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.995 -21.441 -2.978 26.915 hybrid contribution 1.025 1.091 -0.397 1.549 sum 17.019 -20.349 -3.375 26.742 Atomic orbital electron populations 1.69922 1.06040 1.27568 1.49786 1.24946 0.94988 0.99578 0.94574 0.86275 0.80070 0.82446 0.77742 1.19556 1.20682 1.20735 1.21290 0.94031 0.89346 1.52022 0.91240 1.19778 0.85573 0.81271 0.99360 1.49108 1.23104 1.19759 1.17935 1.22575 1.00300 0.90045 0.96751 1.21487 1.02091 1.06378 1.01704 1.18718 0.90638 0.94392 0.94607 1.41284 1.31228 1.24580 1.31149 1.15461 0.79657 0.80578 0.82577 1.90855 1.63707 1.61634 1.25464 1.42764 1.33498 1.19966 1.36936 1.17143 0.89974 0.84309 0.95292 1.21595 1.02019 0.92090 0.99763 1.21352 0.95341 0.95667 0.95792 1.21127 0.94206 1.00150 1.01074 1.20784 1.00402 0.90896 0.94949 1.19632 0.92902 0.98224 1.12354 1.18271 0.78967 0.80375 0.76935 1.93163 1.41371 1.85374 1.95654 1.93198 1.85608 1.94073 1.43239 1.93264 1.96247 1.49861 1.76057 1.77351 1.03648 1.15980 1.16259 0.92348 0.93636 0.92428 0.81347 0.82100 0.75434 0.75379 0.82004 0.84607 0.84812 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.53 9.24 -34.44 -0.32 -14.84 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.42 6.26 -5.19 -0.03 6.39 16 10 N -0.32 -7.18 3.67 -62.56 -0.23 -7.41 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.39 9.61 -39.83 -0.38 -5.77 16 13 C 0.27 5.22 8.11 -154.37 -1.25 3.96 16 14 N -0.63 -9.45 5.45 -15.51 -0.08 -9.54 16 15 C 0.72 10.06 8.34 -86.92 -0.72 9.34 16 16 O -0.54 -8.73 10.64 5.28 0.06 -8.68 16 17 N -0.68 -7.53 4.90 -14.22 -0.07 -7.60 16 18 C 0.23 2.45 6.33 -83.69 -0.53 1.92 16 19 C -0.13 -1.38 8.72 -39.39 -0.34 -1.72 16 20 C -0.06 -0.48 10.04 -39.61 -0.40 -0.87 16 21 C -0.15 -0.95 10.04 -39.55 -0.40 -1.35 16 22 C -0.05 -0.38 9.43 -39.61 -0.37 -0.76 16 23 C -0.23 -2.11 5.38 -104.43 -0.56 -2.67 16 24 C 0.51 4.78 2.83 36.01 0.10 4.88 16 25 F -0.17 -1.56 15.97 2.25 0.04 -1.52 16 26 F -0.18 -1.64 15.88 2.25 0.04 -1.61 16 27 F -0.17 -1.86 16.75 2.25 0.04 -1.82 16 28 N -0.30 -6.74 12.42 31.44 0.39 -6.35 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.92 -0.42 0.99 16 32 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.16 2.90 5.91 -52.48 -0.31 2.59 16 34 H 0.41 4.99 8.84 -40.82 -0.36 4.63 16 35 H 0.41 3.73 6.65 -40.82 -0.27 3.46 16 36 H 0.16 1.90 5.79 -52.48 -0.30 1.60 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 39 H 0.14 0.77 7.16 -52.49 -0.38 0.39 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -31.67 351.88 -7.59 -39.26 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.28 Total: 7.18 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -5.51 Total: 0.92 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.74 Total: -55.24 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.06 Total: -8.68 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.11 Total: -4.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.67 -7.59 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075140812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.326 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds