Wall clock time and date at job start Tue Mar 31 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47085 * 299.99542 * 3 2 1 6 6 H 1.48502 * 109.46963 * 59.99545 * 3 2 1 7 7 C 1.37879 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99966 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46941 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99803 * 74.14972 * 10 9 7 12 12 C 1.52999 * 109.47243 * 93.45537 * 11 10 9 13 13 F 1.39904 * 109.47508 * 59.99360 * 12 11 10 14 14 F 1.39897 * 109.47544 * 180.02562 * 12 11 10 15 15 F 1.39911 * 109.46861 * 299.99925 * 12 11 10 16 16 C 1.34781 * 120.00316 * 254.14598 * 10 9 7 17 17 O 1.21552 * 120.00257 * 183.18334 * 16 10 9 18 18 C 1.47845 * 119.99853 * 3.18379 * 16 10 9 19 19 C 1.39602 * 120.14291 * 27.89459 * 18 16 10 20 20 C 1.37937 * 119.85133 * 179.79308 * 19 18 16 21 21 C 1.38380 * 120.14293 * 0.48079 * 20 19 18 22 22 C 1.38337 * 120.29490 * 359.74753 * 21 20 19 23 23 C 1.50701 * 119.92633 * 179.97438 * 22 21 20 24 24 F 1.39896 * 109.47515 * 270.02228 * 23 22 21 25 25 F 1.39902 * 109.47008 * 30.02784 * 23 22 21 26 26 F 1.39902 * 109.46688 * 150.02245 * 23 22 21 27 27 C 1.37974 * 120.14422 * 0.02562 * 22 21 20 28 28 H 0.97003 * 120.00072 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47729 * 300.00549 * 9 7 2 30 30 H 1.09008 * 109.46314 * 60.00522 * 9 7 2 31 31 H 1.09000 * 109.47297 * 213.45075 * 11 10 9 32 32 H 1.08995 * 109.47299 * 333.45147 * 11 10 9 33 33 H 1.07996 * 120.07389 * 359.97438 * 19 18 16 34 34 H 1.07996 * 119.92747 * 180.21181 * 20 19 18 35 35 H 1.08011 * 119.85418 * 179.76859 * 21 20 19 36 36 H 1.08005 * 120.07437 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 2.9433 -3.9436 1.2215 12 6 2.1884 -5.0237 1.9990 13 9 2.0629 -6.1685 1.2046 14 9 2.8950 -5.3394 3.1644 15 9 0.9165 -4.5505 2.3391 16 6 2.3977 -4.3326 -1.1212 17 8 3.1438 -5.2921 -1.1061 18 6 1.7039 -3.9553 -2.3710 19 6 1.3409 -2.6265 -2.5976 20 6 0.6975 -2.2805 -3.7676 21 6 0.4030 -3.2488 -4.7112 22 6 0.7557 -4.5682 -4.4908 23 6 0.4304 -5.6161 -5.5238 24 9 -0.8341 -6.1537 -5.2607 25 9 0.4341 -5.0338 -6.7959 26 9 1.3893 -6.6335 -5.4739 27 6 1.4037 -4.9269 -3.3267 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5564 0.8918 30 1 0.6241 -2.5574 -0.8882 31 1 3.9342 -4.3123 0.9566 32 1 3.0410 -3.0518 1.8405 33 1 1.5659 -1.8707 -1.8597 34 1 0.4192 -1.2523 -3.9457 35 1 -0.1043 -2.9733 -5.6242 36 1 1.6790 -5.9572 -3.1559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076092263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:43 Heat of formation + Delta-G solvation = -297.758101 kcal Electronic energy + Delta-G solvation = -32596.357701 eV Core-core repulsion = 27023.323556 eV Total energy + Delta-G solvation = -5573.034144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.10380 -49.67812 -47.62512 -47.55946 -47.23946 -47.11350 -40.20017 -38.18330 -35.70819 -33.12130 -32.14644 -31.13823 -29.34011 -27.46619 -25.83865 -24.13572 -23.37559 -22.35683 -21.91400 -19.76766 -18.43298 -18.39134 -18.24220 -18.12071 -17.84515 -17.40946 -16.49145 -16.35346 -15.86927 -15.65383 -14.77873 -14.69394 -14.49055 -14.33893 -14.18001 -14.06062 -14.03749 -13.90498 -13.87527 -13.73107 -13.67665 -13.61868 -13.32776 -13.30565 -13.17715 -12.88615 -12.66659 -12.51466 -12.06470 -11.79679 -11.76124 -11.39543 -11.18488 -11.11599 -10.54663 -10.32074 -10.06731 -9.55488 -9.03804 -8.90861 -8.66132 -8.25600 -6.50287 -4.62368 0.97615 1.26815 2.70161 2.87893 3.04156 3.11692 3.15479 3.20857 3.38701 3.80604 3.86447 4.06434 4.10990 4.26083 4.43096 4.50596 4.63939 4.80498 4.85541 5.01389 5.15670 5.45697 5.50854 5.56527 5.66827 5.86068 5.98486 6.20765 6.25598 6.58100 6.64673 6.87628 7.00341 7.08531 7.41993 7.63378 7.85685 8.40397 8.55733 9.07252 10.54578 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.008594 B = 0.004562 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.320884 B = 6136.647331 C = 8659.312353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.588 5.588 11 C 0.085 3.915 12 C 0.430 3.570 13 F -0.178 7.178 14 F -0.190 7.190 15 F -0.180 7.180 16 C 0.561 3.439 17 O -0.544 6.544 18 C -0.138 4.138 19 C -0.053 4.053 20 C -0.134 4.134 21 C -0.051 4.051 22 C -0.213 4.213 23 C 0.512 3.488 24 F -0.179 7.179 25 F -0.180 7.180 26 F -0.178 7.178 27 C -0.018 4.018 28 H 0.271 0.729 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.204 0.796 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -4.816 -5.023 7.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.090 3.910 10 N -0.318 5.318 11 C -0.042 4.042 12 C 0.374 3.626 13 F -0.159 7.159 14 F -0.171 7.171 15 F -0.162 7.162 16 C 0.351 3.649 17 O -0.423 6.423 18 C -0.140 4.140 19 C -0.070 4.070 20 C -0.152 4.152 21 C -0.070 4.070 22 C -0.214 4.214 23 C 0.458 3.542 24 F -0.160 7.160 25 F -0.161 7.161 26 F -0.159 7.159 27 C -0.037 4.037 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.220 0.780 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.996 -5.239 -5.021 7.324 hybrid contribution 0.024 0.592 0.040 0.594 sum 1.020 -4.646 -4.981 6.887 Atomic orbital electron populations 1.69938 1.06061 1.28038 1.46895 1.25009 0.94918 0.99598 0.93887 0.86413 0.80232 0.82672 0.78163 1.19345 1.20463 1.20533 1.21441 0.94133 0.89996 1.53821 0.91150 1.20405 0.87783 0.82142 1.00705 1.47973 1.42726 1.33456 1.07663 1.22425 0.96020 0.97353 0.88357 1.21539 0.78830 0.83957 0.78224 1.93214 1.96007 1.53154 1.73544 1.93141 1.78678 1.93865 1.51442 1.93196 1.42118 1.88132 1.92732 1.18280 0.81357 0.81900 0.83407 1.90744 1.38369 1.27833 1.85392 1.19767 1.04207 0.94589 0.95482 1.23594 0.88834 0.97483 0.97080 1.21231 1.00523 0.99847 0.93559 1.21118 0.95536 0.91081 0.99241 1.19693 1.10571 0.94136 0.97010 1.18265 0.74358 0.80960 0.80574 1.93215 1.41609 1.87334 1.93855 1.93167 1.96278 1.84157 1.42539 1.93190 1.64070 1.62271 1.96381 1.20876 0.92255 1.00214 0.90356 0.91901 0.93802 0.91576 0.86643 0.85153 0.78027 0.84346 0.84969 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.91 13.29 55.43 0.74 -20.17 16 2 C 0.07 1.64 5.42 -17.82 -0.10 1.54 16 3 Si 0.90 17.90 29.54 -169.99 -5.02 12.88 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.56 -12.18 7.04 -34.44 -0.24 -12.42 16 8 H 0.07 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.21 4.33 4.56 -5.20 -0.02 4.31 16 10 N -0.59 -11.18 2.43 -176.18 -0.43 -11.61 16 11 C 0.09 1.40 5.35 -4.04 -0.02 1.38 16 12 C 0.43 7.24 3.29 37.16 0.12 7.36 16 13 F -0.18 -3.29 15.72 2.25 0.04 -3.25 16 14 F -0.19 -2.93 17.32 2.25 0.04 -2.90 16 15 F -0.18 -3.26 16.38 2.25 0.04 -3.22 16 16 C 0.56 10.95 7.06 -12.33 -0.09 10.87 16 17 O -0.54 -11.38 15.23 5.32 0.08 -11.30 16 18 C -0.14 -2.48 5.49 -104.97 -0.58 -3.06 16 19 C -0.05 -0.93 7.42 -39.18 -0.29 -1.22 16 20 C -0.13 -2.00 10.03 -39.64 -0.40 -2.40 16 21 C -0.05 -0.70 9.39 -39.49 -0.37 -1.07 16 22 C -0.21 -3.13 5.45 -104.68 -0.57 -3.70 16 23 C 0.51 7.00 3.36 36.01 0.12 7.12 16 24 F -0.18 -2.49 17.30 2.25 0.04 -2.45 16 25 F -0.18 -2.33 16.45 2.25 0.04 -2.29 16 26 F -0.18 -2.50 16.46 2.25 0.04 -2.47 16 27 C -0.02 -0.30 8.94 -39.19 -0.35 -0.65 16 28 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 29 H 0.04 0.99 7.37 -51.93 -0.38 0.61 16 30 H 0.07 1.42 4.23 -51.92 -0.22 1.20 16 31 H 0.12 1.77 7.58 -51.93 -0.39 1.38 16 32 H 0.13 1.98 7.86 -51.93 -0.41 1.57 16 33 H 0.20 3.97 3.39 -52.49 -0.18 3.80 16 34 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.13 1.46 7.59 -52.48 -0.40 1.06 16 36 H 0.14 2.23 7.44 -52.48 -0.39 1.84 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -24.70 333.90 -4.50 -29.20 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.34 Total: 4.47 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -2.78 Total: 8.07 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.31 Total: -31.78 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 9 Polarization: -16.80 SS G_CDS: 0.22 Total: -16.57 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -24.70 -4.50 -29.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -268.559 kcal (2) G-P(sol) polarization free energy of solvation -24.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds