Wall clock time and date at job start Tue Mar 31 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47049 * 2 1 4 4 C 1.38258 * 119.99908 * 265.02388 * 3 2 1 5 5 C 1.38216 * 119.99683 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00145 * 0.02562 * 5 4 3 7 7 C 1.38210 * 119.99793 * 359.70822 * 6 5 4 8 8 C 1.38206 * 120.00005 * 85.00085 * 3 2 1 9 9 C 1.50705 * 120.00016 * 0.02562 * 8 3 2 10 10 N 1.46504 * 109.46942 * 80.00321 * 9 8 3 11 11 C 1.34776 * 119.99835 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00194 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00093 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47192 * 180.02562 * 14 13 11 16 16 C 1.38328 * 119.96230 * 269.98024 * 15 14 13 17 17 C 1.38281 * 120.13505 * 180.02562 * 16 15 14 18 18 C 1.38120 * 120.06679 * 359.68445 * 17 16 15 19 19 C 1.38852 * 119.93490 * 0.58817 * 18 17 16 20 20 O 1.35752 * 120.07221 * 179.70368 * 19 18 17 21 21 C 1.34829 * 116.99954 * 354.17311 * 20 19 18 22 22 H 1.07998 * 119.99999 * 5.03596 * 21 20 19 23 23 C 1.38656 * 119.99670 * 185.03445 * 21 20 19 24 24 N 1.31550 * 120.00275 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99668 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47010 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46908 * 119.99967 * 25 23 21 28 28 H 1.48504 * 109.47373 * 240.00300 * 25 23 21 29 29 C 1.38073 * 119.96534 * 89.99825 * 15 14 13 30 30 H 1.09007 * 109.47095 * 299.99826 * 1 2 3 31 31 H 1.08997 * 109.47416 * 59.99691 * 1 2 3 32 32 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46943 * 240.00581 * 2 1 3 34 34 H 1.08997 * 109.47416 * 120.00309 * 2 1 3 35 35 H 1.08002 * 120.00063 * 359.97438 * 4 3 2 36 36 H 1.08004 * 119.99754 * 180.02562 * 5 4 3 37 37 H 1.08003 * 119.99812 * 179.97438 * 6 5 4 38 38 H 1.08002 * 120.00008 * 180.29182 * 7 6 5 39 39 H 1.08997 * 109.46955 * 320.00157 * 9 8 3 40 40 H 1.08995 * 109.47053 * 199.99844 * 9 8 3 41 41 H 0.97005 * 119.99925 * 359.97438 * 10 9 8 42 42 H 0.97004 * 119.99718 * 0.02562 * 13 11 10 43 43 H 1.09002 * 109.46490 * 60.00223 * 14 13 11 44 44 H 1.08992 * 109.46880 * 300.00477 * 14 13 11 45 45 H 1.08001 * 119.93314 * 0.02562 * 16 15 14 46 46 H 1.07993 * 119.96315 * 179.97438 * 17 16 15 47 47 H 1.08006 * 120.03715 * 180.31908 * 18 17 16 48 48 H 0.96999 * 119.99936 * 179.97438 * 24 23 21 49 49 H 1.07996 * 120.03547 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8208 3.3413 -1.1928 6 6 2.9533 4.0276 0.0000 7 6 2.6198 3.4125 1.1919 8 6 2.1643 2.1072 1.1923 9 6 1.8064 1.4344 2.4926 10 7 2.9090 0.5660 2.9127 11 6 2.8114 -0.1419 4.0554 12 8 1.8086 -0.0594 4.7379 13 7 3.8256 -0.9412 4.4416 14 6 3.7198 -1.7103 5.6841 15 6 4.9774 -2.5159 5.8849 16 6 5.0664 -3.7972 5.3713 17 6 6.2186 -4.5398 5.5539 18 6 7.2868 -4.0013 6.2444 19 6 7.1984 -2.7175 6.7660 20 8 8.2443 -2.1878 7.4503 21 6 9.2920 -3.0011 7.6927 22 1 9.3093 -3.9979 7.2774 23 6 10.3472 -2.5577 8.4754 24 7 10.3259 -1.3437 8.9817 25 14 11.7984 -3.6848 8.8119 26 1 11.5808 -4.9879 8.1337 27 1 13.0416 -3.0592 8.2938 28 1 11.9267 -3.9032 10.2752 29 6 6.0395 -1.9744 6.5815 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.2575 1.5017 -2.1246 36 1 3.0769 3.8235 -2.1247 37 1 3.3133 5.0459 0.0000 38 1 2.7189 3.9502 2.1233 39 1 0.9049 0.8371 2.3565 40 1 1.6289 2.1914 3.2564 41 1 3.7090 0.4999 2.3680 42 1 4.6258 -1.0067 3.8973 43 1 2.8634 -2.3819 5.6238 44 1 3.5879 -1.0278 6.5236 45 1 4.2344 -4.2185 4.8267 46 1 6.2849 -5.5400 5.1522 47 1 8.1883 -4.5799 6.3822 48 1 11.0640 -1.0337 9.5295 49 1 5.9690 -0.9742 6.9828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077576482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:47 Heat of formation + Delta-G solvation = -17.828764 kcal Electronic energy + Delta-G solvation = -29433.423717 eV Core-core repulsion = 25325.626551 eV Total energy + Delta-G solvation = -4107.797166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.42865 -39.60587 -39.01820 -36.86596 -35.32730 -34.41222 -34.21632 -32.34788 -31.74196 -30.55102 -29.72937 -29.11469 -26.77868 -25.59090 -24.84946 -24.05742 -22.22608 -21.71801 -20.98928 -20.85295 -20.75614 -18.63801 -17.68082 -17.14718 -16.69946 -16.38541 -16.14183 -15.45096 -15.35883 -15.08425 -14.60960 -14.55346 -14.45953 -14.14968 -14.12918 -13.81331 -13.61559 -13.54466 -13.37866 -13.24121 -12.98915 -12.62581 -12.38361 -12.37260 -12.12945 -12.07265 -11.67702 -11.58002 -11.38760 -11.15135 -11.03715 -10.95712 -10.81483 -10.69419 -10.47077 -10.24448 -9.41383 -9.29601 -9.20573 -9.00723 -8.90499 -8.75152 -8.25360 -7.33412 -6.49957 -4.09397 0.88270 1.03696 1.87955 2.26266 2.87715 3.09194 3.10638 3.16075 3.26789 3.46624 3.91781 4.30535 4.32149 4.40158 4.54602 4.58340 4.66361 4.82782 4.93753 4.97164 5.05653 5.06544 5.15687 5.19884 5.28520 5.35672 5.44041 5.54641 5.55950 5.63603 5.67373 5.77452 5.78890 5.85135 5.92606 5.94996 6.07314 6.12794 6.15995 6.25062 6.30497 6.35373 6.55324 6.57229 6.64004 6.81575 6.92648 7.00698 7.19270 7.27183 7.35335 7.70573 7.94283 8.04722 8.63815 8.95532 9.64385 10.67883 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.001781 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.189912 B =15718.617989 C =16568.263821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.061 4.061 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.128 4.128 7 C -0.096 4.096 8 C -0.107 4.107 9 C 0.180 3.820 10 N -0.744 5.744 11 C 0.704 3.296 12 O -0.595 6.595 13 N -0.736 5.736 14 C 0.187 3.813 15 C -0.072 4.072 16 C -0.194 4.194 17 C -0.077 4.077 18 C -0.225 4.225 19 C 0.150 3.850 20 O -0.177 6.177 21 C -0.393 4.393 22 H 0.093 0.907 23 C 0.039 3.961 24 N -0.861 5.861 25 Si 0.941 3.059 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.275 1.275 29 C -0.170 4.170 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.397 0.603 42 H 0.399 0.601 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.127 0.873 48 H 0.270 0.730 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.336 5.307 -19.966 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.061 4.061 4 C -0.140 4.140 5 C -0.128 4.128 6 C -0.146 4.146 7 C -0.114 4.114 8 C -0.107 4.107 9 C 0.056 3.944 10 N -0.401 5.401 11 C 0.403 3.597 12 O -0.473 6.473 13 N -0.391 5.391 14 C 0.064 3.936 15 C -0.073 4.073 16 C -0.213 4.213 17 C -0.095 4.095 18 C -0.245 4.245 19 C 0.096 3.904 20 O -0.080 6.080 21 C -0.469 4.469 22 H 0.110 0.890 23 C -0.165 4.165 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.201 1.201 29 C -0.190 4.190 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.231 0.769 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.080 0.920 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.095 5.749 -19.043 25.588 hybrid contribution 1.661 -0.592 -0.400 1.808 sum -14.434 5.157 -19.443 24.758 Atomic orbital electron populations 1.21748 0.94470 1.02026 1.02166 1.20645 0.96507 0.92484 1.03380 1.19836 0.97610 0.96173 0.92516 1.21054 1.00224 0.95239 0.97488 1.21197 0.98793 0.94681 0.98175 1.21155 1.00728 1.00180 0.92492 1.21138 0.97494 0.94299 0.98485 1.19773 1.02007 0.94752 0.94189 1.20014 0.89505 0.92838 0.92056 1.45147 1.21296 1.48817 1.24823 1.15941 0.83632 0.78955 0.81124 1.90917 1.31028 1.69832 1.55573 1.45260 1.19392 1.47737 1.26693 1.19994 0.95140 0.93119 0.85366 1.19282 0.94127 0.94648 0.99263 1.20486 0.98800 0.95155 1.06907 1.20745 0.93035 0.98428 0.97299 1.21240 1.00618 0.97171 1.05478 1.19332 0.88327 0.91467 0.91278 1.83983 1.22943 1.38152 1.62920 1.21371 0.95736 0.97335 1.32439 0.88986 1.25302 0.98650 0.96918 0.95665 1.70043 1.31961 1.16249 1.31286 0.85642 0.79877 0.79263 0.78610 1.19091 1.20131 1.20097 1.20100 0.92024 1.00788 1.06056 0.92281 0.92625 0.92188 0.90987 0.90264 0.86006 0.86038 0.85916 0.85699 0.90502 0.90972 0.76935 0.76743 0.91118 0.91038 0.87496 0.87312 0.85487 0.92003 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.75 37.16 0.36 -0.65 16 2 C -0.09 -0.67 5.40 -27.88 -0.15 -0.82 16 3 C -0.06 -0.48 5.13 -104.62 -0.54 -1.02 16 4 C -0.12 -0.88 9.68 -39.58 -0.38 -1.27 16 5 C -0.11 -0.76 10.05 -39.58 -0.40 -1.16 16 6 C -0.13 -0.93 10.05 -39.59 -0.40 -1.32 16 7 C -0.10 -0.77 9.67 -39.58 -0.38 -1.15 16 8 C -0.11 -0.90 5.25 -104.62 -0.55 -1.45 16 9 C 0.18 1.75 4.96 -5.19 -0.03 1.72 16 10 N -0.74 -7.75 4.88 -66.41 -0.32 -8.08 16 11 C 0.70 9.76 8.57 -86.91 -0.74 9.01 16 12 O -0.59 -10.50 16.34 5.29 0.09 -10.41 16 13 N -0.74 -9.70 5.55 -66.42 -0.37 -10.07 16 14 C 0.19 2.77 5.80 -5.19 -0.03 2.74 16 15 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 16 C -0.19 -3.14 9.70 -39.53 -0.38 -3.52 16 17 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 18 C -0.23 -4.68 9.17 -39.40 -0.36 -5.05 16 19 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 20 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 21 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 22 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 23 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 24 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 25 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 28 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 29 C -0.17 -3.42 9.65 -39.39 -0.38 -3.80 16 30 H 0.06 0.44 6.72 -51.92 -0.35 0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.08 0.65 6.60 -51.93 -0.34 0.31 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 37 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.13 0.90 8.04 -52.49 -0.42 0.47 16 39 H 0.08 0.78 5.85 -51.93 -0.30 0.48 16 40 H 0.07 0.75 8.00 -51.93 -0.42 0.33 16 41 H 0.40 3.45 8.48 -40.82 -0.35 3.10 16 42 H 0.40 4.66 8.48 -40.82 -0.35 4.31 16 43 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 44 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 45 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 48 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -32.28 410.96 -10.92 -43.19 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.87 Total: 10.56 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -5.37 Total: -17.48 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.07 Total: -42.29 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.28 -10.92 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077576482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.364 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds