Wall clock time and date at job start Tue Mar 31 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48498 * 109.46924 * 270.00353 * 3 2 1 5 5 H 1.48497 * 109.47073 * 29.99862 * 3 2 1 6 6 H 1.48497 * 109.47357 * 150.00103 * 3 2 1 7 7 C 1.39886 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99952 * 175.55775 * 7 2 1 9 9 C 1.41154 * 120.00438 * 355.55789 * 7 2 1 10 10 C 1.40870 * 120.16809 * 214.78184 * 9 7 2 11 11 C 1.36373 * 119.82813 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.16976 * 0.02562 * 11 10 9 13 13 N 1.39250 * 119.83284 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00101 * 144.76595 * 13 12 11 15 15 O 1.21584 * 119.99629 * 4.03488 * 14 13 12 16 16 N 1.34770 * 119.99959 * 184.03037 * 14 13 12 17 17 C 1.46508 * 119.99838 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.46870 * 325.00588 * 17 16 14 19 19 C 1.53000 * 109.46729 * 85.00046 * 17 16 14 20 20 C 1.52995 * 109.47547 * 294.99725 * 19 17 16 21 21 C 1.53000 * 109.47547 * 180.02562 * 20 19 17 22 22 O 1.42893 * 109.47329 * 180.02562 * 21 20 19 23 23 C 1.50696 * 109.47018 * 205.00000 * 17 16 14 24 24 C 1.38233 * 120.00374 * 319.73025 * 23 17 16 25 25 C 1.38230 * 120.00102 * 179.78682 * 24 23 17 26 26 C 1.38234 * 120.00063 * 0.44223 * 25 24 23 27 27 C 1.38229 * 120.00207 * 359.80915 * 26 25 24 28 28 C 1.38238 * 119.99992 * 359.97438 * 27 26 25 29 29 C 1.39476 * 120.33261 * 0.27099 * 12 11 10 30 30 C 1.36371 * 120.17190 * 359.44607 * 29 12 11 31 31 H 0.96998 * 119.99684 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.08427 * 0.02562 * 10 9 7 33 33 H 1.08000 * 119.91329 * 179.97438 * 11 10 9 34 34 H 0.97001 * 119.99787 * 324.49446 * 13 12 11 35 35 H 0.96992 * 120.00347 * 0.02562 * 16 14 13 36 36 H 1.08999 * 109.47500 * 55.00378 * 19 17 16 37 37 H 1.09003 * 109.46736 * 174.99956 * 19 17 16 38 38 H 1.08999 * 109.47254 * 300.00805 * 20 19 17 39 39 H 1.09003 * 109.46914 * 60.00340 * 20 19 17 40 40 H 1.08994 * 109.47067 * 300.00801 * 21 20 19 41 41 H 1.09003 * 109.46736 * 60.00231 * 21 20 19 42 42 H 0.96700 * 114.00269 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.99980 * 359.97438 * 24 23 17 44 44 H 1.08000 * 120.00031 * 180.26788 * 25 24 23 45 45 H 1.08007 * 120.00096 * 179.83088 * 26 25 24 46 46 H 1.08001 * 120.00580 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00479 * 180.02562 * 28 27 26 48 48 H 1.08009 * 119.91444 * 179.70614 * 29 12 11 49 49 H 1.07997 * 120.08985 * 180.26396 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4403 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2128 -0.0730 9 6 1.3058 -2.4321 0.0936 10 6 1.8650 -3.5186 0.7945 11 6 1.1805 -4.6949 0.8807 12 6 -0.0700 -4.8241 0.2766 13 7 -0.7626 -6.0286 0.3685 14 6 -2.1067 -6.0272 0.4671 15 8 -2.7199 -4.9793 0.4021 16 7 -2.7711 -7.1873 0.6377 17 6 -4.2323 -7.1859 0.7444 18 1 -4.5574 -6.2867 1.2678 19 6 -4.8458 -7.2103 -0.6570 20 6 -4.4924 -5.9154 -1.3912 21 6 -5.1065 -5.9396 -2.7923 22 8 -4.7758 -4.7305 -3.4783 23 6 -4.6812 -8.4033 1.5107 24 6 -4.0658 -9.6221 1.2943 25 6 -4.4746 -10.7378 2.0004 26 6 -5.5051 -10.6369 2.9163 27 6 -6.1240 -9.4194 3.1290 28 6 -5.7122 -8.3025 2.4261 29 6 -0.6275 -3.7548 -0.4244 30 6 0.0425 -2.5704 -0.5143 31 1 -0.4849 0.8401 0.0004 32 1 2.8334 -3.4202 1.2624 33 1 1.6082 -5.5289 1.4173 34 1 -0.2780 -6.8688 0.3575 35 1 -2.2819 -8.0232 0.6899 36 1 -4.4514 -8.0618 -1.2115 37 1 -5.9294 -7.2988 -0.5776 38 1 -4.8868 -5.0640 -0.8366 39 1 -3.4088 -5.8269 -1.4705 40 1 -4.7125 -6.7911 -3.3471 41 1 -6.1900 -6.0279 -2.7126 42 1 -5.1335 -4.6765 -4.3751 43 1 -3.2634 -9.7018 0.5757 44 1 -3.9909 -11.6891 1.8345 45 1 -5.8264 -11.5093 3.4660 46 1 -6.9288 -9.3404 3.8448 47 1 -6.1954 -7.3511 2.5925 48 1 -1.5942 -3.8638 -0.8936 49 1 -0.3923 -1.7420 -1.0537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077672574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:31 Heat of formation + Delta-G solvation = -33.640769 kcal Electronic energy + Delta-G solvation = -30678.914977 eV Core-core repulsion = 26570.432151 eV Total energy + Delta-G solvation = -4108.482826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.44766 -39.31145 -37.59640 -36.95303 -35.68421 -34.23554 -33.07877 -32.31652 -31.40740 -31.08483 -29.37864 -28.77204 -27.41391 -24.87211 -23.89099 -22.99944 -21.71584 -21.32220 -21.06606 -20.39674 -19.91331 -18.08809 -17.31289 -17.20902 -17.15476 -16.43246 -15.97101 -15.41401 -15.31573 -15.13948 -14.88120 -14.44353 -14.06894 -13.90451 -13.72513 -13.58873 -13.47616 -13.12926 -12.93178 -12.69572 -12.50147 -12.16384 -11.99421 -11.95084 -11.65147 -11.36547 -11.32756 -11.11732 -10.98767 -10.97367 -10.84393 -10.76865 -10.40113 -9.91439 -9.86028 -9.76944 -9.47944 -9.20591 -9.08532 -8.97868 -8.80548 -8.65188 -7.40546 -6.76743 -6.49333 -4.23155 1.03432 1.11596 2.77086 3.05626 3.14455 3.16781 3.18588 3.25890 3.52205 3.78419 4.06413 4.13492 4.54145 4.59564 4.67277 4.71649 4.82516 4.84338 5.00742 5.03053 5.20169 5.21762 5.29166 5.33364 5.51191 5.63271 5.68361 5.69996 5.75761 5.80117 5.87757 6.16113 6.21834 6.22748 6.27635 6.33699 6.48043 6.61874 6.68516 6.69944 6.91077 6.95693 7.15027 7.24951 7.39008 7.48173 7.70700 7.75802 7.92888 8.13571 8.19742 8.40422 8.55901 8.78482 9.03324 9.04468 9.20226 10.41593 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.002363 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.069164 B =11847.787995 C =13037.704910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.464 4.464 8 H 0.074 0.926 9 C 0.098 3.902 10 C -0.204 4.204 11 C -0.117 4.117 12 C 0.026 3.974 13 N -0.669 5.669 14 C 0.694 3.306 15 O -0.564 6.564 16 N -0.747 5.747 17 C 0.207 3.793 18 H 0.099 0.901 19 C -0.119 4.119 20 C -0.116 4.116 21 C 0.077 3.923 22 O -0.567 6.567 23 C -0.085 4.085 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.107 4.107 29 C -0.092 4.092 30 C -0.142 4.142 31 H 0.277 0.723 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.389 0.611 35 H 0.390 0.610 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.373 0.627 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.111 0.889 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 -20.331 0.221 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.495 4.495 8 H 0.092 0.908 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.138 4.138 12 C -0.066 4.066 13 N -0.315 5.315 14 C 0.395 3.605 15 O -0.439 6.439 16 N -0.405 5.405 17 C 0.101 3.899 18 H 0.117 0.883 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.001 4.001 22 O -0.371 6.371 23 C -0.086 4.086 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.125 4.125 29 C -0.112 4.112 30 C -0.162 4.162 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.222 0.778 35 H 0.224 0.776 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.219 0.781 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.128 0.872 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.881 -19.043 0.750 23.002 hybrid contribution 0.482 -0.350 -0.298 0.667 sum -12.398 -19.393 0.452 23.022 Atomic orbital electron populations 1.69804 1.07169 1.28599 1.37955 1.25874 0.94916 1.01049 0.92801 0.86232 0.80145 0.80785 0.78967 1.19601 1.20376 1.18855 1.19440 0.94541 0.90256 1.45306 0.90796 1.17720 0.92328 0.91842 0.88597 1.20658 1.01090 0.94638 1.06060 1.20038 0.95234 0.97485 1.01041 1.17071 0.94569 0.86419 1.08562 1.42112 1.04425 1.08361 1.76616 1.15968 0.82143 0.83882 0.78483 1.90969 1.66786 1.29844 1.56341 1.45253 1.06396 1.08214 1.80625 1.19582 0.79423 0.96063 0.94786 0.88333 1.21920 1.00526 0.98199 0.95171 1.21591 1.03139 0.97554 0.93044 1.22226 0.97599 0.86233 0.94059 1.86620 1.78931 1.40159 1.31407 1.19987 0.96806 0.94685 0.97133 1.20944 1.00026 0.92298 0.99871 1.21129 0.97363 0.98468 0.96631 1.21173 0.96662 0.97732 0.98507 1.21154 1.00006 0.92792 0.99570 1.21068 0.96796 0.99069 0.95587 1.20692 0.99151 0.93184 0.98194 1.21311 0.96902 0.96074 1.01923 0.91179 0.88680 0.89370 0.77835 0.77596 0.91796 0.91163 0.90392 0.90089 0.94487 0.94394 0.78085 0.86117 0.86021 0.86159 0.85927 0.85639 0.87151 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.26 10.60 55.54 0.59 -21.67 16 2 C 0.07 1.81 5.42 -17.34 -0.09 1.72 16 3 Si 0.91 19.69 29.56 -169.99 -5.03 14.67 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.74 9.02 -37.86 -0.34 -13.08 16 8 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.20 -5.07 9.74 -39.26 -0.38 -5.45 16 11 C -0.12 -2.63 9.90 -39.79 -0.39 -3.02 16 12 C 0.03 0.60 6.30 -83.57 -0.53 0.07 16 13 N -0.67 -11.90 5.31 -14.10 -0.07 -11.98 16 14 C 0.69 12.27 6.96 -86.93 -0.60 11.67 16 15 O -0.56 -12.35 10.92 5.29 0.06 -12.29 16 16 N -0.75 -9.42 4.98 -59.81 -0.30 -9.71 16 17 C 0.21 2.40 2.46 -69.08 -0.17 2.23 16 18 H 0.10 1.37 7.44 -51.93 -0.39 0.98 16 19 C -0.12 -1.29 4.87 -26.73 -0.13 -1.42 16 20 C -0.12 -1.67 4.18 -26.73 -0.11 -1.78 16 21 C 0.08 0.94 7.05 37.16 0.26 1.20 16 22 O -0.57 -8.17 13.66 -35.23 -0.48 -8.65 16 23 C -0.09 -0.83 4.95 -104.62 -0.52 -1.35 16 24 C -0.11 -0.95 9.05 -39.59 -0.36 -1.31 16 25 C -0.12 -0.90 10.05 -39.59 -0.40 -1.29 16 26 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.11 -0.98 9.67 -39.58 -0.38 -1.36 16 29 C -0.09 -2.36 8.61 -39.79 -0.34 -2.70 16 30 C -0.14 -3.94 8.62 -39.26 -0.34 -4.27 16 31 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.39 5.37 8.83 -40.82 -0.36 5.01 16 35 H 0.39 3.81 6.90 -40.82 -0.28 3.53 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.31 7.84 -51.93 -0.41 0.90 16 39 H 0.08 1.43 5.65 -51.93 -0.29 1.14 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.37 3.35 9.12 45.56 0.42 3.76 16 43 H 0.12 0.84 6.94 -52.48 -0.36 0.48 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.13 1.04 8.04 -52.49 -0.42 0.62 16 48 H 0.11 2.89 6.25 -52.48 -0.33 2.56 16 49 H 0.13 3.78 6.13 -52.49 -0.32 3.46 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -33.95 400.97 -11.51 -45.46 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -6.10 Total: 18.84 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -6.22 Total: -20.70 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.22 Total: -43.36 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.42 Total: -20.95 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.95 -11.51 -45.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077672574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.821 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds