Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48506 * 109.47065 * 185.01012 * 3 2 1 5 5 H 1.48494 * 109.47108 * 305.01108 * 3 2 1 6 6 H 1.48496 * 109.46958 * 65.01494 * 3 2 1 7 7 C 1.39036 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00113 * 207.41271 * 7 2 1 9 9 N 1.36893 * 119.99761 * 27.67751 * 7 2 1 10 10 C 1.34775 * 119.99709 * 47.36708 * 9 7 2 11 11 O 1.21607 * 120.00014 * 5.97267 * 10 9 7 12 12 C 1.47588 * 119.99881 * 185.97069 * 10 9 7 13 13 C 1.39708 * 120.16665 * 69.56874 * 12 10 9 14 14 C 1.37928 * 119.86144 * 179.74189 * 13 12 10 15 15 Br 1.89097 * 119.90112 * 180.25467 * 14 13 12 16 16 C 1.38556 * 120.20303 * 0.51290 * 14 13 12 17 17 C 1.38217 * 120.33637 * 359.76416 * 16 14 13 18 18 C 1.38290 * 120.13595 * 359.97438 * 17 16 14 19 19 F 1.35098 * 120.10110 * 179.97438 * 18 17 16 20 20 C 1.46496 * 120.00299 * 227.36613 * 9 7 2 21 21 C 1.54272 * 110.03295 * 63.41306 * 20 9 7 22 22 C 1.54961 * 104.16169 * 217.13655 * 21 20 9 23 23 C 1.54893 * 102.77788 * 37.89007 * 22 21 20 24 24 C 1.53883 * 110.03126 * 306.19950 * 20 9 7 25 25 H 0.96997 * 120.00368 * 4.93841 * 1 2 3 26 26 H 1.08007 * 120.07593 * 0.02562 * 13 12 10 27 27 H 1.07999 * 119.83226 * 179.74068 * 16 14 13 28 28 H 1.08006 * 119.92816 * 179.97438 * 17 16 14 29 29 H 1.08995 * 110.02056 * 184.80521 * 20 9 7 30 30 H 1.08998 * 110.48491 * 335.78806 * 21 20 9 31 31 H 1.08998 * 110.48274 * 98.42551 * 21 20 9 32 32 H 1.09000 * 110.72539 * 279.57492 * 22 21 20 33 33 H 1.09000 * 110.92460 * 156.29332 * 22 21 20 34 34 H 1.08993 * 110.48608 * 203.40510 * 23 22 21 35 35 H 1.08999 * 110.60041 * 80.81282 * 23 22 21 36 36 H 1.08998 * 110.02518 * 238.56467 * 24 20 9 37 37 H 1.08994 * 110.03025 * 359.94572 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7031 1.3491 -0.1223 5 1 1.7995 2.4481 -1.1467 6 1 1.9830 2.3421 1.2690 7 6 2.0090 -1.2040 -0.0005 8 1 2.9980 -1.2566 0.4300 9 7 1.4420 -2.3215 -0.5517 10 6 0.8629 -2.2538 -1.7668 11 8 0.9383 -1.2309 -2.4202 12 6 0.1372 -3.4211 -2.3044 13 6 -1.0744 -3.8185 -1.7334 14 6 -1.7500 -4.9070 -2.2443 15 35 -3.3935 -5.4415 -1.4769 16 6 -1.2255 -5.6134 -3.3147 17 6 -0.0246 -5.2310 -3.8823 18 6 0.6618 -4.1385 -3.3846 19 9 1.8357 -3.7657 -3.9396 20 6 1.4648 -3.5909 0.1791 21 6 0.6574 -3.4621 1.4873 22 6 1.4571 -4.3069 2.5112 23 6 2.9277 -4.0107 2.1254 24 6 2.9077 -3.9399 0.5845 25 1 -0.4850 0.8369 -0.0723 26 1 -1.4835 -3.2717 -0.8967 27 1 -1.7574 -6.4674 -3.7072 28 1 0.3784 -5.7867 -4.7161 29 1 1.0484 -4.3855 -0.4400 30 1 0.6107 -2.4208 1.8058 31 1 -0.3460 -3.8677 1.3578 32 1 1.2333 -5.3673 2.3949 33 1 1.2518 -3.9798 3.5305 34 1 3.5800 -4.8164 2.4618 35 1 3.2504 -3.0586 2.5468 36 1 3.1910 -4.9043 0.1627 37 1 3.5910 -3.1653 0.2366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = -50.174638 kcal Electronic energy + Delta-G solvation = -24334.548082 eV Core-core repulsion = 20651.475697 eV Total energy + Delta-G solvation = -3683.072385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.032 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.63202 -39.55026 -38.13251 -36.65859 -33.48856 -32.11787 -31.85361 -30.85773 -28.78919 -28.06281 -26.93389 -25.29566 -23.24469 -22.26084 -20.11815 -20.08161 -19.40238 -17.63586 -16.86020 -16.34134 -16.03455 -15.44991 -15.09084 -14.96081 -14.59389 -14.15151 -14.07465 -13.61840 -13.29506 -12.89167 -12.85674 -12.65770 -12.60108 -11.92016 -11.56706 -11.35676 -11.04523 -10.89330 -10.83545 -10.68850 -10.58163 -10.48720 -10.45867 -10.27970 -10.23635 -10.00823 -9.87581 -8.96753 -8.70973 -8.50600 -8.28305 -7.31073 -6.28632 -3.96860 0.99375 1.18919 1.62851 3.26894 3.41332 3.42450 3.44795 3.95127 4.20023 4.37383 4.67174 4.80072 4.99371 5.09500 5.23751 5.27440 5.29292 5.40099 5.56727 5.79382 5.88457 5.90686 6.07737 6.08487 6.16530 6.17196 6.22321 6.28711 6.34345 6.44397 6.46389 6.61528 6.79433 6.82200 6.94351 7.21799 7.57379 8.18255 8.90526 9.00248 9.48712 10.07399 10.78022 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.004632 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.843083 B = 6043.003343 C = 6406.579062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.084 3.916 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.286 1.286 7 C -0.342 4.342 8 H 0.082 0.918 9 N -0.427 5.427 10 C 0.519 3.481 11 O -0.538 6.538 12 C -0.115 4.115 13 C -0.034 4.034 14 C -0.106 4.106 15 Br -0.050 7.050 16 C -0.067 4.067 17 C -0.155 4.155 18 C 0.137 3.863 19 F -0.125 7.125 20 C 0.126 3.874 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.129 4.129 25 H 0.267 0.733 26 H 0.148 0.852 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 -14.464 -0.831 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.127 4.127 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.213 1.213 7 C -0.468 4.468 8 H 0.100 0.900 9 N -0.147 5.147 10 C 0.305 3.695 11 O -0.418 6.418 12 C -0.121 4.121 13 C -0.054 4.054 14 C -0.186 4.186 15 Br 0.035 6.965 16 C -0.087 4.087 17 C -0.174 4.174 18 C 0.116 3.884 19 F -0.103 7.103 20 C 0.022 3.978 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.168 4.168 25 H 0.077 0.923 26 H 0.166 0.834 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.073 -13.995 -0.814 14.908 hybrid contribution 0.738 0.944 -0.365 1.253 sum -4.334 -13.051 -1.179 13.802 Atomic orbital electron populations 1.69936 1.06843 1.28371 1.41340 1.25215 0.94515 0.99734 0.93230 0.86361 0.80649 0.82954 0.77314 1.19316 1.20551 1.21256 1.18793 0.99748 0.86626 1.41596 0.89998 1.43278 1.51578 1.07769 1.12090 1.17649 0.83385 0.86148 0.82312 1.90657 1.61443 1.31051 1.58637 1.20668 0.96883 0.98177 0.96358 1.21230 0.92317 0.93426 0.98442 1.21671 0.95212 1.00754 1.00934 1.96679 1.26001 1.90788 1.83052 1.20901 0.94782 0.99006 0.94046 1.20994 0.96238 0.97659 1.02553 1.17826 0.82910 0.94436 0.93200 1.91542 1.44235 1.90771 1.83739 1.21810 0.94739 0.87770 0.93526 1.22670 0.96978 1.02212 0.94402 1.22443 0.95682 0.99049 0.98835 1.22248 0.96329 1.00890 0.95891 1.22403 0.97990 1.00689 0.95668 0.92324 0.83417 0.84273 0.83864 0.91931 0.88711 0.93001 0.92547 0.92242 0.92881 0.91446 0.92941 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.28 12.93 55.50 0.72 -22.56 16 2 C 0.08 2.28 4.13 -17.46 -0.07 2.21 16 3 Si 0.90 21.60 29.64 -169.99 -5.04 16.56 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.34 -8.94 7.36 -15.00 -0.11 -9.05 16 8 H 0.08 2.10 6.93 -52.49 -0.36 1.73 16 9 N -0.43 -10.30 2.43 -107.69 -0.26 -10.56 16 10 C 0.52 13.12 6.05 -12.45 -0.08 13.04 16 11 O -0.54 -15.98 15.82 5.27 0.08 -15.90 16 12 C -0.12 -2.36 3.96 -104.92 -0.42 -2.77 16 13 C -0.03 -0.61 8.63 -39.15 -0.34 -0.94 16 14 C -0.11 -1.55 6.22 -39.58 -0.25 -1.80 16 15 Br -0.05 -0.64 33.69 -68.01 -2.29 -2.93 16 16 C -0.07 -0.85 9.77 -39.47 -0.39 -1.23 16 17 C -0.15 -2.10 10.01 -39.57 -0.40 -2.50 16 18 C 0.14 2.47 7.29 -38.95 -0.28 2.19 16 19 F -0.12 -2.44 16.83 2.25 0.04 -2.40 16 20 C 0.13 2.47 2.96 -66.81 -0.20 2.27 16 21 C -0.12 -2.29 6.43 -25.03 -0.16 -2.45 16 22 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 23 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 24 C -0.13 -2.26 6.21 -25.61 -0.16 -2.41 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 26 H 0.15 2.83 8.06 -52.48 -0.42 2.41 16 27 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 29 H 0.06 1.17 5.88 -51.93 -0.31 0.86 16 30 H 0.09 2.08 7.26 -51.93 -0.38 1.71 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.51 6.57 -51.93 -0.34 1.17 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -30.38 333.39 -9.24 -39.62 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.33 Total: 0.55 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.18 Total: -7.41 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.46 Total: -33.12 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.08 Total: -15.90 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.04 Total: 16.56 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.38 -9.24 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.556 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds