Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86804 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47261 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47266 * 299.99892 * 3 2 1 6 6 H 1.48503 * 109.47273 * 60.00021 * 3 2 1 7 7 C 1.39037 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00309 * 200.36058 * 7 2 1 9 9 N 1.36872 * 120.00153 * 20.36407 * 7 2 1 10 10 C 1.34784 * 119.99909 * 47.14667 * 9 7 2 11 11 O 1.21592 * 119.99528 * 6.28659 * 10 9 7 12 12 C 1.47686 * 119.99941 * 186.28892 * 10 9 7 13 13 C 1.39686 * 120.12901 * 61.26281 * 12 10 9 14 14 C 1.37888 * 119.90207 * 179.71712 * 13 12 10 15 15 C 1.38469 * 120.17362 * 0.53712 * 14 13 12 16 16 Br 1.89097 * 119.87112 * 179.74013 * 15 14 13 17 17 C 1.38684 * 120.25768 * 359.76172 * 15 14 13 18 18 F 1.35093 * 119.95088 * 179.97438 * 17 15 14 19 19 C 1.38129 * 120.09100 * 359.95356 * 17 15 14 20 20 C 1.46505 * 120.00495 * 227.14697 * 9 7 2 21 21 C 1.54961 * 110.92029 * 312.66669 * 20 9 7 22 22 C 1.54261 * 104.16168 * 156.29462 * 21 20 9 23 23 C 1.53878 * 106.63933 * 336.44199 * 22 21 20 24 24 C 1.54265 * 106.59692 * 359.97438 * 23 22 21 25 25 H 0.97001 * 120.00238 * 4.95425 * 1 2 3 26 26 H 1.07993 * 120.04771 * 359.97438 * 13 12 10 27 27 H 1.08004 * 119.91193 * 180.27216 * 14 13 12 28 28 H 1.08004 * 120.08625 * 180.02562 * 19 17 15 29 29 H 1.08998 * 110.67548 * 189.35473 * 20 9 7 30 30 H 1.09005 * 110.47929 * 37.63753 * 21 20 9 31 31 H 1.09002 * 110.52775 * 274.97330 * 21 20 9 32 32 H 1.09001 * 110.03707 * 217.13466 * 22 21 20 33 33 H 1.08998 * 110.03563 * 95.74636 * 22 21 20 34 34 H 1.09001 * 110.03376 * 119.26151 * 23 22 21 35 35 H 1.08998 * 110.03544 * 240.64377 * 23 22 21 36 36 H 1.09002 * 110.49154 * 142.28953 * 24 23 22 37 37 H 1.09003 * 110.48552 * 264.80109 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8889 2.3965 -1.2125 6 1 1.8889 2.3965 1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0383 -1.2332 0.3260 9 7 1.3887 -2.3526 -0.4114 10 6 0.6752 -2.3603 -1.5549 11 8 0.6757 -1.3830 -2.2783 12 6 -0.1071 -3.5557 -1.9291 13 6 -1.1393 -4.0052 -1.1022 14 6 -1.8706 -5.1184 -1.4590 15 6 -1.5771 -5.7983 -2.6291 16 35 -2.5807 -7.3282 -3.1064 17 6 -0.5498 -5.3617 -3.4520 18 9 -0.2684 -6.0300 -4.5919 19 6 0.1859 -4.2444 -3.1080 20 6 1.5005 -3.5736 0.3904 21 6 2.9719 -3.8329 0.8016 22 6 2.8615 -4.7089 2.0665 23 6 1.4740 -4.4348 2.6726 24 6 0.7889 -3.4009 1.7553 25 1 -0.4850 0.8369 -0.0725 26 1 -1.3670 -3.4792 -0.1869 27 1 -2.6716 -5.4635 -0.8220 28 1 0.9857 -3.9043 -3.7492 29 1 1.0950 -4.4282 -0.1512 30 1 3.4750 -2.8935 1.0307 31 1 3.5007 -4.3674 0.0124 32 1 3.6405 -4.4363 2.7786 33 1 2.9512 -5.7621 1.8004 34 1 0.8900 -5.3548 2.6999 35 1 1.5795 -4.0300 3.6791 36 1 -0.2748 -3.6198 1.6613 37 1 0.9371 -2.3919 2.1402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -50.335785 kcal Electronic energy + Delta-G solvation = -23934.751960 eV Core-core repulsion = 20251.672587 eV Total energy + Delta-G solvation = -3683.079373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.032 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.87025 -39.65212 -38.01402 -36.71299 -33.62183 -32.44487 -31.54776 -30.59246 -29.24878 -28.13952 -26.94224 -25.26736 -22.96644 -22.61381 -20.30280 -19.87078 -19.60730 -17.79844 -16.38191 -16.27832 -15.95404 -15.72878 -15.61372 -15.16714 -14.73987 -14.16887 -13.97998 -13.55390 -13.41571 -12.85872 -12.78947 -12.71255 -12.46301 -11.85530 -11.75324 -11.52583 -11.13377 -11.02096 -10.91588 -10.82240 -10.77781 -10.56657 -10.51315 -10.32864 -10.24572 -9.91982 -9.85202 -8.89046 -8.81173 -8.59818 -8.30676 -7.31068 -6.29496 -4.03568 0.92944 1.25369 1.52068 3.22904 3.35111 3.36135 3.44991 3.98480 4.09518 4.28208 4.62723 4.85259 5.02786 5.14411 5.18499 5.24015 5.32116 5.40545 5.52036 5.70046 5.82344 5.92806 5.98307 6.06200 6.07525 6.14661 6.19108 6.21084 6.35240 6.38576 6.51355 6.58139 6.78929 6.82801 6.85397 7.08694 7.52499 8.13067 8.87461 8.96250 9.44330 10.03844 10.78071 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.003753 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.358420 B = 7458.814343 C = 8433.414164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.429 5.429 10 C 0.515 3.485 11 O -0.535 6.535 12 C -0.039 4.039 13 C -0.097 4.097 14 C -0.067 4.067 15 C -0.135 4.135 16 Br -0.044 7.044 17 C 0.122 3.878 18 F -0.129 7.129 19 C -0.123 4.123 20 C 0.125 3.875 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.267 0.733 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -14.273 0.336 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.212 1.212 7 C -0.464 4.464 8 H 0.101 0.899 9 N -0.149 5.149 10 C 0.302 3.698 11 O -0.414 6.414 12 C -0.043 4.043 13 C -0.117 4.117 14 C -0.087 4.087 15 C -0.215 4.215 16 Br 0.041 6.959 17 C 0.101 3.899 18 F -0.107 7.107 19 C -0.143 4.143 20 C 0.020 3.980 21 C -0.168 4.168 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.162 4.162 25 H 0.077 0.923 26 H 0.163 0.837 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.675 -14.233 -0.179 14.701 hybrid contribution 0.430 0.978 -0.103 1.073 sum -3.245 -13.255 -0.283 13.650 Atomic orbital electron populations 1.69831 1.06642 1.28223 1.42180 1.25274 0.94759 0.99674 0.93698 0.86249 0.80174 0.82713 0.77558 1.19354 1.20510 1.21156 1.18923 0.95618 0.84638 1.47203 0.89884 1.43119 1.46551 1.08660 1.16537 1.17796 0.83712 0.86006 0.82325 1.90660 1.64348 1.34816 1.51594 1.20606 0.95663 0.95146 0.92915 1.21518 0.94608 0.95339 1.00237 1.20925 0.99254 0.94520 0.94019 1.21870 1.00598 0.98829 1.00240 1.96672 1.71071 1.35212 1.92979 1.17176 0.96032 0.92968 0.83770 1.91524 1.92753 1.79215 1.47209 1.21144 1.01129 0.93957 0.98078 1.22165 0.94948 0.88694 0.92156 1.22617 0.97522 1.00362 0.96307 1.22051 0.97215 0.99113 0.97413 1.22083 0.96043 0.98878 0.99040 1.22618 0.98162 1.00297 0.95148 0.92273 0.83695 0.84106 0.83640 0.91078 0.89860 0.92596 0.92345 0.92635 0.92677 0.92384 0.92723 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.93 12.38 55.50 0.69 -22.24 16 2 C 0.08 2.01 4.35 -17.46 -0.08 1.94 16 3 Si 0.91 20.83 29.60 -169.99 -5.03 15.80 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.34 -8.50 7.72 -15.01 -0.12 -8.61 16 8 H 0.08 2.03 6.43 -52.49 -0.34 1.70 16 9 N -0.43 -9.84 2.53 -106.69 -0.27 -10.11 16 10 C 0.51 12.36 6.28 -12.40 -0.08 12.28 16 11 O -0.54 -15.19 15.59 5.28 0.08 -15.11 16 12 C -0.04 -0.75 4.26 -104.97 -0.45 -1.20 16 13 C -0.10 -1.63 8.33 -39.17 -0.33 -1.95 16 14 C -0.07 -0.95 9.76 -39.62 -0.39 -1.33 16 15 C -0.13 -1.97 6.24 -39.33 -0.25 -2.21 16 16 Br -0.04 -0.56 33.26 -68.01 -2.26 -2.82 16 17 C 0.12 1.94 7.26 -39.46 -0.29 1.65 16 18 F -0.13 -2.00 16.71 2.25 0.04 -1.96 16 19 C -0.12 -2.14 9.77 -39.10 -0.38 -2.52 16 20 C 0.13 2.30 2.66 -65.89 -0.18 2.13 16 21 C -0.13 -2.14 6.30 -25.04 -0.16 -2.30 16 22 C -0.12 -1.62 6.80 -25.61 -0.17 -1.80 16 23 C -0.12 -1.69 6.80 -25.61 -0.17 -1.86 16 24 C -0.12 -2.13 6.42 -25.07 -0.16 -2.29 16 25 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.15 2.48 7.12 -52.49 -0.37 2.10 16 27 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 28 H 0.15 2.47 8.06 -52.48 -0.42 2.05 16 29 H 0.07 1.24 5.86 -51.93 -0.30 0.93 16 30 H 0.08 1.51 6.14 -51.93 -0.32 1.19 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.90 7.21 -51.93 -0.37 0.53 16 37 H 0.09 1.74 7.53 -51.93 -0.39 1.35 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -28.89 329.76 -9.17 -38.05 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.19 Total: 1.51 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.19 Total: -8.09 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.42 Total: -32.35 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.26 Total: -2.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.89 -9.17 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.282 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds