Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00093 * 2 1 4 4 H 1.48503 * 109.46933 * 269.99876 * 3 2 1 5 5 H 1.48501 * 109.46948 * 29.99572 * 3 2 1 6 6 H 1.48498 * 109.47234 * 149.99817 * 3 2 1 7 7 C 1.37878 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00063 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.76198 * 103.00273 * 179.97438 * 10 9 7 12 12 C 1.38781 * 120.10413 * 0.02562 * 11 10 9 13 13 C 1.38199 * 119.98980 * 179.97438 * 12 11 10 14 14 C 1.38297 * 120.20087 * 0.02562 * 13 12 11 15 15 C 1.38249 * 120.20612 * 359.68406 * 14 13 12 16 16 C 1.38650 * 120.01209 * 0.58819 * 15 14 13 17 17 N 1.40138 * 120.10059 * 179.69920 * 16 15 14 18 18 C 1.34774 * 120.00303 * 335.19069 * 17 16 15 19 19 O 1.21296 * 120.00042 * 354.46970 * 18 17 16 20 20 C 1.50699 * 120.00017 * 174.47301 * 18 17 16 21 21 H 1.08994 * 110.04994 * 301.40389 * 20 18 17 22 22 C 1.53879 * 110.02633 * 179.97438 * 20 18 17 23 23 C 1.54160 * 108.70367 * 193.52682 * 22 20 18 24 24 S 1.82927 * 105.08720 * 27.91105 * 23 22 20 25 25 O 1.42094 * 109.35465 * 111.27382 * 24 23 22 26 26 O 1.42095 * 109.35036 * 244.34638 * 24 23 22 27 27 C 1.55405 * 110.04641 * 62.65297 * 20 18 17 28 28 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47169 * 59.99626 * 9 7 2 30 30 H 1.09000 * 109.47087 * 300.00136 * 9 7 2 31 31 H 1.08005 * 120.00676 * 0.02562 * 12 11 10 32 32 H 1.08003 * 119.89660 * 179.97438 * 13 12 11 33 33 H 1.07998 * 119.89473 * 179.97438 * 14 13 12 34 34 H 1.08002 * 119.99143 * 180.29816 * 15 14 13 35 35 H 0.97003 * 119.99474 * 155.18853 * 17 16 15 36 36 H 1.08995 * 109.64711 * 73.67487 * 22 20 18 37 37 H 1.09009 * 109.53519 * 313.31041 * 22 20 18 38 38 H 1.08992 * 110.32228 * 269.00334 * 23 22 20 39 39 H 1.09008 * 110.32087 * 146.80625 * 23 22 20 40 40 H 1.09005 * 110.75932 * 43.44401 * 27 20 18 41 41 H 1.08997 * 110.95375 * 279.89186 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0005 11 6 1.3824 -5.2948 0.0013 12 6 0.0032 -5.1410 0.0012 13 6 -0.8161 -6.2539 0.0013 14 6 -0.2659 -7.5228 0.0020 15 6 1.1070 -7.6856 -0.0040 16 6 1.9371 -6.5750 0.0017 17 7 3.3290 -6.7380 0.0020 18 6 3.8748 -7.8707 0.4871 19 8 3.1706 -8.7058 1.0145 20 6 5.3600 -8.0999 0.3744 21 1 5.6637 -8.0743 -0.6721 22 6 5.7328 -9.4559 0.9989 23 6 7.2628 -9.5134 1.1788 24 16 7.7839 -7.7718 1.3829 25 8 8.2316 -7.5673 2.7159 26 8 8.6144 -7.3979 0.2921 27 6 6.1290 -7.0124 1.1750 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 -0.4299 -4.1515 0.0002 32 1 -1.8892 -6.1324 0.0016 33 1 -0.9107 -8.3891 0.0024 34 1 1.5329 -8.6780 -0.0083 35 1 3.8995 -6.0354 -0.3469 36 1 5.4106 -10.2632 0.3412 37 1 5.2457 -9.5568 1.9688 38 1 7.7317 -9.9478 0.2960 39 1 7.5181 -10.0913 2.0671 40 1 5.6581 -6.8397 2.1428 41 1 6.1978 -6.0852 0.6061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = -83.093051 kcal Electronic energy + Delta-G solvation = -26169.171296 eV Core-core repulsion = 22267.356030 eV Total energy + Delta-G solvation = -3901.815266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 355.074 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82974 -38.54149 -37.40784 -36.48266 -36.14078 -34.91196 -33.33483 -30.96207 -30.85396 -29.21403 -28.67918 -26.31449 -23.93457 -23.18739 -22.79792 -21.62002 -20.22826 -19.23367 -18.33015 -17.59247 -17.26386 -16.77167 -16.44213 -16.34334 -16.05616 -15.42038 -15.12911 -14.97464 -14.58247 -14.54848 -14.27500 -14.01013 -13.54275 -13.14252 -13.08871 -12.92670 -12.67731 -12.54664 -12.44995 -12.44568 -12.36665 -12.29899 -11.91431 -11.60036 -11.41571 -11.22525 -11.00248 -10.83931 -10.80896 -10.55607 -10.17067 -9.83944 -9.77218 -9.33350 -9.26614 -8.71332 -8.13579 -6.71449 -6.34564 -4.40946 -0.40053 1.33547 1.57534 2.05294 2.25214 2.37437 2.79701 3.17500 3.18215 3.24091 3.27747 3.47805 3.57481 3.85893 3.93586 3.99208 4.10958 4.23048 4.30427 4.38247 4.56429 4.89270 5.03312 5.07759 5.15450 5.20065 5.24658 5.35420 5.47118 5.50972 5.65835 5.70595 6.08113 6.32495 6.43149 6.58202 6.75476 6.85199 6.88526 7.15791 7.26551 7.57658 7.79975 7.85420 8.59938 9.23796 10.76484 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.003000 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.113894 B = 9330.444891 C =11989.580213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.069 0.931 9 C 0.079 3.921 10 S -0.172 6.172 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.117 4.117 16 C 0.145 3.855 17 N -0.654 5.654 18 C 0.530 3.470 19 O -0.516 6.516 20 C -0.111 4.111 21 H 0.126 0.874 22 C -0.096 4.096 23 C -0.592 4.592 24 S 2.396 3.604 25 O -0.933 6.933 26 O -0.931 6.931 27 C -0.592 4.592 28 H 0.268 0.732 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.416 0.584 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -19.710 -0.388 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.067 4.067 10 S 0.074 5.926 11 C -0.209 4.209 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.144 4.144 15 C -0.138 4.138 16 C 0.045 3.955 17 N -0.298 5.298 18 C 0.315 3.685 19 O -0.392 6.392 20 C -0.133 4.133 21 H 0.144 0.856 22 C -0.135 4.135 23 C -0.721 4.721 24 S 2.578 3.422 25 O -0.930 6.930 26 O -0.929 6.929 27 C -0.720 4.720 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.253 0.747 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.056 -19.593 0.157 22.024 hybrid contribution -1.626 0.976 -0.362 1.931 sum 8.429 -18.618 -0.205 20.438 Atomic orbital electron populations 1.69935 1.06170 1.27695 1.48740 1.24948 0.95005 0.99358 0.94263 0.86315 0.79740 0.81956 0.78465 1.20217 1.20840 1.19460 1.20596 0.93458 0.88478 1.53564 0.91327 1.21373 0.94037 0.90361 1.00958 1.84987 1.18559 0.98368 1.90643 1.21820 0.97527 0.96030 1.05568 1.21249 0.91534 1.00130 1.00974 1.21062 0.99607 0.92276 1.00646 1.20950 0.94377 0.97089 1.01960 1.21185 0.93108 0.98201 1.01347 1.17199 0.82033 0.92345 1.03938 1.43470 1.06035 1.19609 1.60647 1.20003 0.89159 0.81581 0.77718 1.90692 1.62370 1.44216 1.41918 1.22094 0.93766 0.94600 1.02863 0.85629 1.21733 0.90982 0.96027 1.04767 1.30530 1.05432 1.23818 1.12330 1.08979 0.77981 0.79782 0.75447 1.93635 1.79061 1.84159 1.36174 1.93643 1.63259 1.81182 1.54770 1.30894 1.21854 1.08789 1.10484 0.92233 0.93689 0.93659 0.84628 0.86022 0.86058 0.83932 0.74684 0.88090 0.88257 0.84222 0.83917 0.83400 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.52 -13.76 9.13 -34.44 -0.31 -14.07 16 8 H 0.07 1.79 7.71 -52.48 -0.40 1.38 16 9 C 0.08 1.91 4.09 36.00 0.15 2.06 16 10 S -0.17 -3.38 20.55 -107.50 -2.21 -5.59 16 11 C -0.09 -1.68 6.12 -38.90 -0.24 -1.92 16 12 C -0.11 -2.00 9.36 -39.39 -0.37 -2.36 16 13 C -0.12 -1.70 10.04 -39.57 -0.40 -2.09 16 14 C -0.12 -1.67 10.04 -39.56 -0.40 -2.07 16 15 C -0.12 -1.73 8.72 -39.43 -0.34 -2.07 16 16 C 0.15 2.29 6.44 -83.43 -0.54 1.75 16 17 N -0.65 -8.39 5.14 -9.71 -0.05 -8.44 16 18 C 0.53 5.91 6.95 -10.99 -0.08 5.83 16 19 O -0.52 -7.05 12.98 5.54 0.07 -6.97 16 20 C -0.11 -0.76 2.97 -90.04 -0.27 -1.03 16 21 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 22 C -0.10 -0.53 5.25 -25.67 -0.13 -0.67 16 23 C -0.59 -2.44 7.26 37.76 0.27 -2.17 16 24 S 2.40 17.05 6.09 -107.50 -0.66 16.39 16 25 O -0.93 -10.37 18.14 -57.73 -1.05 -11.42 16 26 O -0.93 -9.75 18.15 -57.73 -1.05 -10.80 16 27 C -0.59 -3.92 6.59 38.43 0.25 -3.67 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.04 1.13 7.75 -51.92 -0.40 0.73 16 30 H 0.05 1.15 7.75 -51.92 -0.40 0.75 16 31 H 0.14 2.54 5.88 -52.48 -0.31 2.23 16 32 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.14 2.02 5.79 -52.49 -0.30 1.71 16 35 H 0.42 4.83 7.58 -40.82 -0.31 4.52 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.62 7.68 -51.92 -0.40 0.22 16 38 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.15 0.99 8.10 -51.93 -0.42 0.56 16 41 H 0.15 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -35.21 366.99 -11.23 -46.44 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.04 Total: 4.06 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.50 Total: -20.74 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.69 Total: -32.28 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -2.02 Total: -29.19 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 13.66 SS G_CDS: -2.86 Total: 10.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.21 -11.23 -46.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.653 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds