Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48505 * 109.46909 * 269.99870 * 3 2 1 5 5 H 1.48494 * 109.47128 * 29.99808 * 3 2 1 6 6 H 1.48497 * 109.46882 * 149.99911 * 3 2 1 7 7 C 1.37879 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.76200 * 103.00075 * 179.97438 * 10 9 7 12 12 C 1.38793 * 120.10518 * 0.25636 * 11 10 9 13 13 C 1.38194 * 119.98825 * 180.27848 * 12 11 10 14 14 C 1.38297 * 120.19914 * 359.71594 * 13 12 11 15 15 C 1.38254 * 120.21292 * 0.02881 * 14 13 12 16 16 C 1.38651 * 120.00437 * 359.97391 * 15 14 13 17 17 N 1.40148 * 120.09489 * 180.02562 * 16 15 14 18 18 C 1.34774 * 119.99909 * 34.67438 * 17 16 15 19 19 O 1.21299 * 120.00077 * 355.51781 * 18 17 16 20 20 C 1.50701 * 119.99919 * 175.51914 * 18 17 16 21 21 H 1.09000 * 109.53339 * 59.63370 * 20 18 17 22 22 C 1.53877 * 109.64701 * 179.97438 * 20 18 17 23 23 C 1.55051 * 106.66224 * 167.01032 * 22 20 18 24 24 S 1.83324 * 102.54853 * 317.62063 * 23 22 20 25 25 O 1.42101 * 109.31836 * 269.76113 * 24 23 22 26 26 O 1.42103 * 109.37863 * 136.57230 * 24 23 22 27 27 C 1.54164 * 109.64554 * 299.27483 * 20 18 17 28 28 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47470 * 59.99716 * 9 7 2 30 30 H 1.09004 * 109.47535 * 299.99846 * 9 7 2 31 31 H 1.07997 * 120.00519 * 359.97073 * 12 11 10 32 32 H 1.07997 * 119.90528 * 179.74692 * 13 12 11 33 33 H 1.08005 * 119.89502 * 180.02562 * 14 13 12 34 34 H 1.07997 * 119.99437 * 180.02562 * 15 14 13 35 35 H 0.97000 * 119.99548 * 214.67177 * 17 16 15 36 36 H 1.08999 * 110.02417 * 286.32487 * 22 20 18 37 37 H 1.08996 * 110.02259 * 47.69435 * 22 20 18 38 38 H 1.08994 * 110.78918 * 75.85930 * 23 22 20 39 39 H 1.09001 * 110.78646 * 199.32142 * 23 22 20 40 40 H 1.09003 * 110.31766 * 331.14027 * 27 20 18 41 41 H 1.09005 * 110.31964 * 93.33397 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0021 11 6 1.3824 -5.2949 0.0027 12 6 0.0030 -5.1410 -0.0034 13 6 -0.8162 -6.2539 0.0029 14 6 -0.2660 -7.5227 0.0093 15 6 1.1069 -7.6856 0.0101 16 6 1.9369 -6.5750 0.0038 17 7 3.3289 -6.7380 0.0041 18 6 3.8863 -7.7732 -0.6547 19 8 3.1807 -8.6089 -1.1792 20 6 5.3861 -7.8926 -0.7398 21 1 5.8040 -7.9586 0.2648 22 6 5.7604 -9.1530 -1.5392 23 6 7.2706 -9.0371 -1.8707 24 16 7.4390 -7.2759 -2.3509 25 8 7.2325 -7.1486 -3.7510 26 8 8.6093 -6.7342 -1.7539 27 6 5.9641 -6.6590 -1.4615 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 -0.4300 -4.1516 -0.0081 32 1 -1.8894 -6.1325 0.0023 33 1 -0.9109 -8.3891 0.0138 34 1 1.5328 -8.6780 0.0147 35 1 3.8911 -6.1057 0.4784 36 1 5.5772 -10.0439 -0.9386 37 1 5.1785 -9.1975 -2.4598 38 1 7.8774 -9.2581 -0.9926 39 1 7.5359 -9.6921 -2.7005 40 1 5.2367 -6.2581 -2.1674 41 1 6.2500 -5.8961 -0.7372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -84.445026 kcal Electronic energy + Delta-G solvation = -26284.512582 eV Core-core repulsion = 22382.638690 eV Total energy + Delta-G solvation = -3901.873892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 355.074 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78089 -38.55095 -37.35546 -36.43005 -36.09957 -34.87756 -33.33146 -30.93246 -30.85369 -29.19489 -28.67532 -26.27956 -23.89689 -23.16869 -22.75636 -21.58865 -20.24056 -19.18470 -18.25995 -17.54957 -17.25274 -16.79911 -16.51368 -16.32767 -15.97442 -15.45103 -15.13476 -14.89086 -14.58879 -14.47520 -14.28058 -13.86902 -13.51830 -13.11633 -13.06488 -12.86190 -12.68855 -12.53971 -12.44486 -12.42433 -12.32381 -12.26255 -11.89141 -11.67266 -11.35922 -11.18941 -11.00380 -10.82944 -10.74823 -10.45339 -10.13924 -9.86412 -9.76984 -9.33260 -9.25319 -8.71095 -8.19420 -6.72442 -6.34354 -4.40738 -0.34739 1.35973 1.57747 2.08636 2.26204 2.38442 2.83645 3.17819 3.22983 3.24318 3.27659 3.48905 3.65365 3.89318 3.94280 4.00472 4.14725 4.23204 4.30970 4.43246 4.61816 4.98933 5.03523 5.05209 5.16423 5.21496 5.24433 5.39386 5.46956 5.52581 5.67535 5.71257 6.08358 6.35869 6.42042 6.58735 6.74699 6.85344 6.88781 7.14886 7.27052 7.57798 7.80244 7.89797 8.60146 9.24013 10.76699 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.003194 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.436869 B = 8763.162000 C =11474.583280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.077 3.923 10 S -0.167 6.167 11 C -0.089 4.089 12 C -0.118 4.118 13 C -0.111 4.111 14 C -0.126 4.126 15 C -0.106 4.106 16 C 0.140 3.860 17 N -0.656 5.656 18 C 0.525 3.475 19 O -0.518 6.518 20 C -0.101 4.101 21 H 0.123 0.877 22 C -0.102 4.102 23 C -0.588 4.588 24 S 2.395 3.605 25 O -0.930 6.930 26 O -0.934 6.934 27 C -0.596 4.596 28 H 0.268 0.732 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.414 0.586 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 -19.239 0.702 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.069 4.069 10 S 0.079 5.921 11 C -0.205 4.205 12 C -0.142 4.142 13 C -0.131 4.131 14 C -0.147 4.147 15 C -0.127 4.127 16 C 0.040 3.960 17 N -0.301 5.301 18 C 0.311 3.689 19 O -0.394 6.394 20 C -0.124 4.124 21 H 0.141 0.859 22 C -0.141 4.141 23 C -0.717 4.717 24 S 2.577 3.423 25 O -0.927 6.927 26 O -0.932 6.932 27 C -0.725 4.725 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.252 0.748 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.346 -19.028 -0.251 21.660 hybrid contribution -1.462 0.904 0.775 1.885 sum 8.884 -18.124 0.524 20.191 Atomic orbital electron populations 1.69938 1.06170 1.27687 1.48742 1.24950 0.95005 0.99359 0.94263 0.86317 0.79710 0.81960 0.78499 1.20205 1.20845 1.19471 1.20591 0.93441 0.88481 1.53562 0.91342 1.21380 0.94125 0.90483 1.00943 1.85034 1.18400 0.98197 1.90449 1.21918 0.97508 0.96216 1.04822 1.21261 0.91583 1.00138 1.01244 1.21068 0.99622 0.92262 1.00193 1.20951 0.94393 0.97115 1.02290 1.21077 0.93088 0.97953 1.00617 1.17152 0.82128 0.92115 1.04627 1.43411 1.05995 1.28977 1.51714 1.20186 0.89653 0.81207 0.77834 1.90719 1.63074 1.40023 1.45563 1.21722 0.94000 0.93687 1.02949 0.85942 1.22061 0.91253 0.97850 1.02938 1.30662 1.04210 1.24117 1.12731 1.09012 0.77217 0.79634 0.76423 1.93649 1.86154 1.85081 1.27816 1.93632 1.44037 1.76611 1.78876 1.30692 1.20787 1.06519 1.14490 0.92238 0.93690 0.93707 0.84629 0.85998 0.86054 0.84494 0.74829 0.87660 0.88073 0.84219 0.83998 0.83437 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 20.43 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.52 -13.76 9.13 -34.44 -0.31 -14.07 16 8 H 0.07 1.78 7.71 -52.49 -0.40 1.38 16 9 C 0.08 1.86 4.09 36.00 0.15 2.01 16 10 S -0.17 -3.29 20.72 -107.50 -2.23 -5.51 16 11 C -0.09 -1.59 6.12 -38.90 -0.24 -1.83 16 12 C -0.12 -2.05 9.36 -39.39 -0.37 -2.42 16 13 C -0.11 -1.63 10.04 -39.58 -0.40 -2.03 16 14 C -0.13 -1.72 10.04 -39.55 -0.40 -2.12 16 15 C -0.11 -1.56 8.70 -39.42 -0.34 -1.90 16 16 C 0.14 2.19 6.32 -83.43 -0.53 1.66 16 17 N -0.66 -8.31 4.93 -9.70 -0.05 -8.36 16 18 C 0.53 5.93 6.85 -10.99 -0.08 5.86 16 19 O -0.52 -7.25 13.22 5.54 0.07 -7.18 16 20 C -0.10 -0.70 2.94 -90.71 -0.27 -0.96 16 21 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 22 C -0.10 -0.60 5.27 -25.19 -0.13 -0.74 16 23 C -0.59 -2.58 7.31 38.24 0.28 -2.30 16 24 S 2.39 18.56 6.11 -107.50 -0.66 17.91 16 25 O -0.93 -11.14 18.15 -57.71 -1.05 -12.19 16 26 O -0.93 -10.31 18.15 -57.71 -1.05 -11.35 16 27 C -0.60 -4.26 6.66 37.77 0.25 -4.01 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.04 1.14 7.74 -51.92 -0.40 0.74 16 30 H 0.04 1.13 7.76 -51.92 -0.40 0.72 16 31 H 0.14 2.54 5.88 -52.49 -0.31 2.23 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.14 1.93 6.20 -52.49 -0.33 1.60 16 35 H 0.41 4.61 7.95 -40.82 -0.32 4.29 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.72 7.72 -51.93 -0.40 0.31 16 38 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.15 1.23 7.88 -51.93 -0.41 0.82 16 41 H 0.15 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -35.46 367.67 -11.25 -46.71 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.07 Total: 4.01 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.48 Total: -21.10 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.69 Total: -32.22 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.02 Total: -30.72 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 15.28 SS G_CDS: -2.88 Total: 12.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.46 -11.25 -46.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.736 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds