Wall clock time and date at job start Tue Mar 31 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00197 * 2 1 4 4 H 1.48499 * 109.47052 * 270.00492 * 3 2 1 5 5 H 1.48502 * 109.46705 * 29.99965 * 3 2 1 6 6 H 1.48495 * 109.47344 * 150.00266 * 3 2 1 7 7 C 1.37878 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00174 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00104 * 179.97438 * 7 2 1 10 10 N 1.46491 * 109.47175 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00370 * 84.75666 * 10 9 7 12 12 C 1.50708 * 109.46802 * 270.00218 * 11 10 9 13 13 C 1.38224 * 119.62090 * 94.97404 * 12 11 10 14 14 C 1.38628 * 119.15813 * 179.78992 * 13 12 11 15 15 C 1.38666 * 118.42157 * 0.47300 * 14 13 12 16 16 C 1.38180 * 119.16501 * 359.50534 * 15 14 13 17 17 N 1.31849 * 119.61208 * 274.99511 * 12 11 10 18 18 C 1.34777 * 120.00026 * 264.75067 * 10 9 7 19 19 O 1.21589 * 120.00183 * 175.21975 * 18 10 9 20 20 C 1.47546 * 120.00119 * 355.21922 * 18 10 9 21 21 C 1.39767 * 120.13810 * 52.49101 * 20 18 10 22 22 C 1.37749 * 119.94991 * 180.02562 * 21 20 18 23 23 C 1.38489 * 120.32905 * 0.03833 * 22 21 20 24 24 C 1.38587 * 120.41074 * 0.02562 * 23 22 21 25 25 C 1.38993 * 119.90893 * 359.63478 * 24 23 22 26 26 O 1.35812 * 120.87183 * 180.02562 * 25 24 23 27 27 C 1.43190 * 116.78888 * 343.17313 * 26 25 24 28 28 C 1.53462 * 108.23080 * 46.00124 * 27 26 25 29 29 O 1.36139 * 119.36741 * 179.77913 * 24 23 22 30 30 H 0.96992 * 119.99819 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47091 * 59.99528 * 9 7 2 32 32 H 1.08998 * 109.47194 * 299.99959 * 9 7 2 33 33 H 1.08996 * 109.47892 * 149.99552 * 11 10 9 34 34 H 1.09007 * 109.46772 * 29.99016 * 11 10 9 35 35 H 1.08001 * 120.42055 * 359.97438 * 13 12 11 36 36 H 1.08001 * 120.78970 * 180.23305 * 14 13 12 37 37 H 1.07999 * 120.42173 * 179.78162 * 15 14 13 38 38 H 1.08001 * 119.61926 * 180.25196 * 16 15 14 39 39 H 1.07997 * 120.02686 * 359.97438 * 21 20 18 40 40 H 1.08000 * 119.83335 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.78994 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.70955 * 286.31668 * 27 26 25 43 43 H 1.08998 * 109.71031 * 165.68948 * 27 26 25 44 44 H 1.09005 * 109.70667 * 180.63724 * 28 27 26 45 45 H 1.08996 * 109.74684 * 60.02920 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.1343 -3.3048 -1.2643 12 6 2.8463 -4.0266 -1.5669 13 6 1.9068 -3.4321 -2.3882 14 6 0.7273 -4.1064 -2.6638 15 6 0.5318 -5.3547 -2.0925 16 6 1.5166 -5.8859 -1.2816 17 7 2.6287 -5.2176 -1.0449 18 6 4.3256 -3.1747 1.1613 19 8 4.6477 -4.3472 1.1713 20 6 4.2915 -2.4083 2.4216 21 6 3.1434 -1.6957 2.7788 22 6 3.1160 -0.9811 3.9561 23 6 4.2219 -0.9637 4.7895 24 6 5.3682 -1.6640 4.4488 25 6 5.4081 -2.3954 3.2675 26 8 6.5210 -3.0893 2.9147 27 6 7.7366 -2.7456 3.5890 28 6 7.4393 -2.6405 5.0909 29 8 6.4446 -1.6286 5.2815 30 1 -0.4849 0.8400 0.0004 31 1 3.8753 -0.6804 0.8888 32 1 3.8746 -0.6801 -0.8911 33 1 4.9454 -4.0282 -1.1817 34 1 4.3544 -2.6022 -2.0680 35 1 2.0905 -2.4560 -2.8122 36 1 -0.0232 -3.6683 -3.3050 37 1 -0.3767 -5.9069 -2.2825 38 1 1.3737 -6.8593 -0.8361 39 1 2.2787 -1.7047 2.1318 40 1 2.2277 -0.4314 4.2304 41 1 4.1907 -0.4008 5.7107 42 1 8.1043 -1.7885 3.2191 43 1 8.4846 -3.5193 3.4155 44 1 8.3482 -2.3681 5.6274 45 1 7.0667 -3.5959 5.4603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078727108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:45 Heat of formation + Delta-G solvation = -25.028874 kcal Electronic energy + Delta-G solvation = -32305.941804 eV Core-core repulsion = 28061.999323 eV Total energy + Delta-G solvation = -4243.942480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11442 -39.79701 -38.84647 -37.16742 -36.83757 -35.13114 -32.77185 -31.90715 -31.49974 -31.02085 -30.26234 -28.37066 -28.00131 -26.28677 -24.57824 -23.39514 -22.94681 -22.32155 -21.50429 -20.75011 -19.25042 -18.17515 -17.34912 -17.15635 -16.79149 -16.32810 -15.90112 -15.57790 -15.39516 -15.12053 -15.08436 -14.87016 -14.43100 -14.25693 -14.11712 -13.95686 -13.35962 -13.32387 -13.10517 -12.80553 -12.72369 -12.41948 -12.30457 -12.09204 -11.72635 -11.58299 -11.36561 -11.24199 -11.06287 -10.94889 -10.86866 -10.52875 -10.46909 -10.25725 -9.67846 -9.29472 -9.09847 -8.85535 -8.76907 -8.41055 -8.21002 -7.80124 -7.71059 -6.26102 -4.26667 1.36055 1.65252 1.68299 1.90298 3.13829 3.14360 3.24154 3.27333 3.33245 3.47922 3.76226 4.12690 4.23441 4.28267 4.51405 4.79452 4.81919 4.85843 4.89929 5.03346 5.21290 5.26346 5.33063 5.41766 5.42219 5.50213 5.55619 5.58920 5.70516 5.89458 5.93518 6.01044 6.05995 6.23126 6.30842 6.36067 6.43727 6.60663 6.66988 6.68800 6.75757 6.88427 7.00162 7.19242 7.25571 7.33235 7.42426 7.61258 8.10644 8.39085 8.63267 8.80878 8.99145 9.33556 10.84905 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.009652 B = 0.004714 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.153427 B = 5938.335948 C = 7839.330718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.083 3.917 3 Si 0.861 3.139 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.536 4.536 8 H 0.083 0.917 9 C 0.200 3.800 10 N -0.585 5.585 11 C 0.176 3.824 12 C 0.120 3.880 13 C -0.124 4.124 14 C -0.080 4.080 15 C -0.179 4.179 16 C 0.085 3.915 17 N -0.460 5.460 18 C 0.570 3.430 19 O -0.527 6.527 20 C -0.117 4.117 21 C -0.065 4.065 22 C -0.128 4.128 23 C -0.100 4.100 24 C 0.025 3.975 25 C 0.090 3.910 26 O -0.290 6.290 27 C 0.018 3.982 28 C 0.021 3.979 29 O -0.310 6.310 30 H 0.266 0.734 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.175 0.825 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -3.006 2.860 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.122 4.122 3 Si 0.687 3.313 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.101 0.899 9 C 0.079 3.921 10 N -0.316 5.316 11 C 0.052 3.948 12 C -0.020 4.020 13 C -0.145 4.145 14 C -0.106 4.106 15 C -0.199 4.199 16 C -0.073 4.073 17 N -0.169 5.169 18 C 0.357 3.643 19 O -0.404 6.404 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.146 4.146 23 C -0.118 4.118 24 C -0.019 4.019 25 C 0.044 3.956 26 O -0.203 6.203 27 C -0.058 4.058 28 C -0.054 4.054 29 O -0.225 6.225 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.192 0.808 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.093 0.907 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.885 -3.882 3.404 11.152 hybrid contribution -0.430 1.513 -0.422 1.628 sum 9.455 -2.370 2.981 10.193 Atomic orbital electron populations 1.69890 1.06103 1.27158 1.48975 1.24817 0.94592 0.98544 0.94201 0.87063 0.80885 0.84353 0.78953 1.20005 1.20860 1.18575 1.21348 0.88893 0.94989 1.52191 0.89909 1.20021 0.96086 0.78040 0.97950 1.47737 1.64047 1.15224 1.04558 1.20086 0.93404 0.94823 0.86517 1.21535 0.97037 0.90786 0.92606 1.21924 0.94061 0.99956 0.98509 1.21463 0.96820 0.94136 0.98149 1.22017 1.00437 0.97229 1.00190 1.22601 0.89653 0.99311 0.95696 1.67544 1.21742 1.07908 1.19699 1.17856 0.77054 0.86269 0.83118 1.90761 1.48015 1.15286 1.86299 1.19300 0.94066 1.02955 0.95763 1.22184 0.98463 0.91388 0.96244 1.20929 0.98048 1.01021 0.94644 1.20516 0.90153 1.00448 1.00716 1.18631 0.89599 1.03473 0.90207 1.18777 0.88003 0.96349 0.92511 1.86423 1.14846 1.57529 1.61518 1.23622 0.86599 1.03233 0.92308 1.23564 0.92465 0.92440 0.96971 1.86276 1.30047 1.51183 1.54994 0.92366 0.94006 0.95499 0.89304 0.89457 0.84759 0.85475 0.85747 0.83740 0.80787 0.84695 0.85120 0.90735 0.86328 0.86470 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.96 13.96 55.43 0.77 -23.19 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.86 18.99 27.47 -169.99 -4.67 14.32 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 7 C -0.54 -13.03 6.67 -34.44 -0.23 -13.26 16 8 H 0.08 2.30 7.24 -52.49 -0.38 1.92 16 9 C 0.20 4.33 3.78 -5.20 -0.02 4.31 16 10 N -0.58 -12.35 2.45 -177.66 -0.44 -12.79 16 11 C 0.18 3.32 5.72 -5.19 -0.03 3.29 16 12 C 0.12 2.34 5.83 -82.59 -0.48 1.86 16 13 C -0.12 -2.27 8.65 -39.44 -0.34 -2.61 16 14 C -0.08 -1.32 10.18 -39.28 -0.40 -1.72 16 15 C -0.18 -2.81 10.11 -39.44 -0.40 -3.21 16 16 C 0.08 1.47 11.18 -17.55 -0.20 1.28 16 17 N -0.46 -9.38 10.27 -9.47 -0.10 -9.47 16 18 C 0.57 12.80 6.84 -12.47 -0.09 12.71 16 19 O -0.53 -12.96 16.27 -1.84 -0.03 -12.99 16 20 C -0.12 -2.45 4.80 -104.84 -0.50 -2.95 16 21 C -0.06 -1.30 7.63 -39.19 -0.30 -1.60 16 22 C -0.13 -2.20 10.02 -39.67 -0.40 -2.59 16 23 C -0.10 -1.58 9.95 -39.36 -0.39 -1.98 16 24 C 0.03 0.43 6.49 -39.17 -0.25 0.17 16 25 C 0.09 1.71 6.49 -38.61 -0.25 1.46 16 26 O -0.29 -5.20 9.49 -40.19 -0.38 -5.58 16 27 C 0.02 0.22 7.26 37.40 0.27 0.49 16 28 C 0.02 0.24 7.26 37.40 0.27 0.51 16 29 O -0.31 -4.56 10.42 -33.01 -0.34 -4.90 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.04 0.93 4.69 -51.93 -0.24 0.69 16 32 H 0.03 0.56 7.40 -51.93 -0.38 0.17 16 33 H 0.09 1.69 7.49 -51.93 -0.39 1.30 16 34 H 0.09 1.39 7.84 -51.93 -0.41 0.98 16 35 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.18 3.93 5.17 -52.49 -0.27 3.66 16 40 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -32.56 374.46 -8.84 -41.40 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.47 Total: 9.41 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.83 Total: -1.85 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.24 Total: -45.45 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.76 Total: -23.47 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.67 Total: 14.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.56 -8.84 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078727108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.370 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds