Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00395 * 2 1 4 4 H 1.48488 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46906 * 300.00422 * 3 2 1 6 6 H 1.48503 * 109.46711 * 59.99933 * 3 2 1 7 7 C 1.37879 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99701 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00038 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47260 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00047 * 270.00020 * 10 9 7 12 12 C 1.52998 * 109.46983 * 275.09627 * 11 10 9 13 13 F 1.39901 * 109.47289 * 59.99890 * 12 11 10 14 14 F 1.39904 * 109.47140 * 180.02562 * 12 11 10 15 15 F 1.39900 * 109.47105 * 300.00006 * 12 11 10 16 16 C 1.34780 * 119.99758 * 89.99637 * 10 9 7 17 17 O 1.21550 * 120.00546 * 5.45197 * 16 10 9 18 18 C 1.47850 * 119.99585 * 185.45058 * 16 10 9 19 19 C 1.39591 * 120.14705 * 54.93363 * 18 16 10 20 20 C 1.37935 * 119.85415 * 179.71998 * 19 18 16 21 21 C 1.38390 * 120.14435 * 0.27982 * 20 19 18 22 22 C 1.38336 * 120.28882 * 359.97438 * 21 20 19 23 23 C 1.37980 * 120.14944 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.07423 * 180.02562 * 23 22 21 25 25 F 1.39903 * 109.47018 * 0.02562 * 24 23 22 26 26 F 1.39901 * 109.46705 * 119.99862 * 24 23 22 27 27 F 1.39902 * 109.47311 * 239.99927 * 24 23 22 28 28 H 0.97009 * 120.00009 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47385 * 59.99733 * 9 7 2 30 30 H 1.09000 * 109.47070 * 299.99921 * 9 7 2 31 31 H 1.08999 * 109.47138 * 35.09559 * 11 10 9 32 32 H 1.08996 * 109.47236 * 155.09824 * 11 10 9 33 33 H 1.07999 * 120.07128 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.92708 * 180.25920 * 20 19 18 35 35 H 1.07999 * 119.85013 * 179.97438 * 21 20 19 36 36 H 1.08004 * 119.92502 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6788 -4.1695 -1.2692 12 6 1.6802 -5.2126 -1.7749 13 9 0.4333 -4.6087 -1.9692 14 9 2.1350 -5.7448 -2.9862 15 9 1.5595 -6.2385 -0.8315 16 6 2.6407 -4.1249 1.1667 17 8 2.1726 -3.7311 2.2170 18 6 3.6906 -5.1659 1.1696 19 6 4.9073 -4.9363 0.5250 20 6 5.8848 -5.9095 0.5364 21 6 5.6591 -7.1137 1.1800 22 6 4.4535 -7.3496 1.8161 23 6 3.4678 -6.3841 1.8131 24 6 2.1553 -6.6427 2.5071 25 9 2.1731 -7.9201 3.0774 26 9 1.9623 -5.6872 3.5105 27 9 1.1125 -6.5607 1.5781 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8902 30 1 0.6246 -2.5570 0.8897 31 1 2.7728 -3.3702 -2.0043 32 1 3.6502 -4.6401 -1.1178 33 1 5.0848 -3.9968 0.0228 34 1 6.8282 -5.7314 0.0417 35 1 6.4276 -7.8725 1.1855 36 1 4.2835 -8.2916 2.3162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078968353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = -300.016548 kcal Electronic energy + Delta-G solvation = -34263.952925 eV Core-core repulsion = 28690.820847 eV Total energy + Delta-G solvation = -5573.132078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.88572 -49.76732 -47.47130 -47.32679 -47.21521 -47.19581 -40.29384 -38.31197 -35.49093 -32.92811 -32.20217 -31.49643 -29.33473 -27.32962 -25.99829 -24.17733 -23.33122 -22.67733 -21.90212 -19.70858 -18.49018 -18.24748 -18.19626 -18.12997 -18.09234 -17.46264 -16.76110 -16.14726 -15.87698 -15.40860 -15.36578 -14.64610 -14.42755 -14.27409 -14.20489 -14.12410 -14.09276 -13.79102 -13.71626 -13.67651 -13.45520 -13.44450 -13.41213 -13.28653 -13.14616 -12.96119 -12.73698 -12.39742 -12.22829 -11.94480 -11.76786 -11.37479 -11.31507 -11.02013 -10.71251 -10.30290 -9.82791 -9.49283 -9.44042 -9.14373 -8.53623 -8.12024 -6.14755 -4.21482 0.62198 0.86672 2.72191 2.79263 3.04876 3.23949 3.31321 3.33137 3.37337 3.43172 3.83360 4.11645 4.13046 4.25480 4.29448 4.35582 4.64453 4.65000 4.69624 4.72327 5.00051 5.11306 5.15816 5.20285 5.29058 5.48080 5.54799 5.88592 5.93593 6.04266 6.43480 6.74254 7.15648 7.31723 7.78525 7.91882 8.06018 8.51480 8.82177 9.43934 10.93585 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.004750 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.207442 B = 5893.940972 C = 6368.147519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.240 3.760 10 N -0.583 5.583 11 C 0.062 3.938 12 C 0.428 3.572 13 F -0.173 7.173 14 F -0.189 7.189 15 F -0.180 7.180 16 C 0.544 3.456 17 O -0.492 6.492 18 C -0.068 4.068 19 C -0.102 4.102 20 C -0.091 4.091 21 C -0.110 4.110 22 C -0.077 4.077 23 C -0.140 4.140 24 C 0.500 3.500 25 F -0.184 7.184 26 F -0.154 7.154 27 F -0.167 7.167 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -15.707 -2.197 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.122 3.878 10 N -0.314 5.314 11 C -0.066 4.066 12 C 0.372 3.628 13 F -0.154 7.154 14 F -0.170 7.170 15 F -0.161 7.161 16 C 0.329 3.671 17 O -0.366 6.366 18 C -0.072 4.072 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.128 4.128 22 C -0.095 4.095 23 C -0.142 4.142 24 C 0.446 3.554 25 F -0.166 7.166 26 F -0.135 7.135 27 F -0.148 7.148 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.133 0.867 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.902 -15.346 -1.587 18.891 hybrid contribution 0.047 0.703 -0.087 0.710 sum 10.949 -14.643 -1.674 18.360 Atomic orbital electron populations 1.69948 1.06024 1.27199 1.49412 1.24932 0.94888 0.99283 0.94758 0.86410 0.79868 0.83212 0.77723 1.19766 1.20856 1.20790 1.21379 0.93367 0.90299 1.52421 0.92143 1.19625 0.87150 0.81106 0.99876 1.48095 1.46222 1.34960 1.02140 1.22869 0.95782 0.96780 0.91137 1.21549 0.83097 0.82902 0.75301 1.93224 1.44453 1.82832 1.94933 1.93149 1.88945 1.87842 1.47098 1.93215 1.96349 1.61851 1.64692 1.18189 0.82277 0.81759 0.84889 1.90889 1.56074 1.59490 1.30103 1.20066 0.96427 0.93612 0.97102 1.21386 0.91960 1.00428 0.98248 1.21341 0.98978 0.93023 0.97532 1.21280 0.96716 0.97662 0.97146 1.20987 0.92407 0.98403 0.97703 1.20016 0.94647 0.96404 1.03121 1.18266 0.85221 0.74088 0.77860 1.93129 1.96788 1.40825 1.85825 1.93348 1.95623 1.63147 1.61359 1.93281 1.60374 1.95808 1.65356 0.92520 0.93590 0.92959 0.85156 0.86667 0.83765 0.84389 0.84522 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.54 -14.30 9.39 -34.44 -0.32 -14.62 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 6.02 4.99 -5.19 -0.03 5.99 16 10 N -0.58 -11.80 2.37 -176.18 -0.42 -12.22 16 11 C 0.06 0.95 5.27 -4.04 -0.02 0.93 16 12 C 0.43 6.82 3.29 37.16 0.12 6.94 16 13 F -0.17 -3.21 15.76 2.25 0.04 -3.17 16 14 F -0.19 -2.66 17.32 2.25 0.04 -2.62 16 15 F -0.18 -3.02 14.56 2.25 0.03 -2.98 16 16 C 0.54 11.13 5.70 -12.33 -0.07 11.06 16 17 O -0.49 -12.10 13.89 5.32 0.07 -12.02 16 18 C -0.07 -1.08 4.61 -104.97 -0.48 -1.56 16 19 C -0.10 -1.21 7.48 -39.19 -0.29 -1.50 16 20 C -0.09 -0.78 10.03 -39.64 -0.40 -1.18 16 21 C -0.11 -0.92 10.04 -39.49 -0.40 -1.31 16 22 C -0.08 -0.83 9.42 -39.64 -0.37 -1.20 16 23 C -0.14 -2.06 5.40 -104.22 -0.56 -2.62 16 24 C 0.50 8.35 2.87 36.01 0.10 8.46 16 25 F -0.18 -2.64 15.98 2.25 0.04 -2.60 16 26 F -0.15 -2.98 14.61 2.25 0.03 -2.95 16 27 F -0.17 -3.08 14.38 2.25 0.03 -3.05 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.18 6.80 -51.93 -0.35 0.82 16 30 H 0.05 1.51 7.35 -51.93 -0.38 1.12 16 31 H 0.13 1.85 8.11 -51.93 -0.42 1.43 16 32 H 0.12 1.41 4.40 -51.93 -0.23 1.18 16 33 H 0.14 1.56 7.56 -52.49 -0.40 1.17 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.14 1.24 7.15 -52.48 -0.38 0.86 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -32.61 330.57 -4.81 -37.42 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -2.55 Total: -2.85 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -2.82 Total: 11.05 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.32 Total: -37.14 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 9 Polarization: -17.58 SS G_CDS: 0.21 Total: -17.38 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.61 -4.81 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078968353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -262.598 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -295.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -300.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds