Wall clock time and date at job start Tue Mar 31 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47291 * 2 1 4 4 O 1.42894 * 109.47573 * 120.00232 * 2 1 3 5 5 C 1.35913 * 117.00597 * 275.00346 * 4 2 1 6 6 C 1.38727 * 120.05671 * 5.47897 * 5 4 2 7 7 C 1.38142 * 119.95561 * 180.02562 * 6 5 4 8 8 C 1.38284 * 120.07190 * 359.97438 * 7 6 5 9 9 C 1.38243 * 120.11422 * 0.02562 * 8 7 6 10 10 C 1.38230 * 120.05108 * 0.24746 * 9 8 7 11 11 Br 1.89102 * 120.04009 * 179.74773 * 10 9 8 12 12 C 1.50701 * 109.47093 * 240.00677 * 2 1 3 13 13 O 1.21289 * 119.99942 * 245.00041 * 12 2 1 14 14 N 1.34771 * 120.00461 * 64.99685 * 12 2 1 15 15 C 1.46500 * 120.00524 * 180.02562 * 14 12 2 16 16 C 1.52994 * 109.47454 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47443 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47338 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00013 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00217 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00286 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46741 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47003 * 119.99528 * 22 20 18 25 25 H 1.48498 * 109.46883 * 239.99475 * 22 20 18 26 26 H 1.09000 * 109.46663 * 299.99455 * 1 2 3 27 27 H 1.09003 * 109.47047 * 59.99470 * 1 2 3 28 28 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.02022 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.95986 * 180.02562 * 7 6 5 31 31 H 1.07992 * 119.93997 * 180.02562 * 8 7 6 32 32 H 1.08004 * 119.97332 * 179.97438 * 9 8 7 33 33 H 0.97011 * 119.99748 * 0.02562 * 14 12 2 34 34 H 1.09000 * 109.46605 * 299.99842 * 15 14 12 35 35 H 1.08996 * 109.47017 * 59.99766 * 15 14 12 36 36 H 1.09001 * 109.46943 * 300.00000 * 16 15 14 37 37 H 1.09004 * 109.47259 * 59.99459 * 16 15 14 38 38 H 1.09001 * 109.47092 * 299.99959 * 17 16 15 39 39 H 1.08996 * 109.46981 * 59.99593 * 17 16 15 40 40 H 0.97003 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1126 0.0625 2.3042 6 6 1.6595 1.3735 2.3284 7 6 1.7690 2.1199 3.4856 8 6 2.3291 1.5616 4.6199 9 6 2.7816 0.2555 4.5992 10 6 2.6796 -0.4941 3.4422 11 35 3.3051 -2.2784 3.4121 12 6 2.0323 -0.7103 -1.2306 13 8 2.6530 -1.7466 -1.1217 14 7 1.7919 -0.1940 -2.4520 15 6 2.2797 -0.8848 -3.6483 16 6 1.8756 -0.0942 -4.8943 17 6 2.3856 -0.8152 -6.1436 18 6 1.9881 -0.0361 -7.3707 19 1 1.4273 0.8813 -7.2698 20 6 2.3393 -0.4951 -8.6225 21 7 3.0217 -1.6127 -8.7455 22 14 1.8459 0.4702 -10.1438 23 1 1.0893 1.6816 -9.7374 24 1 3.0644 0.8743 -10.8903 25 1 0.9915 -0.3783 -11.0128 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.2216 1.8102 1.4430 30 1 1.4159 3.1404 3.5045 31 1 2.4133 2.1470 5.5235 32 1 3.2191 -0.1782 5.4863 33 1 1.2957 0.6350 -2.5391 34 1 3.3660 -0.9633 -3.6048 35 1 1.8448 -1.8831 -3.6941 36 1 0.7893 -0.0152 -4.9379 37 1 2.3109 0.9041 -4.8482 38 1 3.4719 -0.8938 -6.0997 39 1 1.9507 -1.8136 -6.1898 40 1 3.2692 -1.9354 -9.6262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078996432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:18 Heat of formation + Delta-G solvation = -58.350610 kcal Electronic energy + Delta-G solvation = -22231.431369 eV Core-core repulsion = 18671.464752 eV Total energy + Delta-G solvation = -3559.966617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95112 -39.45660 -37.70722 -35.45569 -33.55643 -32.94502 -32.11528 -30.93274 -30.51760 -29.15476 -26.92195 -25.01511 -23.52316 -22.76228 -22.26796 -20.79906 -19.94349 -18.76731 -17.47039 -16.50414 -16.32879 -16.09925 -16.02622 -15.30233 -15.12959 -14.92074 -14.48433 -14.15984 -13.88661 -13.81151 -13.42925 -13.11839 -12.76290 -12.34711 -12.20180 -12.15084 -11.88295 -11.80798 -11.45253 -11.26898 -11.10618 -10.94939 -10.78815 -10.60461 -10.31506 -9.92265 -9.90190 -9.43261 -9.24285 -9.14130 -8.89948 -8.57221 -8.40576 -6.04827 -4.08155 0.67879 0.90550 1.46815 2.37405 2.57830 3.19334 3.27764 3.35310 3.38237 3.44863 4.24508 4.32143 4.41496 4.45626 4.53172 4.61158 4.69566 4.81850 5.01353 5.20020 5.22562 5.28272 5.31072 5.62231 5.64693 5.70740 5.71820 5.76293 5.96946 6.09568 6.19821 6.35985 6.53428 6.72956 6.87618 6.94263 7.54571 7.60139 7.71894 7.93617 8.22826 8.34556 8.98703 9.56273 11.06447 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.001905 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.180654 B =14691.444493 C =15629.116393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 H 0.099 0.901 4 O -0.269 6.269 5 C 0.160 3.840 6 C -0.209 4.209 7 C -0.064 4.064 8 C -0.156 4.156 9 C -0.053 4.053 10 C -0.126 4.126 11 Br -0.032 7.032 12 C 0.511 3.489 13 O -0.514 6.514 14 N -0.720 5.720 15 C 0.118 3.882 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 7.292 31.080 32.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.004 3.996 3 H 0.117 0.883 4 O -0.181 6.181 5 C 0.111 3.889 6 C -0.228 4.228 7 C -0.082 4.082 8 C -0.175 4.175 9 C -0.073 4.073 10 C -0.206 4.206 11 Br 0.054 6.946 12 C 0.295 3.705 13 O -0.388 6.388 14 N -0.373 5.373 15 C -0.004 4.004 16 C -0.158 4.158 17 C -0.015 4.015 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.183 5.502 30.956 31.601 hybrid contribution -0.686 1.499 -1.044 1.951 sum -3.869 7.002 29.912 30.963 Atomic orbital electron populations 1.22344 0.92315 1.04811 1.03899 1.22336 0.95988 0.97085 0.84231 0.88344 1.86348 1.80131 1.36242 1.15352 1.18710 0.93531 0.90233 0.86386 1.21342 1.07155 0.93563 1.00761 1.21097 0.95584 0.99593 0.91947 1.21082 1.02101 0.95124 0.99218 1.21009 0.96733 0.93743 0.95817 1.21136 1.09651 0.94533 0.95326 1.96770 1.87038 1.11754 1.99062 1.19926 0.80711 0.85843 0.84056 1.90774 1.39043 1.22768 1.86237 1.46083 1.57738 1.27822 1.05678 1.21708 0.99516 0.96542 0.82682 1.21894 1.00601 0.99126 0.94201 1.19037 0.96720 0.95740 0.89961 1.21223 1.35346 1.08465 0.91035 0.92588 1.25041 0.95165 0.95084 0.99234 1.69976 1.38636 1.21052 1.23521 0.86522 0.78289 0.80020 0.83071 1.19769 1.20983 1.20989 0.90705 0.89848 0.90354 0.84345 0.85024 0.84989 0.84407 0.76778 0.91535 0.91496 0.92637 0.92660 0.96226 0.96217 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.13 37.16 0.34 -1.06 16 2 C 0.06 0.67 2.63 -27.88 -0.07 0.60 16 3 H 0.10 0.78 6.31 -51.93 -0.33 0.45 16 4 O -0.27 -3.50 8.67 -39.33 -0.34 -3.84 16 5 C 0.16 1.75 6.59 -39.20 -0.26 1.49 16 6 C -0.21 -1.67 8.25 -39.44 -0.33 -2.00 16 7 C -0.06 -0.41 10.04 -39.60 -0.40 -0.81 16 8 C -0.16 -1.01 10.04 -39.56 -0.40 -1.41 16 9 C -0.05 -0.43 9.78 -39.58 -0.39 -0.82 16 10 C -0.13 -1.36 6.24 -39.38 -0.25 -1.60 16 11 Br -0.03 -0.37 33.16 -68.01 -2.26 -2.63 16 12 C 0.51 7.43 7.18 -10.99 -0.08 7.35 16 13 O -0.51 -9.99 16.51 -14.31 -0.24 -10.23 16 14 N -0.72 -9.57 5.52 -60.30 -0.33 -9.91 16 15 C 0.12 1.99 5.67 -4.05 -0.02 1.97 16 16 C -0.12 -2.25 5.27 -26.74 -0.14 -2.39 16 17 C 0.02 0.57 4.97 -27.89 -0.14 0.44 16 18 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.07 0.48 6.91 -51.93 -0.36 0.12 16 27 H 0.08 0.51 7.93 -51.93 -0.41 0.09 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.14 0.83 5.43 -52.49 -0.28 0.54 16 30 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 31 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.40 3.93 8.26 -40.82 -0.34 3.60 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -34.01 360.42 -10.05 -44.06 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.49 Total: -1.83 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.54 Total: -11.42 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.40 Total: -35.78 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.58 Total: -14.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.26 Total: -2.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.01 -10.05 -44.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078996432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.292 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds