Wall clock time and date at job start Tue Mar 31 2020 05:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00328 * 2 1 4 4 H 1.48497 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46797 * 299.99769 * 3 2 1 6 6 H 1.48497 * 109.46954 * 59.99553 * 3 2 1 7 7 C 1.37879 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99580 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00250 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00463 * 82.58382 * 10 9 7 12 12 O 1.21651 * 119.99988 * 185.76252 * 11 10 9 13 13 C 1.47237 * 120.00103 * 5.77061 * 11 10 9 14 14 C 1.35106 * 122.43527 * 184.90186 * 13 11 10 15 15 S 1.71011 * 109.14099 * 179.74578 * 14 13 11 16 16 C 1.75998 * 90.59162 * 0.34056 * 15 14 13 17 17 C 1.47874 * 125.31079 * 179.91784 * 16 15 14 18 18 C 1.46856 * 127.14749 * 355.12937 * 17 16 15 19 19 C 1.34303 * 106.01004 * 180.12223 * 18 17 16 20 20 O 1.34177 * 109.05080 * 359.63952 * 19 18 17 21 21 C 1.34001 * 110.80349 * 0.23991 * 20 19 18 22 22 N 1.29871 * 109.36697 * 359.65363 * 16 15 14 23 23 C 1.39860 * 119.99807 * 262.58509 * 10 9 7 24 24 C 1.38895 * 120.06905 * 7.67146 * 23 10 9 25 25 C 1.38113 * 119.92377 * 179.76346 * 24 23 10 26 26 C 1.38286 * 120.07102 * 0.49096 * 25 24 23 27 27 C 1.38278 * 120.14609 * 359.76434 * 26 25 24 28 28 C 1.38112 * 120.07593 * 0.02562 * 27 26 25 29 29 H 0.97001 * 120.00043 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.47364 * 60.00427 * 9 7 2 31 31 H 1.08994 * 109.47066 * 299.99872 * 9 7 2 32 32 H 1.07996 * 125.42704 * 0.02562 * 14 13 11 33 33 H 1.08001 * 126.99248 * 0.02562 * 18 17 16 34 34 H 1.08003 * 125.47096 * 179.90623 * 19 18 17 35 35 H 1.07999 * 125.78899 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.03743 * 359.97438 * 24 23 10 37 37 H 1.08000 * 119.95944 * 180.24975 * 25 24 23 38 38 H 1.08003 * 119.92281 * 179.73777 * 26 25 24 39 39 H 1.08002 * 119.96742 * 179.97438 * 27 26 25 40 40 H 1.07992 * 120.03801 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0027 11 6 2.7553 -4.0261 1.1604 12 8 3.6228 -4.8789 1.1500 13 6 2.3088 -3.4456 2.4377 14 6 2.8937 -3.7516 3.6165 15 16 2.1161 -2.8861 4.8698 16 6 1.0168 -2.1537 3.7067 17 6 -0.0591 -1.1938 4.0346 18 6 -0.4762 -0.7520 5.3716 19 6 -1.4839 0.1145 5.1778 20 8 -1.7055 0.2409 3.8605 21 6 -0.8648 -0.5325 3.1600 22 7 1.3018 -2.5838 2.5148 23 6 2.5384 -4.2469 -1.1979 24 6 2.0975 -3.7254 -2.4073 25 6 2.4347 -4.3513 -3.5914 26 6 3.2019 -5.5016 -3.5730 27 6 3.6380 -6.0264 -2.3703 28 6 3.3080 -5.4030 -1.1829 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5576 -0.8880 31 1 0.6246 -2.5563 0.8919 32 1 3.7234 -4.4308 3.7461 33 1 -0.0587 -1.0621 6.3182 34 1 -2.0256 0.6302 5.9569 35 1 -0.8319 -0.6163 2.0838 36 1 1.4945 -2.8295 -2.4220 37 1 2.0956 -3.9440 -4.5324 38 1 3.4607 -5.9915 -4.5001 39 1 4.2367 -6.9252 -2.3592 40 1 3.6485 -5.8135 -0.2439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078999961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:27 Heat of formation + Delta-G solvation = 89.565970 kcal Electronic energy + Delta-G solvation = -28635.647158 eV Core-core repulsion = 24703.593660 eV Total energy + Delta-G solvation = -3932.053499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11642 -40.54565 -38.90483 -37.45129 -35.24409 -33.16006 -32.65426 -30.57191 -30.28200 -29.50412 -28.75392 -27.19808 -25.59786 -23.70928 -23.14136 -21.91920 -21.42085 -21.00393 -19.65047 -18.68002 -18.07939 -17.26894 -16.76555 -16.57853 -15.85299 -15.71812 -15.55634 -14.96444 -14.87435 -14.50179 -14.22730 -13.67906 -13.63440 -13.51066 -13.09396 -12.89983 -12.80582 -12.67880 -12.41156 -12.16825 -12.00306 -11.77454 -11.49788 -11.22678 -11.02085 -10.86285 -10.58915 -10.28689 -10.18602 -10.07431 -9.32757 -9.16112 -9.02485 -8.87828 -8.80723 -8.35924 -8.29374 -7.88543 -7.14864 -6.19457 -4.20576 0.66442 1.49248 1.71306 1.87921 1.99020 2.09480 2.34634 3.14783 3.19876 3.29367 3.34232 3.35269 3.64173 3.89432 4.21325 4.33827 4.51776 4.99516 5.07406 5.15855 5.27215 5.41604 5.44692 5.49608 5.59798 5.64805 5.70379 5.96018 6.04572 6.12476 6.17476 6.25000 6.46359 6.54100 6.67959 6.80700 6.96267 7.01956 7.10919 7.30008 7.34577 7.55601 7.75608 7.80787 7.95201 8.07709 8.11491 8.67346 8.84155 9.42061 10.88253 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.004456 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.406091 B = 6282.801552 C = 7962.807746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.885 3.115 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.199 3.801 10 N -0.517 5.517 11 C 0.591 3.409 12 O -0.540 6.540 13 C 0.036 3.964 14 C -0.228 4.228 15 S 0.130 5.870 16 C 0.142 3.858 17 C -0.156 4.156 18 C -0.198 4.198 19 C -0.047 4.047 20 O -0.179 6.179 21 C 0.061 3.939 22 N -0.385 5.385 23 C 0.168 3.832 24 C -0.144 4.144 25 C -0.104 4.104 26 C -0.161 4.161 27 C -0.108 4.108 28 C -0.174 4.174 29 H 0.263 0.737 30 H 0.039 0.961 31 H 0.107 0.893 32 H 0.185 0.815 33 H 0.151 0.849 34 H 0.202 0.798 35 H 0.244 0.756 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 -4.118 7.874 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.713 3.287 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.081 3.919 10 N -0.234 5.234 11 C 0.379 3.621 12 O -0.422 6.422 13 C -0.099 4.099 14 C -0.370 4.370 15 S 0.389 5.611 16 C -0.135 4.135 17 C -0.161 4.161 18 C -0.219 4.219 19 C -0.113 4.113 20 O -0.073 6.073 21 C -0.012 4.012 22 N -0.099 5.099 23 C 0.072 3.928 24 C -0.164 4.164 25 C -0.123 4.123 26 C -0.180 4.180 27 C -0.127 4.127 28 C -0.194 4.194 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.202 0.798 33 H 0.168 0.832 34 H 0.218 0.782 35 H 0.260 0.740 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.603 -3.976 8.482 9.504 hybrid contribution 1.128 0.734 -0.829 1.581 sum -0.475 -3.241 7.653 8.325 Atomic orbital electron populations 1.69781 1.05596 1.26773 1.51493 1.24685 0.94809 0.98401 0.94948 0.86623 0.80329 0.83927 0.77813 1.19989 1.20799 1.20802 1.21352 0.93122 0.90339 1.49559 0.92826 1.20676 0.88141 0.81289 1.01821 1.45920 1.41662 1.32352 1.03469 1.17277 0.80983 0.81054 0.82749 1.90451 1.31919 1.33318 1.86473 1.19973 0.96221 0.99274 0.94465 1.26269 1.07314 1.07634 0.95791 1.83517 1.27362 1.37439 1.12733 1.25182 0.98427 1.00309 0.89543 1.19006 1.00217 1.03698 0.93189 1.22680 1.00323 1.02127 0.96753 1.23778 1.01061 1.02846 0.83645 1.83969 1.50707 1.54713 1.17962 1.25717 0.87461 0.88554 0.99515 1.67583 1.14113 1.09033 1.19131 1.18101 0.96365 0.92356 0.85977 1.21131 1.03108 1.01513 0.90668 1.20867 0.98438 0.95693 0.97285 1.20978 1.01562 0.97923 0.97564 1.20990 0.99824 0.99496 0.92351 1.22429 1.00397 0.95357 1.01184 0.92707 0.94267 0.87665 0.79764 0.83160 0.78157 0.74025 0.84366 0.86434 0.87093 0.86736 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.23 11.53 55.43 0.64 -21.59 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -12.94 8.71 -34.44 -0.30 -13.24 16 8 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 9 C 0.20 4.73 4.26 -5.19 -0.02 4.71 16 10 N -0.52 -11.64 2.70 -116.00 -0.31 -11.95 16 11 C 0.59 12.93 7.47 -12.61 -0.09 12.84 16 12 O -0.54 -11.82 13.17 5.23 0.07 -11.76 16 13 C 0.04 0.73 6.45 -84.92 -0.55 0.18 16 14 C -0.23 -3.78 10.56 29.62 0.31 -3.47 16 15 S 0.13 1.86 23.08 -107.50 -2.48 -0.62 16 16 C 0.14 2.55 7.46 -14.44 -0.11 2.45 16 17 C -0.16 -2.65 6.32 -103.25 -0.65 -3.30 16 18 C -0.20 -2.61 11.05 -37.49 -0.41 -3.03 16 19 C -0.05 -0.57 12.04 29.34 0.35 -0.22 16 20 O -0.18 -2.80 10.54 6.85 0.07 -2.73 16 21 C 0.06 1.10 12.05 29.95 0.36 1.46 16 22 N -0.39 -7.92 6.13 -8.11 -0.05 -7.97 16 23 C 0.17 3.57 6.48 -83.71 -0.54 3.03 16 24 C -0.14 -2.86 9.16 -39.38 -0.36 -3.22 16 25 C -0.10 -1.75 10.04 -39.61 -0.40 -2.15 16 26 C -0.16 -2.53 10.04 -39.55 -0.40 -2.93 16 27 C -0.11 -1.80 10.04 -39.61 -0.40 -2.20 16 28 C -0.17 -3.42 8.97 -39.39 -0.35 -3.77 16 29 H 0.26 6.28 8.31 -40.82 -0.34 5.94 16 30 H 0.04 0.97 6.14 -51.93 -0.32 0.65 16 31 H 0.11 2.55 4.81 -57.04 -0.27 2.28 16 32 H 0.19 2.69 8.00 -52.49 -0.42 2.27 16 33 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.20 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.24 4.98 6.22 -52.49 -0.33 4.66 16 36 H 0.14 2.89 6.21 -52.49 -0.33 2.57 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.17 3.45 4.72 -55.17 -0.26 3.19 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -28.09 357.09 -8.95 -37.04 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -3.59 Total: 9.84 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.66 Total: -11.13 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.28 Total: -41.52 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.14 Total: -14.48 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.48 Total: -0.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.09 -8.95 -37.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.604 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds