Wall clock time and date at job start Tue Mar 31 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48493 * 109.47243 * 240.00043 * 3 2 1 5 5 H 1.48504 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47253 * 119.99589 * 3 2 1 7 7 C 1.39907 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99748 * 175.55991 * 7 2 1 9 9 C 1.41146 * 120.00277 * 355.56034 * 7 2 1 10 10 C 1.40872 * 120.16405 * 214.78029 * 9 7 2 11 11 C 1.36378 * 119.82620 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.17065 * 359.97438 * 11 10 9 13 13 N 1.39235 * 119.83234 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99944 * 35.29208 * 13 12 11 15 15 O 1.21284 * 120.00438 * 355.70519 * 14 13 12 16 16 C 1.50705 * 119.99923 * 175.70827 * 14 13 12 17 17 C 1.53001 * 109.47327 * 179.97438 * 16 14 13 18 18 O 1.42900 * 109.47228 * 179.97438 * 17 16 14 19 19 C 1.35653 * 116.99886 * 180.02562 * 18 17 16 20 20 C 1.38710 * 120.15152 * 359.97438 * 19 18 17 21 21 C 1.38051 * 120.08582 * 180.02562 * 20 19 18 22 22 C 1.38547 * 120.39126 * 359.97438 * 21 20 19 23 23 C 1.37793 * 120.29721 * 0.02562 * 22 21 20 24 24 C 1.39706 * 119.91110 * 359.97438 * 23 22 21 25 25 C 1.47527 * 120.19301 * 179.97438 * 24 23 22 26 26 N 1.34776 * 120.00354 * 0.02562 * 25 24 23 27 27 O 1.21594 * 120.00046 * 180.02562 * 25 24 23 28 28 C 1.39478 * 120.33061 * 0.25849 * 12 11 10 29 29 C 1.36382 * 120.17164 * 359.47937 * 28 12 11 30 30 H 0.96996 * 119.99724 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.08529 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.91190 * 179.97438 * 11 10 9 33 33 H 0.97002 * 119.99938 * 215.29161 * 13 12 11 34 34 H 1.09007 * 109.47155 * 59.99771 * 16 14 13 35 35 H 1.08995 * 109.46874 * 300.00080 * 16 14 13 36 36 H 1.09007 * 109.46788 * 60.00039 * 17 16 14 37 37 H 1.08998 * 109.47327 * 300.00560 * 17 16 14 38 38 H 1.08000 * 119.95588 * 0.02562 * 20 19 18 39 39 H 1.07997 * 119.80746 * 180.27303 * 21 20 19 40 40 H 1.07997 * 119.85456 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.04555 * 180.02562 * 23 22 21 42 42 H 0.97001 * 119.99758 * 359.97438 * 26 25 24 43 43 H 0.97003 * 120.00504 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.91439 * 179.74791 * 28 12 11 45 45 H 1.07990 * 120.08608 * 180.25580 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2124 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2131 -0.0719 9 6 1.3057 -2.4322 0.0957 10 6 1.8651 -3.5180 0.7976 11 6 1.1805 -4.6943 0.8848 12 6 -0.0706 -4.8236 0.2817 13 7 -0.7631 -6.0280 0.3747 14 6 -0.6805 -6.7678 1.4981 15 8 0.0573 -6.4246 2.3975 16 6 -1.5051 -8.0216 1.6370 17 6 -1.2260 -8.6677 2.9955 18 8 -2.0083 -9.8563 3.1274 19 6 -1.8780 -10.5541 4.2834 20 6 -1.0151 -10.1076 5.2733 21 6 -0.8832 -10.8192 6.4489 22 6 -1.6097 -11.9816 6.6499 23 6 -2.4715 -12.4397 5.6772 24 6 -2.6147 -11.7295 4.4827 25 6 -3.5352 -12.2146 3.4369 26 7 -4.2414 -13.3457 3.6324 27 8 -3.6567 -11.5939 2.3984 28 6 -0.6286 -3.7546 -0.4191 29 6 0.0416 -2.5703 -0.5104 30 1 -0.4849 0.8400 0.0004 31 1 2.8334 -3.4191 1.2654 32 1 1.6082 -5.5277 1.4222 33 1 -1.3050 -6.3345 -0.3692 34 1 -1.2418 -8.7195 0.8422 35 1 -2.5632 -7.7704 1.5642 36 1 -1.4890 -7.9699 3.7906 37 1 -0.1678 -8.9188 3.0679 38 1 -0.4457 -9.2021 5.1242 39 1 -0.2133 -10.4650 7.2185 40 1 -1.4994 -12.5317 7.5728 41 1 -3.0361 -13.3462 5.8384 42 1 -4.1441 -13.8411 4.4607 43 1 -4.8469 -13.6645 2.9449 44 1 -1.5959 -3.8634 -0.8869 45 1 -0.3936 -1.7421 -1.0497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079020535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:33 Heat of formation + Delta-G solvation = -63.503942 kcal Electronic energy + Delta-G solvation = -29047.411360 eV Core-core repulsion = 24801.800476 eV Total energy + Delta-G solvation = -4245.610885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.83836 -39.78594 -38.93141 -37.69734 -37.21398 -34.48220 -34.01461 -32.99694 -32.21392 -31.24756 -30.02809 -29.58292 -28.77782 -25.61715 -24.50404 -24.06805 -22.19423 -21.47701 -21.01610 -20.58546 -19.59609 -18.94053 -17.69614 -17.32649 -17.11938 -16.65531 -16.48985 -16.31662 -15.64814 -15.32474 -15.18055 -15.06942 -14.97783 -14.54042 -13.94665 -13.78817 -13.61518 -13.53788 -13.30635 -12.84286 -12.63612 -12.31692 -12.19197 -12.04876 -11.95237 -11.69936 -11.37520 -11.31617 -11.13538 -11.02127 -10.89549 -10.73651 -10.13963 -10.05985 -9.94839 -9.50587 -9.45792 -9.44209 -9.15579 -8.89484 -8.54815 -7.55577 -6.87929 -6.62276 -4.35057 0.51317 1.04383 2.51670 2.64838 2.74684 3.01584 3.08069 3.09498 3.11835 3.21927 3.33531 3.53302 3.86483 3.97906 4.35158 4.39924 4.59539 4.69100 4.74820 4.83344 4.88053 4.95340 5.07518 5.17021 5.37991 5.43484 5.63624 5.65669 5.68091 5.77739 5.90237 6.06557 6.19171 6.32374 6.43262 6.50274 6.73857 6.90229 6.99817 7.05955 7.17464 7.19590 7.28707 7.62980 7.72785 7.84522 8.05196 8.05356 8.24057 8.30588 8.60531 8.70565 8.92032 8.98974 10.28731 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.001637 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.347451 B =17101.717543 C =17888.949269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.001 3.999 13 N -0.648 5.648 14 C 0.505 3.495 15 O -0.535 6.535 16 C -0.136 4.136 17 C 0.069 3.931 18 O -0.282 6.282 19 C 0.196 3.804 20 C -0.218 4.218 21 C -0.049 4.049 22 C -0.172 4.172 23 C -0.050 4.050 24 C -0.184 4.184 25 C 0.563 3.437 26 N -0.858 5.858 27 O -0.519 6.519 28 C -0.120 4.120 29 C -0.141 4.141 30 H 0.278 0.722 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.398 0.602 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.397 0.603 43 H 0.403 0.597 44 H 0.092 0.908 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 -24.317 9.921 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.091 4.091 13 N -0.290 5.290 14 C 0.291 3.709 15 O -0.413 6.413 16 C -0.176 4.176 17 C -0.006 4.006 18 O -0.193 6.193 19 C 0.147 3.853 20 C -0.237 4.237 21 C -0.067 4.067 22 C -0.190 4.190 23 C -0.069 4.069 24 C -0.188 4.188 25 C 0.350 3.650 26 N -0.423 5.423 27 O -0.394 6.394 28 C -0.140 4.140 29 C -0.161 4.161 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.232 0.768 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.226 0.774 43 H 0.234 0.766 44 H 0.110 0.890 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.293 -23.384 9.756 26.366 hybrid contribution -0.087 0.350 0.084 0.370 sum -7.380 -23.034 9.840 26.112 Atomic orbital electron populations 1.69754 1.07286 1.28837 1.38002 1.25887 0.94955 1.01181 0.92555 0.86239 0.79787 0.80084 0.79767 1.19045 1.20430 1.19102 1.19470 0.94717 0.90227 1.44757 0.90627 1.17733 0.92300 0.92014 0.88222 1.20803 1.01235 0.94978 1.05584 1.20396 0.92755 0.97867 0.99496 1.17271 0.94251 0.85816 1.11738 1.42944 1.48657 1.21269 1.16159 1.20188 0.83300 0.84954 0.82434 1.90695 1.39372 1.71154 1.40082 1.21416 1.02342 0.95818 0.98073 1.22576 0.95370 0.84587 0.98077 1.86245 1.62662 1.36855 1.33509 1.19017 0.91391 0.89632 0.85305 1.21462 1.03213 1.03740 0.95284 1.21199 0.96191 0.93346 0.95953 1.20979 0.99595 0.98271 1.00165 1.21093 0.96431 0.97871 0.91478 1.19251 1.04488 0.97723 0.97321 1.18014 0.79941 0.80514 0.86580 1.43749 1.47687 1.27606 1.23245 1.90889 1.65140 1.56136 1.27276 1.20329 0.98389 0.93134 1.02144 1.21197 0.97279 0.95557 1.02105 0.91067 0.88590 0.87473 0.76823 0.87902 0.87791 0.90742 0.90788 0.84116 0.85104 0.85275 0.85179 0.77372 0.76557 0.89012 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.19 10.59 55.55 0.59 -20.60 16 2 C 0.07 1.76 5.42 -17.33 -0.09 1.67 16 3 Si 0.92 19.06 29.56 -169.99 -5.03 14.04 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.33 9.02 -37.85 -0.34 -12.67 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.52 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 10 C -0.21 -5.23 9.74 -39.26 -0.38 -5.61 16 11 C -0.09 -2.04 8.61 -39.79 -0.34 -2.38 16 12 C 0.00 0.03 6.31 -83.57 -0.53 -0.50 16 13 N -0.65 -11.28 5.30 -9.74 -0.05 -11.33 16 14 C 0.50 8.55 7.66 -10.99 -0.08 8.47 16 15 O -0.54 -11.04 13.40 5.55 0.07 -10.97 16 16 C -0.14 -1.73 6.07 -27.88 -0.17 -1.90 16 17 C 0.07 0.89 4.03 37.16 0.15 1.04 16 18 O -0.28 -3.86 8.21 -40.54 -0.33 -4.19 16 19 C 0.20 2.34 6.70 -38.69 -0.26 2.08 16 20 C -0.22 -2.20 9.03 -39.48 -0.36 -2.56 16 21 C -0.05 -0.38 10.03 -39.54 -0.40 -0.77 16 22 C -0.17 -1.12 10.02 -39.63 -0.40 -1.51 16 23 C -0.05 -0.34 9.54 -39.20 -0.37 -0.71 16 24 C -0.18 -1.89 5.89 -104.85 -0.62 -2.50 16 25 C 0.56 6.20 8.04 -12.47 -0.10 6.10 16 26 N -0.86 -5.12 8.82 30.46 0.27 -4.85 16 27 O -0.52 -8.00 16.00 -16.60 -0.27 -8.27 16 28 C -0.12 -2.74 9.90 -39.79 -0.39 -3.13 16 29 C -0.14 -3.65 8.62 -39.26 -0.34 -3.98 16 30 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 31 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.11 2.51 6.22 -52.49 -0.33 2.18 16 33 H 0.40 5.44 8.82 -40.82 -0.36 5.08 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.96 7.62 -51.93 -0.40 0.57 16 37 H 0.07 0.93 7.62 -51.93 -0.40 0.53 16 38 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.13 0.40 6.40 -52.49 -0.34 0.06 16 42 H 0.40 1.07 6.86 -40.82 -0.28 0.79 16 43 H 0.40 1.96 8.93 -40.82 -0.36 1.59 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -34.73 382.94 -9.78 -44.51 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.19 Total: 12.69 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -5.62 Total: -16.81 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.81 Total: -36.78 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.52 Total: -23.42 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.73 -9.78 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.994 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds