Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39707 * 120.19588 * 117.23709 * 3 2 1 5 5 C 1.37818 * 119.90855 * 179.97438 * 4 3 2 6 6 C 1.38530 * 120.30152 * 0.02562 * 5 4 3 7 7 C 1.38095 * 120.39711 * 359.97438 * 6 5 4 8 8 C 1.38688 * 120.08292 * 0.02562 * 7 6 5 9 9 O 1.35679 * 120.14821 * 180.02562 * 8 7 6 10 10 C 1.36023 * 118.00164 * 261.78895 * 9 8 7 11 11 C 1.38674 * 119.98970 * 5.70722 * 10 9 8 12 12 C 1.38124 * 120.03775 * 179.72260 * 11 10 9 13 13 C 1.38884 * 120.02131 * 0.55023 * 12 11 10 14 14 N 1.39896 * 120.00395 * 179.70313 * 13 12 11 15 15 C 1.46504 * 120.00391 * 0.02562 * 14 13 12 16 16 C 1.50699 * 109.47311 * 179.97438 * 15 14 13 17 17 O 1.21300 * 119.99897 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00357 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00563 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99357 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00455 * 179.97438 * 19 18 16 22 22 N 1.31421 * 119.99714 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00404 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47131 * 89.99865 * 23 21 19 25 25 H 1.48500 * 109.47393 * 210.00427 * 23 21 19 26 26 H 1.48501 * 109.46961 * 330.00209 * 23 21 19 27 27 C 1.38850 * 119.98317 * 359.72256 * 13 12 11 28 28 C 1.38282 * 119.96145 * 0.02562 * 27 13 12 29 29 F 1.35097 * 120.00893 * 179.97438 * 28 27 13 30 30 H 1.08007 * 120.04921 * 359.95439 * 4 3 2 31 31 H 1.08002 * 119.85372 * 179.72445 * 5 4 3 32 32 H 1.07995 * 119.80680 * 179.97438 * 6 5 4 33 33 H 1.07999 * 119.95798 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.97589 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.98612 * 180.25195 * 12 11 10 36 36 H 0.97005 * 119.99725 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.47175 * 300.00505 * 15 14 13 38 38 H 1.09002 * 109.46786 * 60.00836 * 15 14 13 39 39 H 0.97002 * 119.99691 * 0.02562 * 18 16 15 40 40 H 0.97001 * 119.99401 * 179.97438 * 22 21 19 41 41 H 1.08003 * 120.01893 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.5536 -1.0736 5 6 4.6486 0.5515 -1.0672 6 6 5.3418 0.0028 -0.0007 7 6 4.6602 -0.5471 1.0670 8 6 3.2733 -0.5536 1.0774 9 8 2.6023 -1.0931 2.1260 10 6 2.1383 -2.3656 2.0007 11 6 2.4573 -3.1122 0.8765 12 6 1.9914 -4.4064 0.7509 13 6 1.1936 -4.9573 1.7453 14 7 0.7168 -6.2660 1.6149 15 6 1.0595 -7.0558 0.4295 16 6 0.4265 -8.4194 0.5341 17 8 -0.2454 -8.7034 1.5033 18 7 0.6068 -9.3233 -0.4491 19 6 0.0305 -10.5637 -0.3542 20 1 -0.5684 -10.8162 0.5083 21 6 0.2160 -11.4954 -1.3681 22 7 0.9443 -11.1879 -2.4179 23 14 -0.5687 -13.1856 -1.2385 24 1 -1.9194 -13.1529 -1.8548 25 1 0.2758 -14.1793 -1.9490 26 1 -0.6863 -13.5684 0.1915 27 6 0.8689 -4.2086 2.8687 28 6 1.3400 -2.9147 2.9962 29 9 1.0243 -2.1853 4.0885 30 1 2.7342 0.9818 -1.9077 31 1 5.1907 0.9752 -1.8997 32 1 6.4217 0.0051 -0.0042 33 1 5.2077 -0.9725 1.8950 34 1 3.0738 -2.6827 0.1006 35 1 2.2438 -4.9885 -0.1231 36 1 0.1592 -6.6505 2.3093 37 1 0.6901 -6.5507 -0.4629 38 1 2.1424 -7.1625 0.3647 39 1 1.1444 -9.0963 -1.2239 40 1 1.0741 -11.8385 -3.1256 41 1 0.2488 -4.6365 3.6426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079020578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -18.370860 kcal Electronic energy + Delta-G solvation = -29071.821724 eV Core-core repulsion = 24639.281741 eV Total energy + Delta-G solvation = -4432.539983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.112 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.84471 -41.25904 -39.41146 -38.54761 -37.77839 -36.65932 -34.79149 -33.94586 -31.89336 -31.47837 -31.06103 -30.79923 -29.05567 -26.73608 -24.62045 -24.43645 -23.85592 -22.56728 -21.67873 -19.68211 -19.58615 -18.64367 -18.25015 -17.95762 -16.86241 -16.80298 -16.41954 -16.00294 -15.61387 -15.30585 -15.12920 -14.86117 -14.74253 -14.57985 -14.49990 -14.34756 -13.83122 -13.76091 -13.72011 -13.49344 -13.13079 -12.97541 -12.88691 -12.64552 -12.40593 -12.32005 -12.13615 -11.95172 -11.67241 -11.47130 -11.33250 -11.16317 -10.50522 -10.36961 -9.72799 -9.66569 -9.57148 -9.29147 -8.92223 -8.70914 -8.17010 -7.23422 -6.58114 -4.00024 0.15553 0.60093 1.06999 1.34626 2.40203 2.50552 2.83530 3.07360 3.18307 3.22868 3.38796 3.44561 3.47665 3.55806 3.66874 4.06300 4.19619 4.28617 4.41974 4.63820 4.70147 4.73395 4.77693 4.80851 5.00640 5.09785 5.11719 5.25344 5.37004 5.57052 5.61534 5.64778 5.67455 5.77687 5.80394 5.83665 6.00841 6.05977 6.08790 6.17821 6.51798 7.17535 7.22416 7.34189 7.40360 7.83572 7.92160 8.38250 8.98659 9.31695 9.79757 10.58774 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.001996 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.087647 B =14025.264944 C =15000.204077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.247 3.753 3 C -0.041 4.041 4 C -0.059 4.059 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.125 4.125 8 C 0.138 3.862 9 O -0.256 6.256 10 C 0.008 3.992 11 C -0.110 4.110 12 C -0.177 4.177 13 C 0.237 3.763 14 N -0.717 5.717 15 C 0.111 3.889 16 C 0.428 3.572 17 O -0.594 6.594 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.268 1.268 27 C -0.206 4.206 28 C 0.136 3.864 29 F -0.132 7.132 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.414 0.586 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.395 0.605 40 H 0.274 0.726 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.574 23.172 1.003 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.069 4.069 3 C -0.045 4.045 4 C -0.080 4.080 5 C -0.139 4.139 6 C -0.095 4.095 7 C -0.143 4.143 8 C 0.093 3.907 9 O -0.169 6.169 10 C -0.036 4.036 11 C -0.129 4.129 12 C -0.200 4.200 13 C 0.130 3.870 14 N -0.347 5.347 15 C -0.017 4.017 16 C 0.213 3.787 17 O -0.480 6.480 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.536 5.536 23 Si 0.759 3.241 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.230 4.230 28 C 0.115 3.885 29 F -0.110 7.110 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.229 0.771 40 H 0.084 0.916 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.398 22.825 1.502 25.126 hybrid contribution 0.182 -0.765 -0.217 0.816 sum 10.580 22.060 1.285 24.499 Atomic orbital electron populations 1.81259 1.11820 1.07246 1.06790 1.25387 0.92455 0.94612 0.94400 1.16485 0.85150 1.06120 0.96760 1.21161 0.94432 0.96283 0.96092 1.21206 0.93474 0.99944 0.99274 1.21337 1.00865 0.94923 0.92405 1.21386 0.92011 1.00965 0.99934 1.18667 0.90402 0.95372 0.86306 1.84287 1.69806 1.26350 1.36445 1.18646 1.03227 0.84314 0.97389 1.20853 1.01119 0.94585 0.96376 1.20560 1.03117 0.95777 1.00529 1.17500 0.91913 0.85105 0.92505 1.44567 1.55902 1.10270 1.23985 1.21004 1.00117 0.91999 0.88623 1.19682 0.87007 0.86288 0.85697 1.90518 1.44726 1.79565 1.33222 1.41791 1.45109 1.12460 1.19050 1.19729 1.28753 0.88456 1.06496 0.87690 1.25320 0.96928 1.00409 0.95002 1.69609 1.38400 1.36693 1.08862 0.85811 0.78762 0.80723 0.78758 1.20219 1.20739 1.19287 1.20307 1.08620 0.93083 1.00960 1.16493 0.98285 0.89780 0.83895 1.91494 1.91221 1.76866 1.51450 0.84226 0.84294 0.84296 0.83819 0.84745 0.84630 0.74677 0.90413 0.90335 0.77120 0.91560 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.78 18.54 41.84 0.78 -5.00 16 2 C 0.25 2.96 14.57 -22.47 -0.33 2.63 16 3 C -0.04 -0.36 5.44 -106.69 -0.58 -0.95 16 4 C -0.06 -0.33 9.75 -39.19 -0.38 -0.71 16 5 C -0.12 -0.45 10.02 -39.63 -0.40 -0.84 16 6 C -0.08 -0.30 10.03 -39.53 -0.40 -0.70 16 7 C -0.12 -0.78 9.98 -39.47 -0.39 -1.18 16 8 C 0.14 1.28 4.06 -38.68 -0.16 1.12 16 9 O -0.26 -3.17 9.36 -3.32 -0.03 -3.20 16 10 C 0.01 0.11 6.31 -39.17 -0.25 -0.14 16 11 C -0.11 -1.28 9.10 -39.46 -0.36 -1.64 16 12 C -0.18 -2.20 9.31 -39.38 -0.37 -2.57 16 13 C 0.24 3.33 6.65 -83.71 -0.56 2.77 16 14 N -0.72 -11.23 5.71 -59.77 -0.34 -11.57 16 15 C 0.11 1.80 5.39 -5.19 -0.03 1.77 16 16 C 0.43 9.43 7.85 -10.99 -0.09 9.34 16 17 O -0.59 -15.12 15.24 5.54 0.08 -15.03 16 18 N -0.55 -13.10 5.29 -10.96 -0.06 -13.15 16 19 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 20 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 22 N -0.90 -23.25 13.05 55.50 0.72 -22.53 16 23 Si 0.93 20.24 29.55 -169.99 -5.02 15.21 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 C -0.21 -2.82 9.87 -39.34 -0.39 -3.21 16 28 C 0.14 1.92 7.31 -39.31 -0.29 1.64 16 29 F -0.13 -1.96 17.11 2.25 0.04 -1.92 16 30 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 31 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 32 H 0.14 0.20 8.06 -52.49 -0.42 -0.23 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 1.27 6.68 -52.49 -0.35 0.92 16 35 H 0.14 1.49 6.73 -52.49 -0.35 1.14 16 36 H 0.41 6.95 7.45 -40.82 -0.30 6.65 16 37 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 38 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 39 H 0.40 8.89 7.90 -40.82 -0.32 8.56 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -32.30 376.41 -7.13 -39.43 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -3.78 Total: 12.43 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -5.19 Total: -0.35 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 1.10 Total: -52.25 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.05 Total: -18.23 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.30 -7.13 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.063 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds