Wall clock time and date at job start Tue Mar 31 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35306 * 126.66186 * 2 1 4 4 C 1.42292 * 103.92226 * 180.02562 * 3 2 1 5 5 C 1.48287 * 126.94316 * 179.97438 * 4 3 2 6 6 O 1.21510 * 120.00043 * 354.39842 * 5 4 3 7 7 N 1.34779 * 120.00104 * 174.39560 * 5 4 3 8 8 C 1.46496 * 119.99858 * 5.84745 * 7 5 4 9 9 C 1.50707 * 109.47063 * 84.02839 * 8 7 5 10 10 H 1.07993 * 119.99805 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00137 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99998 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00197 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47056 * 89.99546 * 13 11 9 15 15 H 1.48496 * 109.47227 * 209.99718 * 13 11 9 16 16 H 1.48497 * 109.46901 * 329.99903 * 13 11 9 17 17 C 1.39832 * 119.99886 * 185.85399 * 7 5 4 18 18 C 1.38916 * 120.06760 * 187.80264 * 17 7 5 19 19 C 1.38090 * 119.92362 * 179.78768 * 18 17 7 20 20 C 1.38308 * 120.07152 * 0.48741 * 19 18 17 21 21 C 1.38264 * 120.14769 * 359.73977 * 20 19 18 22 22 C 1.50703 * 119.96694 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.47204 * 270.02587 * 22 21 20 24 24 F 1.39902 * 109.46740 * 30.02062 * 22 21 20 25 25 F 1.39894 * 109.47264 * 150.02161 * 22 21 20 26 26 C 1.38129 * 120.07334 * 0.02776 * 21 20 19 27 27 N 1.31006 * 106.11576 * 0.23995 * 4 3 2 28 28 O 1.20906 * 111.43257 * 359.57502 * 27 4 3 29 29 H 1.08997 * 109.47280 * 89.99763 * 1 2 3 30 30 H 1.08999 * 109.46705 * 210.00147 * 1 2 3 31 31 H 1.08998 * 109.47142 * 329.99903 * 1 2 3 32 32 H 1.07999 * 128.04038 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47489 * 204.02779 * 8 7 5 34 34 H 1.09000 * 109.47441 * 324.02611 * 8 7 5 35 35 H 0.96996 * 120.00296 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.04125 * 0.02562 * 18 17 7 37 37 H 1.07998 * 119.96657 * 180.20339 * 19 18 17 38 38 H 1.08000 * 119.92804 * 179.76632 * 20 19 18 39 39 H 1.07997 * 120.04208 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0854 0.0000 4 6 3.6272 0.5354 -0.0006 5 6 4.9073 1.2839 -0.0014 6 8 4.9031 2.4946 -0.1043 7 7 6.0755 0.6213 0.1121 8 6 6.0902 -0.8435 0.1072 9 6 6.0882 -1.3412 -1.3153 10 1 6.0766 -0.6368 -2.1338 11 6 6.1000 -2.6958 -1.5718 12 7 6.1135 -3.5537 -0.5750 13 14 6.0967 -3.3127 -3.3350 14 1 7.4959 -3.4625 -3.8095 15 1 5.4092 -4.6274 -3.3982 16 1 5.3827 -2.3385 -4.1988 17 6 7.2734 1.3322 0.2345 18 6 8.4888 0.6610 0.1886 19 6 9.6702 1.3665 0.3055 20 6 9.6438 2.7385 0.4782 21 6 8.4357 3.4090 0.5290 22 6 8.4118 4.9041 0.7168 23 9 8.3685 5.2019 2.0830 24 9 9.5641 5.4631 0.1539 25 9 7.2807 5.4350 0.0877 26 6 7.2505 2.7099 0.4080 27 7 3.4761 -0.7659 -0.0062 28 8 2.3073 -1.0750 -0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 2.0300 2.1271 0.0004 33 1 6.9863 -1.1997 0.6154 34 1 5.2065 -1.2175 0.6242 35 1 6.1222 -4.5067 -0.7554 36 1 8.5100 -0.4108 0.0579 37 1 10.6155 0.8459 0.2666 38 1 10.5690 3.2875 0.5731 39 1 6.3071 3.2341 0.4473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079308221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:59 Heat of formation + Delta-G solvation = -68.475992 kcal Electronic energy + Delta-G solvation = -31637.616464 eV Core-core repulsion = 26714.100140 eV Total energy + Delta-G solvation = -4923.516324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97603 -47.49557 -47.43097 -44.64478 -40.43842 -38.21203 -35.63285 -33.84127 -33.06520 -32.72255 -31.52616 -29.96293 -27.68739 -27.45361 -25.75058 -24.84099 -23.29778 -22.50966 -22.31807 -21.01464 -19.33084 -18.31310 -18.18155 -17.72041 -17.47209 -17.05585 -16.71417 -16.50345 -15.93592 -15.82698 -14.81369 -14.62015 -14.56503 -14.33592 -14.08194 -13.91878 -13.81321 -13.60724 -13.60038 -13.57940 -13.28705 -13.22017 -13.13120 -12.75561 -12.50194 -12.46075 -12.30999 -11.92357 -11.57780 -11.18809 -11.02426 -10.98628 -10.47100 -10.33529 -10.22864 -10.07406 -9.37691 -9.32041 -9.08442 -8.88563 -8.58123 -7.53064 -6.23663 -4.29621 1.15788 1.42898 1.75257 2.04215 2.84471 3.14622 3.19197 3.26418 3.30132 3.39040 3.45641 3.92139 3.97482 4.23441 4.28133 4.40118 4.64094 4.71075 5.10006 5.12423 5.19128 5.27013 5.36081 5.38389 5.43152 5.53337 5.66507 5.68039 5.72633 5.84817 6.01709 6.16927 6.42192 6.43824 6.58176 6.65700 6.92836 7.14009 7.42705 7.64463 7.80226 7.91305 8.31393 8.60824 8.73341 9.35958 10.84154 Molecular weight = 354.10amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.004046 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.378350 B = 6918.754416 C = 9124.892051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.057 4.057 3 C -0.185 4.185 4 C -0.037 4.037 5 C 0.602 3.398 6 O -0.528 6.528 7 N -0.522 5.522 8 C 0.217 3.783 9 C -0.532 4.532 10 H 0.057 0.943 11 C 0.076 3.924 12 N -0.883 5.883 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.275 1.275 17 C 0.170 3.830 18 C -0.111 4.111 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.170 4.170 22 C 0.511 3.489 23 F -0.181 7.181 24 F -0.182 7.182 25 F -0.175 7.175 26 C -0.126 4.126 27 N -0.259 5.259 28 O 0.124 5.876 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.266 0.734 36 H 0.150 0.850 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 9.006 3.849 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.195 4.195 5 C 0.391 3.609 6 O -0.407 6.407 7 N -0.240 5.240 8 C 0.099 3.901 9 C -0.570 4.570 10 H 0.075 0.925 11 C -0.128 4.128 12 N -0.520 5.520 13 Si 0.722 3.278 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.200 1.200 17 C 0.074 3.926 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.172 4.172 22 C 0.457 3.543 23 F -0.162 7.162 24 F -0.163 7.163 25 F -0.156 7.156 26 C -0.146 4.146 27 N 0.044 4.956 28 O 0.044 5.956 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.388 8.406 3.836 9.543 hybrid contribution -0.169 0.413 -1.093 1.181 sum -2.557 8.819 2.742 9.583 Atomic orbital electron populations 1.20269 0.84181 1.04327 1.03875 1.24412 0.96396 0.86130 1.04960 1.22280 0.89868 1.01032 1.07573 1.23082 0.95577 0.90479 1.10381 1.17058 0.82052 0.85565 0.76223 1.90439 1.86228 1.13275 1.50723 1.45955 1.02999 1.11016 1.64039 1.20226 1.00677 0.69745 0.99483 1.21158 1.52892 0.91963 0.90984 0.92470 1.24786 0.94380 0.96335 0.97339 1.69905 1.48915 1.02416 1.30789 0.86545 0.78318 0.78342 0.84593 1.20432 1.20865 1.19960 1.17833 0.86347 0.90612 0.97852 1.21408 0.90377 1.02021 0.99284 1.20884 0.98044 0.93107 0.99962 1.20776 0.96224 0.94996 1.00866 1.19757 0.96189 0.90531 1.10752 1.18312 0.73362 0.88853 0.73782 1.93195 1.96118 1.94573 1.32336 1.93156 1.50567 1.87376 1.85210 1.93202 1.51873 1.88220 1.82285 1.22196 1.00046 0.93617 0.98763 1.74953 0.94750 1.14508 1.11341 1.84959 1.11881 1.33551 1.65252 0.89682 0.89919 0.89332 0.80825 0.93579 0.90729 0.92441 0.83243 0.84850 0.85442 0.79991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.45 36.01 0.38 -0.18 16 2 C -0.06 -0.77 7.47 -35.35 -0.26 -1.04 16 3 C -0.19 -2.86 10.93 -39.07 -0.43 -3.29 16 4 C -0.04 -0.73 6.89 -82.53 -0.57 -1.30 16 5 C 0.60 12.87 7.55 -12.13 -0.09 12.78 16 6 O -0.53 -11.32 13.47 5.36 0.07 -11.25 16 7 N -0.52 -11.37 2.70 -115.64 -0.31 -11.68 16 8 C 0.22 5.14 4.21 -5.19 -0.02 5.12 16 9 C -0.53 -13.73 8.70 -34.44 -0.30 -14.03 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.08 1.97 5.46 -17.82 -0.10 1.88 16 12 N -0.88 -23.74 13.29 55.43 0.74 -23.00 16 13 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.17 3.39 6.48 -83.72 -0.54 2.85 16 18 C -0.11 -1.99 9.15 -39.38 -0.36 -2.35 16 19 C -0.10 -1.50 10.04 -39.61 -0.40 -1.89 16 20 C -0.11 -1.59 9.40 -39.55 -0.37 -1.96 16 21 C -0.17 -2.80 5.45 -104.65 -0.57 -3.37 16 22 C 0.51 7.82 3.36 36.01 0.12 7.94 16 23 F -0.18 -2.71 17.30 2.25 0.04 -2.68 16 24 F -0.18 -2.59 16.46 2.25 0.04 -2.55 16 25 F -0.17 -2.85 16.46 2.25 0.04 -2.81 16 26 C -0.13 -2.38 8.32 -39.39 -0.33 -2.71 16 27 N -0.26 -5.42 8.16 33.29 0.27 -5.14 16 28 O 0.12 2.18 11.18 17.25 0.19 2.38 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.05 1.11 6.22 -51.93 -0.32 0.79 16 34 H 0.08 1.87 5.22 -51.93 -0.27 1.59 16 35 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.15 2.83 6.25 -52.49 -0.33 2.50 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 1.52 7.60 -52.49 -0.40 1.12 16 39 H 0.18 3.65 4.28 -55.12 -0.24 3.42 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -29.26 349.94 -5.73 -34.99 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.22 Total: 2.41 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.84 Total: -1.56 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.70 Total: -39.83 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.26 Total: -8.87 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.11 Total: -8.04 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.26 -5.73 -34.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079308221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.487 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds