Wall clock time and date at job start Tue Mar 31 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 119.55677 * 2 1 4 4 C 1.38536 * 119.22450 * 179.97438 * 3 2 1 5 5 C 1.39147 * 118.37217 * 359.97438 * 4 3 2 6 6 O 1.35907 * 120.47485 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00189 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47622 * 180.02562 * 7 6 5 9 9 C 1.38380 * 119.92980 * 270.03223 * 8 7 6 10 10 C 1.38339 * 120.29401 * 179.97438 * 9 8 7 11 11 C 1.37980 * 120.14372 * 359.73915 * 10 9 8 12 12 C 1.39564 * 119.85249 * 0.48740 * 11 10 9 13 13 C 1.47843 * 120.14310 * 179.78820 * 12 11 10 14 14 O 1.21552 * 119.99946 * 200.28062 * 13 12 11 15 15 N 1.34780 * 120.00215 * 20.28708 * 13 12 11 16 16 C 1.46499 * 119.99762 * 6.98965 * 15 13 12 17 17 C 1.46500 * 119.99961 * 186.98886 * 15 13 12 18 18 H 1.09003 * 109.46841 * 0.02562 * 17 15 13 19 19 C 1.53005 * 109.46593 * 119.99674 * 17 15 13 20 20 C 1.50695 * 109.47117 * 239.99742 * 17 15 13 21 21 H 1.07996 * 120.00067 * 0.02562 * 20 17 15 22 22 C 1.37883 * 119.99878 * 179.97438 * 20 17 15 23 23 N 1.31519 * 119.99631 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00109 * 180.02562 * 22 20 17 25 25 H 1.48492 * 109.47322 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47343 * 300.00446 * 24 22 20 27 27 H 1.48506 * 109.46848 * 60.00577 * 24 22 20 28 28 C 1.37940 * 119.92711 * 90.00028 * 8 7 6 29 29 C 1.38712 * 119.04991 * 0.28062 * 5 4 3 30 30 N 1.31839 * 120.68411 * 359.42843 * 29 5 4 31 31 H 1.09001 * 109.46832 * 90.00485 * 1 2 3 32 32 H 1.08995 * 109.47041 * 210.00494 * 1 2 3 33 33 H 1.09008 * 109.46946 * 330.00721 * 1 2 3 34 34 H 1.08001 * 120.39445 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.82038 * 180.02562 * 4 3 2 36 36 H 1.09003 * 109.46755 * 60.00543 * 7 6 5 37 37 H 1.09002 * 109.47515 * 300.00632 * 7 6 5 38 38 H 1.07995 * 119.85466 * 0.02562 * 9 8 7 39 39 H 1.07993 * 119.92895 * 179.97438 * 10 9 8 40 40 H 1.08000 * 120.07850 * 180.25438 * 11 10 9 41 41 H 1.09003 * 109.47061 * 265.98246 * 16 15 13 42 42 H 1.09000 * 109.47134 * 25.98359 * 16 15 13 43 43 H 1.08999 * 109.46926 * 145.97904 * 16 15 13 44 44 H 1.08992 * 109.47455 * 299.99760 * 19 17 15 45 45 H 1.09003 * 109.47006 * 60.00739 * 19 17 15 46 46 H 1.09005 * 109.46718 * 179.97438 * 19 17 15 47 47 H 0.97002 * 119.99307 * 179.97438 * 23 22 20 48 48 H 1.08000 * 120.06924 * 0.02957 * 28 8 7 49 49 H 1.07998 * 119.65268 * 179.72602 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.2026 0.0000 4 6 3.5744 1.1946 0.0005 5 6 4.2285 -0.0335 0.0016 6 8 5.5863 -0.0913 0.0027 7 6 6.1804 -1.3909 0.0043 8 6 7.6814 -1.2572 0.0060 9 6 8.3705 -1.1961 -1.1925 10 6 9.7483 -1.0728 -1.1998 11 6 10.4442 -1.0045 -0.0102 12 6 9.7558 -1.0703 1.2020 13 6 10.4954 -1.0025 2.4804 14 8 9.9834 -1.4181 3.5015 15 7 11.7372 -0.4798 2.5136 16 6 12.2950 0.1594 1.3192 17 6 12.5292 -0.5508 3.7440 18 1 11.9531 -1.0578 4.5181 19 6 13.8187 -1.3295 3.4762 20 6 12.8704 0.8435 4.2030 21 1 12.5309 1.6971 3.6352 22 6 13.6151 1.0293 5.3484 23 7 14.0281 -0.0103 6.0401 24 14 14.0374 2.7575 5.9177 25 1 14.8392 2.6856 7.1655 26 1 14.8226 3.4481 4.8633 27 1 12.7855 3.5129 6.1774 28 6 8.3655 -1.1952 1.2022 29 6 3.4748 -1.1981 -0.0038 30 7 2.1574 -1.1469 0.0014 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8901 0.5138 34 1 1.6482 2.1375 -0.0004 35 1 4.1330 2.1188 0.0010 36 1 5.8649 -1.9357 -0.8855 37 1 5.8634 -1.9343 0.8945 38 1 7.8301 -1.2440 -2.1263 39 1 10.2802 -1.0261 -2.1385 40 1 11.5195 -0.9042 -0.0172 41 1 12.8812 -0.5682 0.7579 42 1 11.4836 0.5323 0.6942 43 1 12.9353 0.9898 1.6170 44 1 13.5720 -2.3379 3.1443 45 1 14.3950 -0.8228 2.7020 46 1 14.4082 -1.3820 4.3916 47 1 14.5523 0.1205 6.8457 48 1 7.8265 -1.2430 2.1369 49 1 3.9725 -2.1565 -0.0076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079310159.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:21 Heat of formation + Delta-G solvation = 11.335979 kcal Electronic energy + Delta-G solvation = -29933.700564 eV Core-core repulsion = 25827.168077 eV Total energy + Delta-G solvation = -4106.532488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.00199 -40.13621 -38.79313 -37.80786 -35.49737 -33.49833 -32.78403 -32.60013 -31.73701 -31.11278 -29.27698 -27.53154 -26.95065 -26.25597 -25.25441 -23.81475 -23.76073 -22.32687 -21.69811 -20.86527 -18.85598 -18.55665 -17.36610 -16.69962 -16.45626 -16.39119 -16.16973 -16.07434 -15.47046 -14.97921 -14.72765 -14.65505 -14.50820 -14.26831 -14.06166 -13.77272 -13.42643 -13.09793 -12.96724 -12.74431 -12.73066 -12.58777 -12.54131 -12.40073 -12.18117 -11.84340 -11.63857 -11.53821 -11.26969 -11.08921 -10.91519 -10.80240 -10.58998 -10.30499 -10.17632 -10.03118 -9.77066 -9.26364 -9.10098 -8.97552 -8.82555 -8.60865 -8.44881 -7.65496 -6.09212 -4.17198 0.77826 0.91399 0.96414 1.20102 2.79454 3.26886 3.32093 3.32543 3.36507 3.42463 3.81704 4.01943 4.06805 4.31720 4.36521 4.38337 4.49176 4.58405 4.67723 4.81658 4.90554 4.94257 5.06117 5.11704 5.17945 5.22262 5.22977 5.26766 5.27611 5.47223 5.53496 5.63629 5.72497 5.77786 5.79837 5.84752 5.91655 6.20766 6.26767 6.30894 6.35043 6.38574 6.71049 6.76660 6.82779 6.93526 7.01426 7.36679 7.49211 7.64940 7.68323 7.97891 8.16320 8.45089 8.79276 8.97417 9.48945 10.96139 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.001966 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.319536 B =14235.131407 C =15316.473167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.083 3.917 3 C -0.130 4.130 4 C -0.106 4.106 5 C 0.079 3.921 6 O -0.301 6.301 7 C 0.103 3.897 8 C -0.114 4.114 9 C -0.080 4.080 10 C -0.135 4.135 11 C -0.097 4.097 12 C -0.122 4.122 13 C 0.543 3.457 14 O -0.546 6.546 15 N -0.584 5.584 16 C 0.070 3.930 17 C 0.258 3.742 18 H 0.064 0.936 19 C -0.146 4.146 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.277 1.277 27 H -0.277 1.277 28 C -0.039 4.039 29 C 0.020 3.980 30 N -0.451 5.451 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.156 0.844 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.011 0.989 45 H 0.030 0.970 46 H 0.095 0.905 47 H 0.264 0.736 48 H 0.134 0.866 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.416 -0.451 -18.420 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.056 4.056 3 C -0.150 4.150 4 C -0.132 4.132 5 C 0.031 3.969 6 O -0.213 6.213 7 C 0.028 3.972 8 C -0.114 4.114 9 C -0.098 4.098 10 C -0.153 4.153 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.330 3.670 14 O -0.425 6.425 15 N -0.314 5.314 16 C -0.073 4.073 17 C 0.158 3.842 18 H 0.082 0.918 19 C -0.205 4.205 20 C -0.565 4.565 21 H 0.078 0.922 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.727 3.273 25 H -0.212 1.212 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.058 4.058 29 C -0.138 4.138 30 N -0.161 5.161 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.030 0.970 45 H 0.049 0.951 46 H 0.113 0.887 47 H 0.074 0.926 48 H 0.152 0.848 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.831 -1.331 -17.666 25.855 hybrid contribution 0.909 1.575 0.259 1.837 sum -17.922 0.244 -17.407 24.986 Atomic orbital electron populations 1.20633 0.88672 1.03383 1.02873 1.21202 0.97182 0.88205 0.98984 1.21833 0.93539 0.99542 1.00110 1.20988 0.94055 0.96767 1.01433 1.20086 0.83849 0.95331 0.97629 1.86208 1.15866 1.31234 1.88024 1.21648 0.89924 0.83109 1.02476 1.19257 0.92868 1.05632 0.93651 1.21153 0.94571 0.96987 0.97086 1.21109 0.94005 1.01940 0.98206 1.22510 1.02451 0.94981 0.91512 1.20256 0.94181 1.03770 0.94273 1.18223 0.81910 0.79251 0.87628 1.90732 1.67545 1.49665 1.34588 1.48137 1.14424 1.54450 1.14402 1.22205 0.98993 0.98091 0.88044 1.18990 0.88062 0.96652 0.80521 0.91800 1.22096 1.00002 0.95753 1.02635 1.21255 1.33915 0.91714 1.09619 0.92250 1.24896 0.95555 0.97223 0.96108 1.69869 1.36687 1.29221 1.16765 0.86536 0.78439 0.84269 0.78033 1.21155 1.20221 1.20233 1.21159 0.93110 0.93647 0.97903 1.22916 0.90129 0.97536 1.03220 1.67355 1.08860 1.29552 1.10324 0.90694 0.90613 0.90816 0.84119 0.83851 0.90759 0.90574 0.85831 0.85301 0.82715 0.93170 0.91286 0.90126 0.96967 0.95080 0.88694 0.92593 0.84767 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.17 36.01 0.37 -0.24 16 2 C 0.08 0.77 6.78 -82.58 -0.56 0.21 16 3 C -0.13 -1.07 9.73 -39.47 -0.38 -1.45 16 4 C -0.11 -1.01 10.13 -39.13 -0.40 -1.40 16 5 C 0.08 0.85 6.71 -39.07 -0.26 0.59 16 6 O -0.30 -3.48 10.13 -19.45 -0.20 -3.68 16 7 C 0.10 1.01 4.87 36.00 0.18 1.18 16 8 C -0.11 -1.35 5.50 -104.68 -0.58 -1.93 16 9 C -0.08 -0.82 9.69 -39.49 -0.38 -1.21 16 10 C -0.13 -1.42 10.03 -39.64 -0.40 -1.81 16 11 C -0.10 -1.27 7.61 -39.18 -0.30 -1.56 16 12 C -0.12 -2.01 5.57 -104.97 -0.58 -2.59 16 13 C 0.54 11.61 7.52 -12.33 -0.09 11.51 16 14 O -0.55 -13.80 15.88 5.32 0.08 -13.72 16 15 N -0.58 -12.50 2.75 -176.38 -0.49 -12.98 16 16 C 0.07 1.15 7.68 59.85 0.46 1.61 16 17 C 0.26 6.57 2.63 -69.08 -0.18 6.39 16 18 H 0.06 1.89 6.92 -51.93 -0.36 1.54 16 19 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 20 C -0.53 -14.19 8.02 -34.44 -0.28 -14.47 16 21 H 0.06 1.58 7.27 -52.49 -0.38 1.19 16 22 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 24 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C -0.04 -0.59 9.24 -39.19 -0.36 -0.95 16 29 C 0.02 0.21 10.22 -17.37 -0.18 0.03 16 30 N -0.45 -5.03 10.27 -9.35 -0.10 -5.12 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.32 8.08 -51.92 -0.42 -0.10 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.07 0.55 7.61 -51.93 -0.40 0.15 16 37 H 0.08 0.69 7.63 -51.93 -0.40 0.29 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.16 1.87 4.04 -52.49 -0.21 1.65 16 41 H 0.05 0.70 7.02 -51.93 -0.36 0.34 16 42 H 0.07 0.97 5.22 -51.93 -0.27 0.70 16 43 H 0.08 1.41 6.97 -51.93 -0.36 1.05 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 46 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.13 2.10 7.79 -52.49 -0.41 1.69 16 49 H 0.16 1.32 6.32 -52.49 -0.33 0.99 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -33.50 401.18 -9.44 -42.95 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.71 Total: 2.43 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -3.69 Total: -7.56 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.05 Total: -42.48 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.11 Total: -17.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.50 -9.44 -42.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079310159.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.283 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds