Wall clock time and date at job start Tue Mar 31 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38248 * 119.55958 * 2 1 4 4 C 1.38533 * 119.22253 * 179.97438 * 3 2 1 5 5 C 1.39139 * 118.37209 * 0.02562 * 4 3 2 6 6 O 1.35913 * 120.46883 * 179.97438 * 5 4 3 7 7 C 1.42905 * 116.99739 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47177 * 180.02562 * 7 6 5 9 9 C 1.38378 * 119.92804 * 270.01847 * 8 7 6 10 10 C 1.38333 * 120.29553 * 179.97438 * 9 8 7 11 11 C 1.37982 * 120.14330 * 359.74990 * 10 9 8 12 12 C 1.39552 * 119.85159 * 0.48095 * 11 10 9 13 13 C 1.47845 * 120.14717 * 179.79061 * 12 11 10 14 14 O 1.21555 * 120.00194 * 140.33817 * 13 12 11 15 15 N 1.34783 * 119.99680 * 320.34418 * 13 12 11 16 16 C 1.46494 * 120.00131 * 4.34966 * 15 13 12 17 17 C 1.46502 * 119.99634 * 184.34932 * 15 13 12 18 18 H 1.09000 * 109.47381 * 359.97438 * 17 15 13 19 19 C 1.53003 * 109.47197 * 239.99920 * 17 15 13 20 20 C 1.50701 * 109.47079 * 120.00041 * 17 15 13 21 21 H 1.07998 * 119.99822 * 0.02562 * 20 17 15 22 22 C 1.37869 * 120.00072 * 179.97438 * 20 17 15 23 23 N 1.31514 * 120.00084 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 120.00140 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.47252 * 89.99894 * 24 22 20 26 26 H 1.48500 * 109.47433 * 210.00123 * 24 22 20 27 27 H 1.48506 * 109.47012 * 330.00385 * 24 22 20 28 28 C 1.37936 * 119.92786 * 89.99640 * 8 7 6 29 29 C 1.38701 * 119.05707 * 0.26967 * 5 4 3 30 30 N 1.31842 * 120.68084 * 359.43369 * 29 5 4 31 31 H 1.08997 * 109.46780 * 89.99721 * 1 2 3 32 32 H 1.08996 * 109.47171 * 210.00317 * 1 2 3 33 33 H 1.09004 * 109.46481 * 329.99984 * 1 2 3 34 34 H 1.08003 * 120.38730 * 359.97438 * 3 2 1 35 35 H 1.08006 * 120.81229 * 180.02562 * 4 3 2 36 36 H 1.08995 * 109.47282 * 59.99600 * 7 6 5 37 37 H 1.09009 * 109.46994 * 299.99570 * 7 6 5 38 38 H 1.07999 * 119.85000 * 0.02699 * 9 8 7 39 39 H 1.08001 * 119.93226 * 179.97438 * 10 9 8 40 40 H 1.08004 * 120.07451 * 180.24916 * 11 10 9 41 41 H 1.09008 * 109.46865 * 91.64995 * 16 15 13 42 42 H 1.08994 * 109.47341 * 331.65355 * 16 15 13 43 43 H 1.08998 * 109.46964 * 211.64783 * 16 15 13 44 44 H 1.08996 * 109.47112 * 300.00591 * 19 17 15 45 45 H 1.09000 * 109.46765 * 60.00473 * 19 17 15 46 46 H 1.09001 * 109.47321 * 180.02562 * 19 17 15 47 47 H 0.97009 * 119.99947 * 179.97438 * 23 22 20 48 48 H 1.08004 * 120.07351 * 0.02562 * 28 8 7 49 49 H 1.07992 * 119.66277 * 179.72719 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1891 1.2025 0.0000 4 6 3.5744 1.1944 0.0005 5 6 4.2284 -0.0337 0.0005 6 8 5.5863 -0.0914 0.0005 7 6 6.1803 -1.3912 0.0011 8 6 7.6814 -1.2574 0.0016 9 6 8.3695 -1.1960 -1.1974 10 6 9.7473 -1.0727 -1.2058 11 6 10.4441 -1.0049 -0.0168 12 6 9.7568 -1.0711 1.1959 13 6 10.4973 -1.0038 2.4738 14 8 10.0419 -0.3730 3.4077 15 7 11.6776 -1.6417 2.6031 16 6 12.2728 -2.3218 1.4501 17 6 12.3652 -1.6549 3.8966 18 1 11.7753 -1.1015 4.6274 19 6 13.7400 -0.9995 3.7502 20 6 12.5343 -3.0785 4.3612 21 1 12.1667 -3.8920 3.7534 22 6 13.1591 -3.3423 5.5615 23 7 13.6081 -2.3517 6.3008 24 14 13.3694 -5.1070 6.1369 25 1 14.6594 -5.6420 5.6321 26 1 13.3636 -5.1477 7.6214 27 1 12.2522 -5.9344 5.6147 28 6 8.3664 -1.1960 1.1973 29 6 3.4748 -1.1982 -0.0057 30 7 2.1574 -1.1470 -0.0004 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3632 0.8901 0.5139 34 1 1.6482 2.1374 -0.0004 35 1 4.1331 2.1187 0.0010 36 1 5.8640 -1.9356 -0.8886 37 1 5.8641 -1.9348 0.8914 38 1 7.8283 -1.2438 -2.1308 39 1 10.2785 -1.0258 -2.1450 40 1 11.5195 -0.9046 -0.0246 41 1 12.9381 -1.6349 0.9268 42 1 11.4832 -2.6489 0.7738 43 1 12.8401 -3.1874 1.7920 44 1 14.3300 -1.5524 3.0193 45 1 13.6176 0.0302 3.4142 46 1 14.2518 -1.0097 4.7125 47 1 14.0474 -2.5374 7.1456 48 1 7.8282 -1.2440 2.1324 49 1 3.9723 -2.1567 -0.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079310160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:25 Heat of formation + Delta-G solvation = -2.334515 kcal Electronic energy + Delta-G solvation = -29906.612615 eV Core-core repulsion = 25799.487331 eV Total energy + Delta-G solvation = -4107.125285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99754 -40.08071 -38.78403 -37.83035 -35.42028 -33.40728 -32.78670 -32.60421 -31.75740 -31.14619 -29.24221 -27.51932 -26.83304 -26.22361 -25.25830 -23.85620 -23.76163 -22.32570 -21.74537 -20.86859 -18.78092 -18.54942 -17.34484 -16.62114 -16.47852 -16.43949 -16.16492 -16.09748 -15.50110 -15.07009 -14.74230 -14.69161 -14.47922 -14.25398 -14.00665 -13.75325 -13.39176 -13.11599 -13.03531 -12.73945 -12.61980 -12.54508 -12.51280 -12.33148 -12.24562 -11.84439 -11.63798 -11.55244 -11.33459 -11.12252 -10.97820 -10.84295 -10.72478 -10.29955 -10.19842 -10.02869 -9.76673 -9.25098 -9.13408 -8.98393 -8.82032 -8.60556 -8.45990 -7.65415 -6.10376 -4.18779 0.78173 0.94440 0.96824 1.20126 2.78956 3.24177 3.31189 3.33194 3.37415 3.42890 3.73869 3.99928 4.03734 4.32012 4.35905 4.37718 4.49272 4.58440 4.67951 4.81301 4.91574 4.93821 5.05670 5.11000 5.18239 5.20963 5.23222 5.27043 5.27887 5.46325 5.53778 5.67402 5.72797 5.77432 5.79845 5.87953 5.95166 6.21073 6.26070 6.31712 6.34503 6.38562 6.72214 6.76904 6.82776 6.93779 7.02873 7.36799 7.49199 7.65389 7.67804 7.97976 8.15181 8.45219 8.77719 8.96782 9.47689 10.94908 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.001931 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.704636 B =14495.559012 C =15350.626125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.083 3.917 3 C -0.131 4.131 4 C -0.106 4.106 5 C 0.079 3.921 6 O -0.301 6.301 7 C 0.103 3.897 8 C -0.110 4.110 9 C -0.082 4.082 10 C -0.132 4.132 11 C -0.081 4.081 12 C -0.115 4.115 13 C 0.543 3.457 14 O -0.546 6.546 15 N -0.583 5.583 16 C 0.075 3.925 17 C 0.257 3.743 18 H 0.064 0.936 19 C -0.146 4.146 20 C -0.527 4.527 21 H 0.060 0.940 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.043 4.043 29 C 0.020 3.980 30 N -0.450 5.450 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.030 0.970 45 H 0.012 0.988 46 H 0.094 0.906 47 H 0.264 0.736 48 H 0.132 0.868 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.604 4.031 -18.699 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.056 4.056 3 C -0.150 4.150 4 C -0.132 4.132 5 C 0.031 3.969 6 O -0.213 6.213 7 C 0.028 3.972 8 C -0.110 4.110 9 C -0.100 4.100 10 C -0.150 4.150 11 C -0.100 4.100 12 C -0.119 4.119 13 C 0.330 3.670 14 O -0.425 6.425 15 N -0.313 5.313 16 C -0.069 4.069 17 C 0.157 3.843 18 H 0.082 0.918 19 C -0.204 4.204 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.138 4.138 23 N -0.524 5.524 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.062 4.062 29 C -0.138 4.138 30 N -0.161 5.161 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.113 0.887 47 H 0.074 0.926 48 H 0.150 0.850 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.006 3.759 -17.984 25.725 hybrid contribution 0.842 -0.438 0.289 0.992 sum -17.164 3.321 -17.695 24.875 Atomic orbital electron populations 1.20634 0.88675 1.03383 1.02869 1.21204 0.97183 0.88209 0.98981 1.21828 0.93537 0.99533 1.00139 1.20983 0.94047 0.96759 1.01445 1.20083 0.83849 0.95332 0.97630 1.86213 1.15861 1.31197 1.88026 1.21651 0.89908 0.83127 1.02502 1.19247 0.92873 1.05294 0.93623 1.21120 0.94483 0.97319 0.97098 1.21064 0.93990 1.01825 0.98083 1.21764 1.00908 0.95862 0.91449 1.20220 0.94177 1.03102 0.94352 1.18245 0.81636 0.80360 0.86790 1.90748 1.68319 1.42690 1.40728 1.48180 1.19950 1.50136 1.13033 1.21961 0.98129 0.98007 0.88775 1.19000 0.89672 0.96986 0.78605 0.91793 1.22081 0.99449 0.95797 1.03120 1.21297 1.38433 0.91663 1.05180 0.92183 1.24896 0.95185 0.97480 0.96230 1.69883 1.38764 1.30742 1.13048 0.86480 0.78424 0.84441 0.77960 1.20588 1.21069 1.19926 1.21099 0.92846 0.94371 0.97895 1.22917 0.90134 0.97544 1.03197 1.67361 1.08861 1.29543 1.10307 0.90697 0.90610 0.90821 0.84128 0.83855 0.90718 0.90577 0.85772 0.85274 0.84407 0.93582 0.91889 0.90103 0.95121 0.96935 0.88742 0.92628 0.84979 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.17 36.01 0.37 -0.24 16 2 C 0.08 0.77 6.78 -82.57 -0.56 0.21 16 3 C -0.13 -1.06 9.73 -39.47 -0.38 -1.45 16 4 C -0.11 -1.00 10.13 -39.14 -0.40 -1.40 16 5 C 0.08 0.85 6.71 -39.08 -0.26 0.59 16 6 O -0.30 -3.49 10.13 -19.47 -0.20 -3.68 16 7 C 0.10 1.01 4.87 36.01 0.18 1.18 16 8 C -0.11 -1.31 5.50 -104.68 -0.58 -1.89 16 9 C -0.08 -0.84 9.69 -39.49 -0.38 -1.23 16 10 C -0.13 -1.38 10.03 -39.64 -0.40 -1.77 16 11 C -0.08 -1.06 7.47 -39.19 -0.29 -1.36 16 12 C -0.12 -1.90 5.22 -104.97 -0.55 -2.45 16 13 C 0.54 11.60 7.35 -12.33 -0.09 11.51 16 14 O -0.55 -13.86 16.26 5.32 0.09 -13.78 16 15 N -0.58 -12.48 2.75 -176.38 -0.49 -12.96 16 16 C 0.07 1.24 7.90 59.84 0.47 1.71 16 17 C 0.26 6.56 2.63 -69.08 -0.18 6.38 16 18 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 19 C -0.15 -3.48 8.97 37.16 0.33 -3.14 16 20 C -0.53 -14.12 8.00 -34.44 -0.28 -14.39 16 21 H 0.06 1.58 7.30 -52.49 -0.38 1.20 16 22 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -24.93 11.32 55.43 0.63 -24.31 16 24 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.04 -0.65 9.28 -39.18 -0.36 -1.01 16 29 C 0.02 0.21 10.22 -17.38 -0.18 0.03 16 30 N -0.45 -5.05 10.27 -9.35 -0.10 -5.14 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 34 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.07 0.55 7.61 -51.93 -0.40 0.16 16 37 H 0.08 0.69 7.63 -51.92 -0.40 0.29 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.14 1.66 5.54 -52.48 -0.29 1.37 16 41 H 0.05 0.66 7.27 -51.92 -0.38 0.28 16 42 H 0.06 0.89 5.38 -51.93 -0.28 0.61 16 43 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 44 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 47 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.13 2.06 8.06 -52.48 -0.42 1.63 16 49 H 0.16 1.34 6.32 -52.49 -0.33 1.00 16 LS Contribution 403.34 15.07 6.08 6.08 Total: -1.00 -33.47 403.34 -9.47 -42.94 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.83 Total: 2.05 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.64 Total: -7.06 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.05 Total: -42.41 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.11 Total: -17.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.47 -9.47 -42.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079310160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.603 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds