Wall clock time and date at job start Tue Mar 31 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29823 * 126.33400 * 2 1 4 4 O 1.41322 * 109.72250 * 179.97438 * 3 2 1 5 5 C 1.34835 * 109.42799 * 359.97438 * 4 3 2 6 6 N 1.32447 * 133.10159 * 179.97438 * 5 4 3 7 7 C 1.31562 * 122.02820 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.17384 * 179.97438 * 7 6 5 9 9 C 1.38597 * 121.65659 * 359.97438 * 7 6 5 10 10 C 1.39437 * 119.20197 * 0.28919 * 9 7 6 11 11 C 1.48001 * 121.10600 * 179.71922 * 10 9 7 12 12 O 1.21530 * 120.00276 * 236.45722 * 11 10 9 13 13 N 1.34780 * 120.00033 * 56.45082 * 11 10 9 14 14 C 1.46495 * 120.00167 * 185.57663 * 13 11 10 15 15 C 1.50700 * 109.46985 * 90.00259 * 14 13 11 16 16 H 1.08003 * 119.99925 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00141 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99993 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99863 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47407 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47159 * 120.00338 * 19 17 15 22 22 H 1.48505 * 109.47378 * 239.99834 * 19 17 15 23 23 C 1.46504 * 119.99913 * 5.58450 * 13 11 10 24 24 C 1.50692 * 109.47362 * 85.52903 * 23 13 11 25 25 C 1.34512 * 125.79102 * 89.99809 * 24 23 13 26 26 C 1.41385 * 106.84404 * 180.02562 * 25 24 23 27 27 C 1.34516 * 106.83943 * 0.02562 * 26 25 24 28 28 O 1.34304 * 108.41940 * 359.73549 * 27 26 25 29 29 C 1.40520 * 106.85840 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.46999 * 263.81514 * 1 2 3 31 31 H 1.08998 * 109.46889 * 23.81205 * 1 2 3 32 32 H 1.08995 * 109.47020 * 143.81216 * 1 2 3 33 33 H 1.09002 * 109.46902 * 270.01533 * 8 7 6 34 34 H 1.09001 * 109.46904 * 30.01034 * 8 7 6 35 35 H 1.08998 * 109.47706 * 150.01147 * 8 7 6 36 36 H 1.07999 * 120.39698 * 180.02562 * 9 7 6 37 37 H 1.08993 * 109.47520 * 210.00065 * 14 13 11 38 38 H 1.09003 * 109.47033 * 330.00787 * 14 13 11 39 39 H 0.97003 * 119.99744 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.46914 * 205.53287 * 23 13 11 41 41 H 1.09008 * 109.46721 * 325.52767 * 23 13 11 42 42 H 1.07997 * 126.58005 * 359.96962 * 25 24 23 43 43 H 1.07993 * 126.58026 * 179.97438 * 26 25 24 44 44 H 1.08002 * 125.79026 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0458 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6967 -0.7049 0.0015 6 7 4.7070 -1.5613 0.0019 7 6 4.5181 -2.8633 0.0024 8 6 5.7148 -3.7792 0.0023 9 6 3.2461 -3.4137 0.0031 10 6 2.1384 -2.5668 -0.0029 11 6 0.7613 -3.1092 -0.0087 12 8 -0.0131 -2.7917 -0.8898 13 7 0.3662 -3.9553 0.9631 14 6 -0.9534 -4.5875 0.8921 15 6 -0.8455 -5.8932 0.1475 16 1 0.1105 -6.2194 -0.2349 17 6 -1.9670 -6.6716 -0.0455 18 7 -3.1312 -6.2743 0.4198 19 14 -1.8330 -8.2905 -0.9677 20 1 -0.4243 -8.5077 -1.3844 21 1 -2.2637 -9.4019 -0.0820 22 1 -2.7044 -8.2492 -2.1695 23 6 1.2564 -4.2427 2.0907 24 6 1.0791 -3.1880 3.1522 25 6 0.2032 -3.2375 4.1718 26 6 0.3750 -2.0487 4.9177 27 6 1.3454 -1.3436 4.3089 28 8 1.7719 -2.0410 3.2433 29 6 2.3735 -1.1780 0.0010 30 1 -0.3633 -0.1107 1.0217 31 1 -0.3633 0.9402 -0.4149 32 1 -0.3633 -0.8294 -0.6067 33 1 6.0031 -4.0002 -1.0255 34 1 6.5444 -3.2932 0.5158 35 1 5.4626 -4.7067 0.5163 36 1 3.1146 -4.4857 0.0038 37 1 -1.3218 -4.7738 1.9008 38 1 -1.6450 -3.9270 0.3689 39 1 -3.9202 -6.8221 0.2843 40 1 1.0127 -5.2206 2.5058 41 1 2.2907 -4.2416 1.7464 42 1 -0.4977 -4.0323 4.3802 43 1 -0.1690 -1.7615 5.8053 44 1 1.7213 -0.3821 4.6261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079333492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:07 Heat of formation + Delta-G solvation = 71.280918 kcal Electronic energy + Delta-G solvation = -32602.591400 eV Core-core repulsion = 28297.399315 eV Total energy + Delta-G solvation = -4305.192085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.45506 -42.07103 -39.71412 -38.63633 -35.61579 -34.75154 -33.09785 -32.86473 -32.35617 -32.04844 -30.34064 -28.76057 -27.93202 -27.46699 -25.86710 -24.55242 -23.35172 -22.36319 -21.58517 -20.90267 -20.53867 -18.94004 -18.17749 -17.73030 -17.23610 -16.89072 -16.49185 -16.45746 -15.87211 -15.66321 -15.00128 -14.76579 -14.38073 -14.23842 -14.08650 -13.97143 -13.45014 -13.43782 -13.11226 -12.90285 -12.82527 -12.71658 -12.68923 -12.54572 -12.39549 -12.29875 -12.18290 -11.75082 -11.45017 -11.36202 -11.06315 -10.89387 -10.76084 -10.38859 -10.10949 -9.86109 -9.78556 -9.56353 -9.26545 -8.95507 -8.60354 -8.43907 -8.08464 -6.21277 -4.27654 0.22033 0.83611 1.77247 1.88921 2.04887 2.68159 2.81039 3.15919 3.19944 3.28863 3.30775 3.37447 3.49585 3.70203 4.02226 4.27722 4.36146 4.38973 4.55693 4.78845 4.90000 5.02267 5.05715 5.13255 5.15232 5.16734 5.35321 5.36852 5.41892 5.48924 5.59044 5.62974 5.66686 5.70478 5.80660 5.90029 6.06101 6.10269 6.18125 6.26209 6.60226 6.72572 7.02011 7.10529 7.23729 7.27596 7.53171 7.73102 7.92697 8.00446 8.47348 8.77079 9.38564 10.86832 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.004223 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.424578 B = 6628.173747 C = 7364.241015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.164 3.836 3 N -0.285 5.285 4 O -0.087 6.087 5 C 0.298 3.702 6 N -0.478 5.478 7 C 0.202 3.798 8 C -0.106 4.106 9 C -0.184 4.184 10 C 0.025 3.975 11 C 0.552 3.448 12 O -0.511 6.511 13 N -0.577 5.577 14 C 0.245 3.755 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.179 3.821 24 C -0.032 4.032 25 C -0.189 4.189 26 C -0.212 4.212 27 C -0.047 4.047 28 O -0.174 6.174 29 C -0.214 4.214 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.039 0.961 38 H 0.050 0.950 39 H 0.265 0.735 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.107 5.741 6.184 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.016 4.016 3 N -0.033 5.033 4 O -0.090 6.090 5 C 0.115 3.885 6 N -0.200 5.200 7 C 0.059 3.941 8 C -0.163 4.163 9 C -0.205 4.205 10 C 0.011 3.989 11 C 0.337 3.663 12 O -0.387 6.387 13 N -0.307 5.307 14 C 0.127 3.873 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.055 3.945 24 C -0.083 4.083 25 C -0.209 4.209 26 C -0.231 4.231 27 C -0.115 4.115 28 O -0.070 6.070 29 C -0.221 4.221 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.176 0.824 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.169 0.831 43 H 0.164 0.836 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 12.660 7.680 5.514 15.801 hybrid contribution -1.092 -1.820 -0.135 2.127 sum 11.568 5.860 5.379 14.039 Atomic orbital electron populations 1.20891 0.83865 1.06439 1.05260 1.24507 0.98452 0.88941 0.89736 1.80055 0.84003 1.17127 1.22130 1.89208 1.23487 1.14944 1.81351 1.20237 0.89158 0.86359 0.92755 1.66304 1.32892 1.02320 1.18455 1.21288 0.94831 0.88235 0.89701 1.20859 0.94262 0.97129 1.04089 1.22095 0.91342 1.01697 1.05335 1.20209 0.95788 0.91209 0.91649 1.17970 0.85577 0.79577 0.83168 1.90731 1.53198 1.58491 1.36307 1.48305 1.19849 1.43173 1.19375 1.19486 0.76662 0.92834 0.98303 1.21404 0.95097 1.04160 1.36684 0.92099 1.24914 0.95007 0.98366 0.95482 1.69931 0.99198 1.38276 1.45380 0.86433 0.78314 0.82988 0.79643 1.19681 1.20862 1.20808 1.20143 0.95886 0.94205 0.84247 1.23140 0.96515 0.88515 1.00170 1.21698 1.02067 1.00406 0.96690 1.21818 1.01830 0.96269 1.03225 1.23966 0.99790 0.98699 0.89064 1.84050 1.52820 1.27951 1.42179 1.21116 0.93254 0.94218 1.13471 0.88931 0.89511 0.86186 0.89278 0.89670 0.89448 0.82437 0.94286 0.93245 0.92543 0.85908 0.89345 0.83108 0.83650 0.78729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.93 36.01 0.36 -1.20 16 2 C 0.16 2.67 7.46 -80.23 -0.60 2.07 16 3 N -0.28 -4.74 12.82 34.85 0.45 -4.29 16 4 O -0.09 -1.50 12.06 7.66 0.09 -1.41 16 5 C 0.30 4.97 8.64 -16.43 -0.14 4.83 16 6 N -0.48 -7.20 10.25 -9.24 -0.09 -7.30 16 7 C 0.20 2.51 6.78 -82.58 -0.56 1.95 16 8 C -0.11 -0.84 10.14 36.01 0.37 -0.47 16 9 C -0.18 -2.47 7.37 -39.00 -0.29 -2.76 16 10 C 0.02 0.41 4.95 -104.46 -0.52 -0.11 16 11 C 0.55 10.63 6.56 -12.26 -0.08 10.55 16 12 O -0.51 -11.45 13.96 5.34 0.07 -11.38 16 13 N -0.58 -10.86 2.45 -177.50 -0.43 -11.29 16 14 C 0.25 5.67 5.18 -5.20 -0.03 5.65 16 15 C -0.53 -13.52 9.39 -34.44 -0.32 -13.84 16 16 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 17 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -24.44 13.29 55.43 0.74 -23.71 16 19 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.18 2.68 5.73 -5.20 -0.03 2.65 16 24 C -0.03 -0.48 6.87 -35.63 -0.24 -0.73 16 25 C -0.19 -2.71 10.81 -39.70 -0.43 -3.14 16 26 C -0.21 -2.68 10.91 -39.70 -0.43 -3.12 16 27 C -0.05 -0.59 12.09 29.42 0.36 -0.24 16 28 O -0.17 -2.61 10.65 5.69 0.06 -2.55 16 29 C -0.21 -3.60 6.20 -104.83 -0.65 -4.25 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.12 2.02 5.12 -51.93 -0.27 1.76 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.16 1.78 7.51 -52.49 -0.39 1.39 16 37 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 38 H 0.05 1.31 7.35 -51.93 -0.38 0.92 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 40 H 0.12 1.72 8.04 -51.93 -0.42 1.30 16 41 H 0.09 1.14 4.70 -51.92 -0.24 0.89 16 42 H 0.15 2.09 8.06 -52.49 -0.42 1.66 16 43 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -31.74 382.52 -6.76 -38.50 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.05 Total: 3.03 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.34 Total: -0.54 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.65 Total: -46.59 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.23 Total: -15.33 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.74 -6.76 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079333492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.786 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds