Wall clock time and date at job start Tue Mar 31 2020 05:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48501 * 109.47171 * 270.00244 * 3 2 1 5 5 H 1.48507 * 109.46919 * 30.00318 * 3 2 1 6 6 H 1.48505 * 109.47270 * 150.00078 * 3 2 1 7 7 C 1.38730 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99804 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00293 * 179.97438 * 7 2 1 10 10 C 1.76204 * 99.99854 * 185.00304 * 9 7 2 11 11 C 1.39222 * 120.02073 * 274.96849 * 10 9 7 12 12 C 1.38135 * 120.20447 * 179.97438 * 11 10 9 13 13 C 1.38080 * 120.24034 * 0.04203 * 12 11 10 14 14 C 1.39633 * 120.04165 * 359.97438 * 13 12 11 15 15 C 1.47866 * 120.10299 * 179.97438 * 14 13 12 16 16 O 1.21551 * 119.99983 * 223.62929 * 15 14 13 17 17 N 1.34777 * 119.99804 * 43.62915 * 15 14 13 18 18 C 1.46500 * 120.00148 * 355.52259 * 17 15 14 19 19 C 1.50704 * 109.47076 * 231.49480 * 18 17 15 20 20 C 1.38668 * 120.41774 * 86.71219 * 19 18 17 21 21 C 1.38626 * 118.42139 * 180.02562 * 20 19 18 22 22 C 1.38231 * 119.15828 * 359.97438 * 21 20 19 23 23 N 1.31850 * 120.76624 * 0.02562 * 22 21 20 24 24 C 1.31888 * 121.72440 * 359.70058 * 23 22 21 25 25 C 1.46502 * 119.99689 * 175.52782 * 17 15 14 26 26 C 1.52996 * 117.49919 * 17.24819 * 25 17 15 27 27 C 1.52995 * 117.49684 * 308.59148 * 25 17 15 28 28 C 1.38829 * 120.01988 * 95.24811 * 10 9 7 29 29 H 0.96998 * 119.99958 * 359.97438 * 1 2 3 30 30 H 1.08009 * 119.89954 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.87737 * 180.02562 * 12 11 10 32 32 H 1.08006 * 119.97974 * 180.02562 * 13 12 11 33 33 H 1.08994 * 109.46817 * 111.49725 * 18 17 15 34 34 H 1.09001 * 109.47161 * 351.49378 * 18 17 15 35 35 H 1.08006 * 120.79040 * 359.97438 * 20 19 18 36 36 H 1.08000 * 120.42449 * 180.02562 * 21 20 19 37 37 H 1.08003 * 119.61288 * 179.97438 * 22 21 20 38 38 H 1.07993 * 119.61984 * 180.31281 * 24 23 22 39 39 H 1.09002 * 115.54973 * 162.92132 * 25 17 15 40 40 H 1.09001 * 117.50038 * 0.02562 * 26 25 17 41 41 H 1.09004 * 117.49802 * 145.02115 * 26 25 17 42 42 H 1.09004 * 117.50112 * 214.98270 * 27 25 17 43 43 H 1.08996 * 117.50274 * 359.97438 * 27 25 17 44 44 H 1.07998 * 120.12594 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0098 -1.2014 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2015 -0.0012 10 6 4.0777 -2.9301 -0.1531 11 6 4.0962 -3.7365 0.9817 12 6 4.3351 -5.0922 0.8670 13 6 4.5579 -5.6566 -0.3733 14 6 4.5419 -4.8572 -1.5181 15 6 4.7809 -5.4601 -2.8470 16 8 5.5102 -4.9037 -3.6445 17 7 4.1900 -6.6265 -3.1739 18 6 3.3904 -7.3465 -2.1797 19 6 3.8543 -8.7783 -2.1033 20 6 4.9024 -9.1331 -1.2676 21 6 5.2956 -10.4619 -1.2301 22 6 4.6341 -11.3826 -2.0210 23 7 3.6412 -11.0092 -2.8040 24 6 3.2370 -9.7551 -2.8612 25 6 4.3476 -7.1744 -4.5234 26 6 5.4884 -6.6230 -5.3810 27 6 4.0393 -6.2488 -5.7020 28 6 4.3061 -3.4878 -1.4037 29 1 -0.4850 0.8400 0.0004 30 1 3.9233 -3.3007 1.9547 31 1 4.3479 -5.7128 1.7507 32 1 4.7438 -6.7171 -0.4582 33 1 2.3401 -7.3198 -2.4699 34 1 3.5103 -6.8732 -1.2052 35 1 5.4012 -8.3916 -0.6610 36 1 6.1079 -10.7740 -0.5904 37 1 4.9346 -12.4197 -1.9978 38 1 2.4168 -9.4877 -3.5108 39 1 4.0995 -8.2300 -4.6342 40 1 6.1220 -5.8529 -4.9410 41 1 5.9906 -7.3158 -6.0562 42 1 3.5887 -6.6955 -6.5884 43 1 3.7188 -5.2324 -5.4734 44 1 4.2964 -2.8641 -2.2853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079526050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:06 Heat of formation + Delta-G solvation = 89.261405 kcal Electronic energy + Delta-G solvation = -28041.563211 eV Core-core repulsion = 24245.329600 eV Total energy + Delta-G solvation = -3796.233611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15887 -40.17136 -38.45007 -36.52015 -35.27522 -32.69455 -32.56086 -31.83931 -30.83407 -30.72203 -26.81701 -25.74718 -24.50060 -24.05222 -23.00226 -22.48437 -22.14875 -21.92612 -19.67481 -18.08597 -17.50404 -17.31927 -16.91520 -16.46990 -16.30371 -15.78394 -15.47352 -15.05042 -14.99062 -14.39796 -14.28807 -14.21280 -13.99677 -13.65497 -13.49344 -13.40811 -13.13793 -12.98697 -12.92711 -12.38362 -12.20093 -11.79826 -11.57608 -11.37583 -11.23337 -11.15219 -11.13207 -10.62955 -10.47670 -10.20337 -9.96706 -9.83408 -9.46448 -9.36974 -9.25918 -9.14066 -8.82223 -8.56002 -8.19152 -7.20082 -6.38943 -4.15051 0.63751 0.87901 1.06838 1.46811 2.57044 2.74956 2.86019 3.22969 3.34706 3.42773 3.48623 3.79519 3.86856 4.04122 4.20811 4.27320 4.36305 4.42818 4.48797 4.61753 4.78859 4.83007 4.90044 4.95596 4.98155 5.00280 5.02702 5.08478 5.14004 5.35642 5.40441 5.42374 5.56254 5.66020 5.68653 5.72205 5.80970 5.84297 5.95345 6.07094 6.24006 6.28177 6.37906 6.45613 6.63495 6.72792 6.98460 7.18573 7.57356 7.85067 8.09313 8.37267 9.05048 10.70314 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.002710 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.565291 B =10328.017995 C =11052.072231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.239 1.239 7 C -0.510 4.510 8 H 0.091 0.909 9 S -0.111 6.111 10 C -0.076 4.076 11 C -0.055 4.055 12 C -0.133 4.133 13 C -0.107 4.107 14 C -0.145 4.145 15 C 0.570 3.430 16 O -0.521 6.521 17 N -0.575 5.575 18 C 0.118 3.882 19 C -0.150 4.150 20 C -0.061 4.061 21 C -0.170 4.170 22 C 0.099 3.901 23 N -0.484 5.484 24 C 0.111 3.889 25 C 0.068 3.932 26 C -0.196 4.196 27 C -0.186 4.186 28 C -0.024 4.024 29 H 0.272 0.728 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 -20.789 -2.860 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.163 1.163 7 C -0.657 4.657 8 H 0.109 0.891 9 S 0.123 5.877 10 C -0.187 4.187 11 C -0.075 4.075 12 C -0.153 4.153 13 C -0.125 4.125 14 C -0.150 4.150 15 C 0.361 3.639 16 O -0.398 6.398 17 N -0.305 5.305 18 C -0.004 4.004 19 C -0.153 4.153 20 C -0.087 4.087 21 C -0.190 4.190 22 C -0.058 4.058 23 N -0.192 5.192 24 C -0.046 4.046 25 C -0.036 4.036 26 C -0.233 4.233 27 C -0.225 4.225 28 C -0.046 4.046 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.949 -20.060 -3.714 22.698 hybrid contribution -0.443 0.166 0.411 0.627 sum 9.506 -19.894 -3.302 22.295 Atomic orbital electron populations 1.69914 1.05853 1.27885 1.47455 1.24728 0.94504 0.98852 0.93229 0.86749 0.81604 0.83504 0.80010 1.19000 1.19750 1.16321 1.22224 0.86640 0.97691 1.59169 0.89064 1.83149 1.11254 0.97622 1.95662 1.22197 1.01449 1.01017 0.94051 1.21921 0.93767 0.92912 0.98947 1.21074 1.01948 0.95354 0.96909 1.21326 1.00222 0.98642 0.92355 1.19792 1.07869 0.94920 0.92437 1.18522 0.78881 0.79575 0.86963 1.90555 1.36804 1.61755 1.50725 1.47137 1.50654 1.21677 1.11075 1.21246 0.95511 0.87863 0.95767 1.21090 0.98201 0.97104 0.98902 1.21555 0.94481 0.96520 0.96171 1.22173 1.01659 0.93919 1.01205 1.22827 0.91277 1.00160 0.91502 1.67736 1.13323 1.18734 1.19387 1.22763 0.98039 0.87854 0.95985 1.21600 1.06252 0.96411 0.79379 1.24104 0.93022 1.04824 1.01363 1.23270 0.99586 1.01091 0.98552 1.21738 0.92733 0.92198 0.97883 0.91748 0.84774 0.85455 0.85339 0.89796 0.85392 0.84769 0.84522 0.82673 0.82628 0.85810 0.83581 0.89674 0.88577 0.88404 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.97 55.49 0.77 -24.84 16 2 C 0.10 2.69 5.50 -17.46 -0.10 2.60 16 3 Si 0.86 20.57 27.73 -169.99 -4.71 15.86 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.24 -5.57 6.74 56.52 0.38 -5.19 16 7 C -0.51 -14.13 10.01 30.91 0.31 -13.82 16 8 H 0.09 2.73 8.02 -52.48 -0.42 2.31 16 9 S -0.11 -2.60 19.38 -107.50 -2.08 -4.69 16 10 C -0.08 -1.51 5.45 -39.00 -0.21 -1.73 16 11 C -0.05 -0.91 9.79 -39.25 -0.38 -1.29 16 12 C -0.13 -1.73 10.02 -39.68 -0.40 -2.13 16 13 C -0.11 -1.35 7.45 -39.12 -0.29 -1.64 16 14 C -0.15 -2.26 5.35 -104.99 -0.56 -2.82 16 15 C 0.57 8.66 7.06 -12.32 -0.09 8.57 16 16 O -0.52 -9.17 12.86 5.32 0.07 -9.10 16 17 N -0.58 -6.99 3.04 -168.57 -0.51 -7.51 16 18 C 0.12 1.16 5.53 -5.19 -0.03 1.13 16 19 C -0.15 -1.31 4.74 -104.48 -0.50 -1.81 16 20 C -0.06 -0.49 9.65 -39.28 -0.38 -0.86 16 21 C -0.17 -1.18 10.11 -39.44 -0.40 -1.58 16 22 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 23 N -0.48 -4.69 10.36 -13.25 -0.14 -4.82 16 24 C 0.11 0.99 9.43 -17.55 -0.17 0.82 16 25 C 0.07 0.77 6.24 -67.93 -0.42 0.34 16 26 C -0.20 -2.40 9.64 -26.70 -0.26 -2.65 16 27 C -0.19 -2.21 9.90 -26.70 -0.26 -2.47 16 28 C -0.02 -0.44 9.42 -38.92 -0.37 -0.81 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.22 3.85 -52.48 -0.20 1.02 16 33 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.13 1.28 3.09 -52.05 -0.16 1.12 16 35 H 0.13 0.92 6.15 -52.48 -0.32 0.60 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.20 6.31 -51.93 -0.33 0.87 16 40 H 0.15 2.19 4.94 -53.48 -0.26 1.93 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.38 7.84 -51.93 -0.41 0.97 16 44 H 0.14 2.65 8.06 -52.49 -0.42 2.22 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -32.14 375.98 -10.70 -42.84 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.06 Total: 6.16 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -4.70 Total: -19.57 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.12 Total: -37.17 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.71 Total: 15.86 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.08 Total: -4.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.14 -10.70 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079526050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.104 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds