Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.77926 * 2 1 4 4 C 1.55158 * 110.71808 * 236.76228 * 2 1 3 5 5 C 1.54689 * 101.67822 * 276.97333 * 4 2 1 6 6 N 1.47428 * 104.93918 * 323.27560 * 5 4 2 7 7 S 1.65600 * 125.64815 * 204.07182 * 6 5 4 8 8 O 1.42098 * 104.27576 * 153.62468 * 7 6 5 9 9 O 1.42102 * 104.27841 * 25.76595 * 7 6 5 10 10 C 1.81404 * 104.45074 * 269.69421 * 7 6 5 11 11 C 1.53000 * 109.46946 * 180.02562 * 10 7 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47116 * 59.99479 * 17 15 13 19 19 H 1.48490 * 109.47381 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46756 * 300.00079 * 17 15 13 21 21 C 1.47025 * 108.70490 * 23.81405 * 6 5 4 22 22 H 1.08998 * 109.88247 * 239.75032 * 21 6 5 23 23 C 1.50694 * 109.88424 * 118.73460 * 21 6 5 24 24 C 1.38261 * 119.99176 * 321.18011 * 23 21 6 25 25 C 1.38230 * 120.05207 * 179.72249 * 24 23 21 26 26 C 1.38216 * 120.02301 * 0.55169 * 25 24 23 27 27 C 1.38435 * 119.97744 * 359.72486 * 26 25 24 28 28 F 1.35101 * 120.02795 * 180.02562 * 27 26 25 29 29 C 1.38183 * 119.98350 * 141.45318 * 23 21 6 30 30 H 1.09000 * 109.46532 * 296.75864 * 1 2 3 31 31 H 1.08994 * 109.46785 * 56.75983 * 1 2 3 32 32 H 1.08999 * 109.47105 * 176.76342 * 1 2 3 33 33 H 1.09004 * 111.00535 * 35.21205 * 4 2 1 34 34 H 1.08998 * 111.00672 * 159.06383 * 4 2 1 35 35 H 1.09005 * 110.39277 * 204.36641 * 5 4 2 36 36 H 1.08999 * 110.23864 * 82.11294 * 5 4 2 37 37 H 1.09002 * 109.47124 * 60.00022 * 10 7 6 38 38 H 1.09001 * 109.46975 * 300.00144 * 10 7 6 39 39 H 1.09001 * 109.47194 * 299.99756 * 11 10 7 40 40 H 1.08992 * 109.47399 * 59.99928 * 11 10 7 41 41 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 42 42 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 43 43 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 44 44 H 1.08003 * 119.97382 * 359.97438 * 24 23 21 45 45 H 1.08000 * 119.98579 * 180.27720 * 25 24 23 46 46 H 1.08000 * 120.00862 * 179.69997 * 26 25 24 47 47 H 1.08004 * 120.01268 * 359.97438 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 2.0177 -2.2493 -0.6890 6 7 2.3717 -2.1532 0.7389 7 16 3.0040 -3.3748 1.6609 8 8 3.7297 -2.7037 2.6817 9 8 3.6642 -4.2151 0.7242 10 6 1.5540 -4.2136 2.3570 11 6 2.0124 -5.3761 3.2399 12 6 0.7894 -6.0839 3.8266 13 6 1.2407 -7.2293 4.6957 14 1 2.2946 -7.4323 4.8172 15 6 0.3085 -8.0180 5.3359 16 7 -0.9747 -7.7704 5.1884 17 14 0.8680 -9.4373 6.4138 18 1 1.7158 -8.9171 7.5166 19 1 -0.3189 -10.1244 6.9831 20 1 1.6522 -10.3991 5.5981 21 6 2.0761 -0.7912 1.2073 22 1 2.9869 -0.3207 1.5775 23 6 1.0423 -0.8390 2.3027 24 6 -0.0094 -1.7329 2.2220 25 6 -0.9552 -1.7818 3.2289 26 6 -0.8567 -0.9290 4.3121 27 6 0.1927 -0.0296 4.3913 28 9 0.2902 0.8041 5.4499 29 6 1.1428 0.0145 3.3847 30 1 -0.3632 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 1.4396 -0.6662 -2.0871 34 1 3.1061 -0.5074 -1.4376 35 1 2.7379 -2.8744 -1.2171 36 1 1.0104 -2.6496 -0.8041 37 1 0.9315 -4.5951 1.5476 38 1 0.9787 -3.5077 2.9561 39 1 2.5879 -6.0821 2.6413 40 1 2.6346 -4.9943 4.0493 41 1 0.2135 -5.3781 4.4253 42 1 0.1674 -6.4658 3.0170 43 1 -1.6305 -8.3251 5.6391 44 1 -0.0898 -2.3963 1.3735 45 1 -1.7738 -2.4835 3.1669 46 1 -1.5985 -0.9640 5.0963 47 1 1.9622 0.7155 3.4456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080783968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = -99.815414 kcal Electronic energy + Delta-G solvation = -30965.783919 eV Core-core repulsion = 26768.696529 eV Total energy + Delta-G solvation = -4197.087389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.93739 -40.52288 -38.05049 -36.91114 -35.76018 -34.68136 -32.61663 -32.23255 -32.13941 -30.73915 -28.49453 -27.78707 -26.73916 -23.80133 -23.33813 -22.75329 -21.87005 -20.57140 -20.19255 -18.86330 -17.86274 -17.20889 -16.60245 -16.45372 -16.36010 -16.01968 -15.75625 -15.61415 -15.44600 -14.71255 -14.49039 -14.36867 -14.26257 -13.80418 -13.64818 -13.27565 -13.20375 -12.81538 -12.57724 -12.45883 -12.33002 -12.13802 -12.06812 -11.92451 -11.82036 -11.68838 -11.56695 -11.46022 -11.21709 -11.11184 -10.97758 -10.89869 -10.85570 -10.79396 -10.43987 -9.95313 -9.56887 -9.27923 -9.08670 -8.97929 -8.66595 -8.40512 -6.06159 -4.08806 0.38988 0.97663 1.09013 2.70962 3.31859 3.35622 3.39047 3.42208 3.93820 4.00452 4.09735 4.25985 4.40432 4.42409 4.51429 4.67249 4.70288 4.91133 4.95127 5.01770 5.09040 5.15630 5.16417 5.26410 5.26614 5.30648 5.42767 5.46048 5.53532 5.63316 5.74032 5.76068 5.79339 5.82901 5.89538 5.93747 6.02176 6.06597 6.17747 6.22471 6.30113 6.39468 6.44874 6.75905 6.86986 7.56153 7.66863 7.91858 8.32805 8.96811 9.55763 11.04977 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.003698 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.761138 B = 7568.858455 C = 9119.564673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.113 3.887 6 N -1.009 6.009 7 S 2.608 3.392 8 O -0.953 6.953 9 O -0.958 6.958 10 C -0.615 4.615 11 C -0.104 4.104 12 C 0.034 3.966 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.197 3.803 22 H 0.092 0.908 23 C -0.083 4.083 24 C -0.123 4.123 25 C -0.085 4.085 26 C -0.147 4.147 27 C 0.099 3.901 28 F -0.140 7.140 29 C -0.136 4.136 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 19.632 -12.696 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.012 4.012 6 N -0.845 5.845 7 S 2.707 3.293 8 O -0.944 6.944 9 O -0.949 6.949 10 C -0.747 4.747 11 C -0.143 4.143 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.090 3.910 22 H 0.110 0.890 23 C -0.085 4.085 24 C -0.141 4.141 25 C -0.103 4.103 26 C -0.166 4.166 27 C 0.080 3.920 28 F -0.119 7.119 29 C -0.156 4.156 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.891 19.361 -12.478 23.051 hybrid contribution -0.565 -0.784 1.038 1.418 sum 0.326 18.577 -11.440 21.819 Atomic orbital electron populations 1.22000 0.93897 1.02556 1.02035 1.22184 0.96714 0.99035 0.92978 0.89176 1.22804 1.02046 0.94029 0.97404 1.22036 1.00823 0.98251 0.80126 1.58919 1.81727 1.23432 1.20423 1.05175 0.76957 0.73370 0.73833 1.93561 1.69052 1.72814 1.58954 1.93558 1.71958 1.67601 1.61774 1.30865 1.19676 1.12185 1.11966 1.21491 1.02401 0.93391 0.97063 1.19023 0.91022 0.94681 0.95670 1.21217 0.93089 1.13481 1.28685 0.92495 1.24994 0.94884 0.97697 0.96645 1.69944 1.00220 1.39629 1.43623 0.86635 0.78075 0.82379 0.80828 1.20123 1.21233 1.20123 1.20225 0.95705 0.82808 0.92217 0.88985 1.20011 0.96715 0.96403 0.95332 1.21209 0.94260 0.99033 0.99629 1.21109 0.99107 0.97462 0.92584 1.21236 0.98514 0.96487 1.00339 1.17651 0.96962 0.91897 0.85526 1.91501 1.96034 1.69730 1.54616 1.20910 0.99523 1.01595 0.93553 0.91861 0.92529 0.91787 0.89685 0.90408 0.89530 0.91477 0.85472 0.84822 0.91729 0.91742 0.96128 0.96168 0.92887 0.84896 0.84310 0.84539 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.74 37.16 0.29 -0.70 16 2 C -0.09 -0.62 3.55 -88.78 -0.32 -0.94 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.80 6.56 -24.70 -0.16 -0.96 16 5 C 0.11 0.98 6.74 -2.65 -0.02 0.97 16 6 N -1.01 -11.52 2.57 -105.76 -0.27 -11.79 16 7 S 2.61 40.78 5.34 -107.50 -0.57 40.20 16 8 O -0.95 -17.53 17.60 -57.54 -1.01 -18.54 16 9 O -0.96 -17.29 17.27 -57.54 -0.99 -18.28 16 10 C -0.62 -9.82 4.88 37.16 0.18 -9.64 16 11 C -0.10 -2.14 5.16 -26.73 -0.14 -2.28 16 12 C 0.03 0.87 4.97 -27.88 -0.14 0.73 16 13 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 C 0.20 1.96 2.89 -68.10 -0.20 1.76 16 22 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 23 C -0.08 -0.90 3.34 -104.64 -0.35 -1.25 16 24 C -0.12 -1.32 3.92 -39.58 -0.16 -1.48 16 25 C -0.08 -0.95 9.75 -39.59 -0.39 -1.34 16 26 C -0.15 -1.72 10.03 -39.52 -0.40 -2.12 16 27 C 0.10 1.22 7.30 -39.42 -0.29 0.93 16 28 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 29 C -0.14 -1.55 9.66 -39.51 -0.38 -1.93 16 30 H 0.06 0.48 6.81 -51.93 -0.35 0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.44 5.73 -51.93 -0.30 0.14 16 33 H 0.08 0.40 8.04 -51.93 -0.42 -0.01 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.80 7.67 -51.93 -0.40 0.41 16 36 H 0.07 0.48 7.71 -51.93 -0.40 0.08 16 37 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.13 2.03 5.08 -51.92 -0.26 1.77 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.13 1.25 6.35 -52.48 -0.33 0.92 16 45 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 46 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.14 1.34 8.05 -52.48 -0.42 0.91 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -34.41 386.03 -11.22 -45.63 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.07 Total: -0.47 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: -2.87 Total: -31.79 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.47 Total: -37.35 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -2.01 Total: -36.82 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 40.78 SS G_CDS: -0.57 Total: 40.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.41 -11.22 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080783968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.182 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds