Wall clock time and date at job start Tue Mar 31 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.77926 * 2 1 4 4 C 1.55158 * 110.71808 * 236.76228 * 2 1 3 5 5 C 1.54689 * 101.67822 * 276.97333 * 4 2 1 6 6 N 1.47428 * 104.93918 * 323.27560 * 5 4 2 7 7 S 1.65600 * 125.64815 * 204.07182 * 6 5 4 8 8 O 1.42098 * 104.27576 * 153.62468 * 7 6 5 9 9 O 1.42102 * 104.27841 * 25.76595 * 7 6 5 10 10 C 1.81404 * 104.45074 * 269.69421 * 7 6 5 11 11 C 1.53000 * 109.46946 * 180.02562 * 10 7 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47116 * 59.99479 * 17 15 13 19 19 H 1.48490 * 109.47381 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46756 * 300.00079 * 17 15 13 21 21 C 1.47025 * 108.70490 * 23.81405 * 6 5 4 22 22 H 1.08998 * 109.88247 * 239.75032 * 21 6 5 23 23 C 1.50694 * 109.88424 * 118.73460 * 21 6 5 24 24 C 1.38261 * 119.99176 * 321.18011 * 23 21 6 25 25 C 1.38230 * 120.05207 * 179.72249 * 24 23 21 26 26 C 1.38216 * 120.02301 * 0.55169 * 25 24 23 27 27 C 1.38435 * 119.97744 * 359.72486 * 26 25 24 28 28 F 1.35101 * 120.02795 * 180.02562 * 27 26 25 29 29 C 1.38183 * 119.98350 * 141.45318 * 23 21 6 30 30 H 1.09000 * 109.46532 * 296.75864 * 1 2 3 31 31 H 1.08994 * 109.46785 * 56.75983 * 1 2 3 32 32 H 1.08999 * 109.47105 * 176.76342 * 1 2 3 33 33 H 1.09004 * 111.00535 * 35.21205 * 4 2 1 34 34 H 1.08998 * 111.00672 * 159.06383 * 4 2 1 35 35 H 1.09005 * 110.39277 * 204.36641 * 5 4 2 36 36 H 1.08999 * 110.23864 * 82.11294 * 5 4 2 37 37 H 1.09002 * 109.47124 * 60.00022 * 10 7 6 38 38 H 1.09001 * 109.46975 * 300.00144 * 10 7 6 39 39 H 1.09001 * 109.47194 * 299.99756 * 11 10 7 40 40 H 1.08992 * 109.47399 * 59.99928 * 11 10 7 41 41 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 42 42 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 43 43 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 44 44 H 1.08003 * 119.97382 * 359.97438 * 24 23 21 45 45 H 1.08000 * 119.98579 * 180.27720 * 25 24 23 46 46 H 1.08000 * 120.00862 * 179.69997 * 26 25 24 47 47 H 1.08004 * 120.01268 * 359.97438 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 2.0177 -2.2493 -0.6890 6 7 2.3717 -2.1532 0.7389 7 16 3.0040 -3.3748 1.6609 8 8 3.7297 -2.7037 2.6817 9 8 3.6642 -4.2151 0.7242 10 6 1.5540 -4.2136 2.3570 11 6 2.0124 -5.3761 3.2399 12 6 0.7894 -6.0839 3.8266 13 6 1.2407 -7.2293 4.6957 14 1 2.2946 -7.4323 4.8172 15 6 0.3085 -8.0180 5.3359 16 7 -0.9747 -7.7704 5.1884 17 14 0.8680 -9.4373 6.4138 18 1 1.7158 -8.9171 7.5166 19 1 -0.3189 -10.1244 6.9831 20 1 1.6522 -10.3991 5.5981 21 6 2.0761 -0.7912 1.2073 22 1 2.9869 -0.3207 1.5775 23 6 1.0423 -0.8390 2.3027 24 6 -0.0094 -1.7329 2.2220 25 6 -0.9552 -1.7818 3.2289 26 6 -0.8567 -0.9290 4.3121 27 6 0.1927 -0.0296 4.3913 28 9 0.2902 0.8041 5.4499 29 6 1.1428 0.0145 3.3847 30 1 -0.3632 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 1.4396 -0.6662 -2.0871 34 1 3.1061 -0.5074 -1.4376 35 1 2.7379 -2.8744 -1.2171 36 1 1.0104 -2.6496 -0.8041 37 1 0.9315 -4.5951 1.5476 38 1 0.9787 -3.5077 2.9561 39 1 2.5879 -6.0821 2.6413 40 1 2.6346 -4.9943 4.0493 41 1 0.2135 -5.3781 4.4253 42 1 0.1674 -6.4658 3.0170 43 1 -1.6305 -8.3251 5.6391 44 1 -0.0898 -2.3963 1.3735 45 1 -1.7738 -2.4835 3.1669 46 1 -1.5985 -0.9640 5.0963 47 1 1.9622 0.7155 3.4456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080783968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:43 Heat of formation + Delta-G solvation = -120.322520 kcal Electronic energy + Delta-G solvation = -30966.673174 eV Core-core repulsion = 26768.696529 eV Total energy + Delta-G solvation = -4197.976644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.91659 -41.30994 -38.85840 -38.25416 -37.12169 -36.49055 -34.19741 -33.37288 -32.92761 -31.64529 -29.66396 -29.17852 -27.43332 -25.62836 -24.18653 -23.66072 -22.78227 -22.21960 -20.89385 -19.95504 -19.01093 -18.59800 -18.02514 -17.48379 -17.29729 -17.15291 -17.03955 -16.62347 -16.53531 -16.31503 -15.85232 -15.42346 -15.14679 -14.66108 -14.52162 -14.47538 -14.19779 -14.00990 -13.94500 -13.55945 -13.51274 -13.31362 -13.23459 -13.14562 -13.02865 -12.89564 -12.81310 -12.72284 -12.57893 -12.45572 -12.23938 -12.15584 -11.78975 -11.72797 -11.52197 -11.41946 -11.39667 -11.12133 -10.56818 -10.12863 -9.90831 -9.57387 -8.22669 -6.33102 -0.86162 0.08326 0.19947 1.39362 1.41402 1.49288 1.61664 2.39218 2.53572 2.71526 2.98940 3.10928 3.18654 3.52100 3.57948 3.68656 3.73429 3.83354 3.93388 4.08715 4.11988 4.15404 4.35569 4.35663 4.38846 4.53932 4.60001 4.66997 4.72485 4.81962 4.88996 4.91486 4.94415 5.02670 5.05654 5.06200 5.14610 5.21182 5.27425 5.29110 5.35298 5.41654 5.44279 5.52545 5.60315 5.63061 5.78782 5.87679 6.19861 6.81127 7.35760 8.88302 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.003698 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.761138 B = 7568.858455 C = 9119.564673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.108 0.892 4 C -0.114 4.114 5 C 0.099 3.901 6 N -1.003 6.003 7 S 2.630 3.370 8 O -0.984 6.984 9 O -0.983 6.983 10 C -0.615 4.615 11 C -0.103 4.103 12 C 0.038 3.962 13 C -0.555 4.555 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.267 1.267 21 C 0.190 3.810 22 H 0.090 0.910 23 C -0.084 4.084 24 C -0.125 4.125 25 C -0.094 4.094 26 C -0.157 4.157 27 C 0.080 3.920 28 F -0.149 7.149 29 C -0.143 4.143 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.002 0.998 42 H 0.007 0.993 43 H 0.265 0.735 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 20.200 -14.289 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.126 0.874 4 C -0.153 4.153 5 C -0.025 4.025 6 N -0.841 5.841 7 S 2.728 3.272 8 O -0.975 6.975 9 O -0.974 6.974 10 C -0.746 4.746 11 C -0.142 4.142 12 C 0.000 4.000 13 C -0.593 4.593 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.192 1.192 21 C 0.084 3.916 22 H 0.108 0.892 23 C -0.085 4.085 24 C -0.143 4.143 25 C -0.112 4.112 26 C -0.176 4.176 27 C 0.061 3.939 28 F -0.127 7.127 29 C -0.162 4.162 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.021 0.979 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.161 0.839 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.939 19.920 -14.069 24.405 hybrid contribution -0.613 -0.903 1.483 1.841 sum 0.326 19.016 -12.586 22.806 Atomic orbital electron populations 1.21992 0.93520 1.02650 1.02242 1.22207 0.96888 0.99441 0.91487 0.87367 1.22824 1.02932 0.91798 0.97773 1.22403 1.01755 1.00170 0.78148 1.58554 1.81433 1.22850 1.21302 1.04202 0.76400 0.73356 0.73250 1.93518 1.70082 1.73433 1.60440 1.93522 1.72702 1.68897 1.62253 1.30843 1.20757 1.10846 1.12127 1.21290 1.00403 0.94861 0.97692 1.18887 0.92393 0.93966 0.94757 1.21690 0.93330 1.14715 1.29528 0.92507 1.25853 0.94960 1.00343 0.97934 1.70050 1.01231 1.40755 1.44492 0.85605 0.77915 0.79143 0.79064 1.19512 1.20468 1.19235 1.20484 0.95565 0.82148 0.93381 0.89233 1.20152 0.96897 0.96095 0.95382 1.21417 0.93946 0.99055 0.99869 1.21294 0.99660 0.97555 0.92642 1.21412 0.98715 0.96606 1.00881 1.17862 0.97768 0.92405 0.85835 1.91474 1.96144 1.70042 1.55073 1.21116 0.99620 1.02036 0.93416 0.93012 0.90817 0.91935 0.87107 0.90040 0.90137 0.89463 0.83085 0.84151 0.91617 0.92355 0.97912 0.97488 0.92637 0.83413 0.83497 0.83884 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.74 71.98 0.56 -0.96 16 2 C -0.08 -0.86 3.55 -9.60 -0.03 -0.90 16 3 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.05 6.56 31.91 0.21 -0.84 16 5 C 0.10 1.46 6.74 86.78 0.59 2.04 16 6 N -1.00 -21.08 2.57 -488.52 -1.25 -22.33 16 7 S 2.63 80.32 5.34 -56.49 -0.30 80.02 16 8 O -0.98 -36.06 17.60 -127.65 -2.25 -38.30 16 9 O -0.98 -34.79 17.27 -127.65 -2.21 -37.00 16 10 C -0.62 -19.29 4.88 71.98 0.35 -18.94 16 11 C -0.10 -4.30 5.16 30.59 0.16 -4.14 16 12 C 0.04 1.96 4.97 29.85 0.15 2.11 16 13 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 17 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C 0.19 3.42 2.89 44.59 0.13 3.54 16 22 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16 23 C -0.08 -1.71 3.34 -19.87 -0.07 -1.78 16 24 C -0.12 -2.53 3.92 22.27 0.09 -2.44 16 25 C -0.09 -2.06 9.75 22.26 0.22 -1.84 16 26 C -0.16 -3.72 10.03 22.31 0.22 -3.49 16 27 C 0.08 2.00 7.30 22.38 0.16 2.16 16 28 F -0.15 -3.94 17.27 44.97 0.78 -3.17 16 29 C -0.14 -3.18 9.66 22.32 0.22 -2.96 16 30 H 0.05 0.67 6.81 -2.39 -0.02 0.65 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.66 5.73 -2.39 -0.01 0.65 16 33 H 0.11 0.53 8.04 -2.39 -0.02 0.51 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.32 7.67 -2.38 -0.02 1.30 16 36 H 0.09 0.95 7.71 -2.39 -0.02 0.93 16 37 H 0.15 3.93 8.14 -2.39 -0.02 3.91 16 38 H 0.14 4.22 5.08 -2.39 -0.01 4.20 16 39 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.15 2.47 6.35 -2.91 -0.02 2.46 16 45 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 46 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.15 2.82 8.05 -2.91 -0.02 2.79 16 Total: -1.00 -74.41 386.03 1.69 -72.72 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.97 Total: 15.31 kcal Atomic # 6 Polarization: -62.57 SS G_CDS: 3.64 Total: -58.93 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -0.97 Total: -76.88 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -4.45 Total: -75.30 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 80.32 SS G_CDS: -0.30 Total: 80.02 kcal Total: -74.41 1.69 -72.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080783968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.602 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds