Wall clock time and date at job start Tue Mar 31 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.78486 * 2 1 4 4 C 1.55156 * 110.72010 * 123.23778 * 2 1 3 5 5 C 1.54919 * 101.58191 * 153.86750 * 4 2 1 6 6 N 1.47426 * 104.82848 * 322.99021 * 5 4 2 7 7 S 1.65601 * 125.64498 * 204.09319 * 6 5 4 8 8 O 1.42096 * 104.27862 * 26.11073 * 7 6 5 9 9 O 1.42100 * 104.27720 * 153.97509 * 7 6 5 10 10 C 1.81407 * 104.44704 * 270.04163 * 7 6 5 11 11 C 1.53006 * 109.46887 * 179.97438 * 10 7 6 12 12 C 1.52996 * 109.47123 * 179.97438 * 11 10 7 13 13 C 1.50696 * 109.47319 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99737 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99985 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00106 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99642 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47099 * 90.00568 * 17 15 13 19 19 H 1.48496 * 109.46887 * 210.00512 * 17 15 13 20 20 H 1.48501 * 109.47339 * 330.00170 * 17 15 13 21 21 C 1.47014 * 108.70542 * 24.13019 * 6 5 4 22 22 H 1.09001 * 109.88754 * 239.36755 * 21 6 5 23 23 C 1.50702 * 109.88339 * 118.35578 * 21 6 5 24 24 C 1.38264 * 119.98681 * 321.47579 * 23 21 6 25 25 C 1.38230 * 120.04955 * 179.97438 * 24 23 21 26 26 C 1.38222 * 120.02527 * 0.02562 * 25 24 23 27 27 C 1.38436 * 119.97559 * 359.97438 * 26 25 24 28 28 F 1.35093 * 120.02478 * 180.02562 * 27 26 25 29 29 C 1.38175 * 119.98427 * 141.45304 * 23 21 6 30 30 H 1.08997 * 109.46787 * 183.23552 * 1 2 3 31 31 H 1.08994 * 109.47341 * 303.23691 * 1 2 3 32 32 H 1.09004 * 109.46759 * 63.24151 * 1 2 3 33 33 H 1.08993 * 111.00850 * 35.79378 * 4 2 1 34 34 H 1.09002 * 111.03554 * 271.95022 * 4 2 1 35 35 H 1.08998 * 110.36321 * 204.15447 * 5 4 2 36 36 H 1.09002 * 110.36714 * 81.82953 * 5 4 2 37 37 H 1.08997 * 109.47308 * 300.00129 * 10 7 6 38 38 H 1.08996 * 109.47082 * 60.00384 * 10 7 6 39 39 H 1.08997 * 109.47331 * 300.00212 * 11 10 7 40 40 H 1.09000 * 109.46657 * 59.99875 * 11 10 7 41 41 H 1.08997 * 109.47245 * 300.00332 * 12 11 10 42 42 H 1.09000 * 109.46787 * 59.99955 * 12 11 10 43 43 H 0.97002 * 120.00231 * 179.97438 * 16 15 13 44 44 H 1.08001 * 119.97634 * 359.97438 * 24 23 21 45 45 H 1.07995 * 119.98355 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.01068 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.01835 * 359.72954 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0789 -0.7954 1.2138 5 6 3.4633 -1.2497 0.6875 6 7 3.2445 -1.5507 -0.7390 7 16 4.1634 -2.5741 -1.6614 8 8 4.7145 -3.4900 -0.7253 9 8 3.2793 -3.0137 -2.6834 10 6 5.4621 -1.5146 -2.3556 11 6 6.3880 -2.3546 -3.2378 12 6 7.4829 -1.4610 -3.8238 13 6 8.3953 -2.2883 -4.6922 14 1 8.2122 -3.3457 -4.8142 15 6 9.4632 -1.6952 -5.3317 16 7 9.6858 -0.4077 -5.1834 17 14 10.5937 -2.7207 -6.4087 18 1 10.0808 -2.7243 -7.8023 19 1 11.9602 -2.1401 -6.3856 20 1 10.6388 -4.1131 -5.8942 21 6 2.0761 -0.7912 -1.2072 22 1 1.3141 -1.4756 -1.5801 23 6 2.4882 0.1611 -2.3001 24 6 3.6992 0.8235 -2.2192 25 6 4.0787 1.6969 -3.2212 26 6 3.2475 1.9094 -4.3049 27 6 2.0348 1.2468 -4.3870 28 9 1.2220 1.4534 -5.4460 29 6 1.6559 0.3716 -3.3828 30 1 -0.3633 -1.0260 0.0580 31 1 -0.3634 0.5632 0.8595 32 1 -0.3633 0.4627 -0.9177 33 1 1.4452 -1.6535 1.4375 34 1 2.1850 -0.1523 2.0874 35 1 3.7960 -2.1426 1.2169 36 1 4.1932 -0.4478 0.7985 37 1 5.0063 -0.7259 -2.9541 38 1 6.0388 -1.0687 -1.5454 39 1 6.8438 -3.1430 -2.6389 40 1 5.8114 -2.8010 -4.0480 41 1 7.0268 -0.6728 -4.4228 42 1 8.0595 -1.0142 -3.0138 43 1 10.4373 0.0096 -5.6330 44 1 4.3490 0.6584 -1.3726 45 1 5.0250 2.2134 -3.1571 46 1 3.5445 2.5915 -5.0878 47 1 0.7121 -0.1494 -3.4481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080783969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:48 Heat of formation + Delta-G solvation = -104.919965 kcal Electronic energy + Delta-G solvation = -30710.533027 eV Core-core repulsion = 26513.224288 eV Total energy + Delta-G solvation = -4197.308739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.140 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.94812 -40.26779 -38.08528 -36.91437 -35.76100 -34.68302 -32.87720 -32.23390 -32.14828 -30.63043 -28.90238 -27.80759 -26.28259 -23.77864 -22.99955 -22.84483 -21.92301 -20.65205 -20.44930 -18.86008 -17.83939 -17.31274 -16.64958 -16.51577 -16.31723 -16.03931 -15.73229 -15.61493 -15.41922 -14.50937 -14.44045 -14.20422 -14.14383 -13.92476 -13.73428 -13.46821 -13.18202 -12.79736 -12.63296 -12.48259 -12.27025 -12.20497 -12.07427 -11.91748 -11.84775 -11.74184 -11.57037 -11.51566 -11.22306 -11.17397 -11.03286 -10.91822 -10.86482 -10.82737 -10.43009 -9.95836 -9.57593 -9.27357 -9.09184 -8.98432 -8.70015 -8.41156 -6.06469 -4.09070 0.38795 0.96780 1.08048 2.70361 3.30020 3.36127 3.40269 3.41332 3.93300 4.00089 4.08998 4.27181 4.39079 4.42193 4.52061 4.64800 4.68373 4.92036 4.95835 5.04377 5.08195 5.14194 5.15453 5.21416 5.25892 5.30309 5.36446 5.44762 5.50535 5.59783 5.66738 5.74507 5.80087 5.82468 5.89421 5.93295 5.98529 6.02602 6.18860 6.22171 6.30391 6.38488 6.44798 6.75407 6.86891 7.56204 7.66673 7.91673 8.32615 8.96820 9.55578 11.04701 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.003579 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.379197 B = 7822.551810 C = 9466.680289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.112 3.888 6 N -1.010 6.010 7 S 2.608 3.392 8 O -0.958 6.958 9 O -0.953 6.953 10 C -0.615 4.615 11 C -0.104 4.104 12 C 0.034 3.966 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.197 3.803 22 H 0.093 0.907 23 C -0.088 4.088 24 C -0.126 4.126 25 C -0.083 4.083 26 C -0.147 4.147 27 C 0.099 3.901 28 F -0.140 7.140 29 C -0.135 4.135 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 6.517 12.711 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.013 4.013 6 N -0.845 5.845 7 S 2.706 3.294 8 O -0.949 6.949 9 O -0.944 6.944 10 C -0.747 4.747 11 C -0.143 4.143 12 C -0.004 4.004 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.091 3.909 22 H 0.111 0.889 23 C -0.089 4.089 24 C -0.144 4.144 25 C -0.101 4.101 26 C -0.166 4.166 27 C 0.080 3.920 28 F -0.118 7.118 29 C -0.154 4.154 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.022 5.636 12.496 23.447 hybrid contribution 0.978 0.296 -1.058 1.471 sum -18.044 5.933 11.437 22.172 Atomic orbital electron populations 1.21780 0.93701 1.02377 1.02311 1.22280 0.96348 0.99505 0.92927 0.89211 1.22871 0.95826 1.00235 0.97351 1.22084 0.97808 1.01269 0.80136 1.58920 1.42121 1.62955 1.20549 1.05186 0.75493 0.74851 0.73834 1.93557 1.80116 1.59390 1.61802 1.93561 1.62792 1.79149 1.58876 1.30871 1.16312 1.15560 1.11978 1.21492 0.97434 0.98347 0.97069 1.19028 0.91400 0.94324 0.95693 1.21256 1.11158 0.95382 1.28612 0.92429 1.24997 0.97631 0.94975 0.96658 1.69947 1.29895 1.09965 1.43597 0.86576 0.79974 0.80524 0.80875 1.20569 1.21168 1.19734 1.20256 0.87497 0.90936 0.92220 0.88891 1.20107 0.94902 0.98331 0.95582 1.21178 0.96300 0.96958 0.99968 1.21123 0.99327 0.97002 0.92638 1.21251 0.93395 1.01628 1.00312 1.17660 0.89960 0.98865 0.85497 1.91500 1.71965 1.93815 1.54560 1.20919 1.01603 0.99399 0.93512 0.92137 0.91963 0.92139 0.90313 0.89788 0.89486 0.91389 0.84828 0.85447 0.91707 0.91748 0.96131 0.96148 0.92936 0.84918 0.84264 0.84481 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.14 37.16 0.34 -0.52 16 2 C -0.09 -0.65 3.06 -88.78 -0.27 -0.92 16 3 H 0.09 0.61 7.80 -51.93 -0.41 0.20 16 4 C -0.12 -0.81 6.53 -24.58 -0.16 -0.97 16 5 C 0.11 0.98 7.07 -2.52 -0.02 0.96 16 6 N -1.01 -11.67 2.55 -105.63 -0.27 -11.94 16 7 S 2.61 41.04 5.34 -107.50 -0.57 40.46 16 8 O -0.96 -17.34 17.28 -57.54 -0.99 -18.34 16 9 O -0.95 -17.62 17.60 -57.54 -1.01 -18.63 16 10 C -0.62 -9.87 4.86 37.16 0.18 -9.69 16 11 C -0.10 -2.15 5.16 -26.73 -0.14 -2.29 16 12 C 0.03 0.85 4.97 -27.89 -0.14 0.72 16 13 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16 14 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.20 2.00 2.53 -68.11 -0.17 1.83 16 22 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 23 C -0.09 -0.97 4.56 -104.63 -0.48 -1.45 16 24 C -0.13 -1.38 6.01 -39.57 -0.24 -1.62 16 25 C -0.08 -0.95 9.76 -39.59 -0.39 -1.33 16 26 C -0.15 -1.74 10.03 -39.51 -0.40 -2.14 16 27 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 28 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 29 C -0.13 -1.56 9.66 -39.51 -0.38 -1.94 16 30 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.51 8.02 -51.93 -0.42 0.09 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.81 7.67 -51.93 -0.40 0.41 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.13 2.05 5.08 -51.93 -0.26 1.78 16 38 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 1.26 7.12 -52.49 -0.37 0.89 16 45 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.14 1.35 8.05 -52.49 -0.42 0.93 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -34.53 394.40 -11.40 -45.93 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.29 Total: -0.67 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -2.96 Total: -31.97 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.47 Total: -37.53 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -2.01 Total: -36.97 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 41.04 SS G_CDS: -0.57 Total: 40.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.53 -11.40 -45.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080783969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.989 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds