Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42098 * 108.58159 * 2 1 4 4 O 1.42102 * 108.57451 * 228.97364 * 2 1 3 5 5 C 1.81398 * 101.92006 * 114.48835 * 2 1 3 6 6 C 1.53006 * 109.47147 * 173.75822 * 5 2 1 7 7 C 1.53005 * 115.54668 * 40.45346 * 6 5 2 8 8 C 1.50701 * 109.46902 * 67.24058 * 7 6 5 9 9 O 1.21277 * 120.00033 * 325.11013 * 8 7 6 10 10 N 1.34774 * 119.99901 * 145.11482 * 8 7 6 11 11 C 1.37139 * 120.00024 * 242.30066 * 10 8 7 12 12 H 1.08001 * 120.00233 * 189.46968 * 11 10 8 13 13 C 1.38887 * 120.00028 * 9.47413 * 11 10 8 14 14 N 1.31425 * 119.99864 * 7.98126 * 13 11 10 15 15 Si 1.86800 * 120.00250 * 187.98289 * 13 11 10 16 16 H 1.48501 * 109.46976 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47081 * 119.99515 * 15 13 11 18 18 H 1.48496 * 109.47449 * 239.99995 * 15 13 11 19 19 C 1.39794 * 119.99901 * 62.29831 * 10 8 7 20 20 C 1.38996 * 120.06550 * 5.60036 * 19 10 8 21 21 C 1.38065 * 119.96906 * 179.69666 * 20 19 10 22 22 C 1.38293 * 120.10613 * 0.59759 * 21 20 19 23 23 C 1.38520 * 120.12933 * 359.67614 * 22 21 20 24 24 F 1.35101 * 119.98926 * 180.02562 * 23 22 21 25 25 C 1.38329 * 120.02312 * 0.02562 * 23 22 21 26 26 C 1.52993 * 117.50066 * 254.74665 * 6 5 2 27 27 C 1.52995 * 117.49872 * 186.12230 * 6 5 2 28 28 H 1.09001 * 109.46925 * 305.51445 * 1 2 3 29 29 H 1.09004 * 109.47187 * 65.51193 * 1 2 3 30 30 H 1.09004 * 109.47238 * 185.51387 * 1 2 3 31 31 H 1.08995 * 109.47531 * 293.76018 * 5 2 1 32 32 H 1.09002 * 109.47038 * 53.76436 * 5 2 1 33 33 H 1.09000 * 109.46764 * 187.23794 * 7 6 5 34 34 H 1.08998 * 109.47104 * 307.24118 * 7 6 5 35 35 H 0.96998 * 119.99714 * 185.03795 * 14 13 11 36 36 H 1.07993 * 120.01269 * 359.96749 * 20 19 10 37 37 H 1.08002 * 119.94796 * 180.29386 * 21 20 19 38 38 H 1.08000 * 119.94201 * 179.70201 * 22 21 20 39 39 H 1.07996 * 120.04904 * 180.02562 * 25 23 22 40 40 H 1.09005 * 117.50030 * 0.02562 * 26 6 5 41 41 H 1.09003 * 117.49981 * 145.02126 * 26 6 5 42 42 H 1.09002 * 117.49910 * 214.97921 * 27 6 5 43 43 H 1.08991 * 117.50285 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.6971 -0.9625 1.7348 7 6 4.5789 0.1551 1.1741 8 6 4.4152 1.3943 2.0159 9 8 3.3376 1.6557 2.5071 10 7 5.4662 2.2121 2.2228 11 6 5.9415 2.4097 3.4940 12 1 6.6788 3.1762 3.6818 13 6 5.4746 1.6241 4.5399 14 7 4.6994 0.5923 4.2914 15 14 5.9484 2.0340 6.2997 16 1 6.8230 3.2342 6.3101 17 1 4.7223 2.3076 7.0915 18 1 6.6772 0.8860 6.8964 19 6 6.0721 2.8589 1.1417 20 6 5.5220 2.7528 -0.1304 21 6 6.1185 3.3975 -1.1956 22 6 7.2696 4.1389 -1.0014 23 6 7.8246 4.2429 0.2634 24 9 8.9490 4.9683 0.4500 25 6 7.2280 3.6042 1.3357 26 6 4.2081 -2.3987 1.6046 27 6 4.2034 -1.7092 2.9704 28 1 -0.3633 0.5970 0.8365 29 1 -0.3634 0.4260 -0.9353 30 1 -0.3634 -1.0229 0.0987 31 1 1.8586 -0.0626 2.4064 32 1 1.6694 -1.6894 1.7093 33 1 5.6218 -0.1613 1.1922 34 1 4.2826 0.3714 0.1477 35 1 4.3141 0.0876 5.0246 36 1 4.6261 2.1699 -0.2846 37 1 5.6881 3.3188 -2.1831 38 1 7.7367 4.6382 -1.8375 39 1 7.6601 3.6853 2.3221 40 1 3.4697 -3.1821 1.4333 41 1 5.1727 -2.5477 1.1193 42 1 5.1650 -1.4046 3.3837 43 1 3.4621 -2.0386 3.6984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080927347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -61.928550 kcal Electronic energy + Delta-G solvation = -31355.395735 eV Core-core repulsion = 27024.118149 eV Total energy + Delta-G solvation = -4331.277586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.109 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.20168 -39.83761 -38.00474 -36.85535 -36.61249 -35.71460 -34.53697 -32.26692 -30.09524 -29.78864 -29.20069 -28.53420 -28.01276 -25.20454 -22.38344 -21.99455 -21.59844 -19.92681 -19.13485 -18.46988 -17.69017 -16.85027 -16.51197 -16.07348 -15.84139 -15.49796 -15.21021 -15.07176 -14.89703 -14.70779 -14.43200 -14.32400 -13.97770 -13.83096 -13.26344 -13.17674 -13.02050 -12.79182 -12.43945 -12.33561 -11.97597 -11.73590 -11.69074 -11.64966 -11.32064 -11.25617 -11.12151 -10.98768 -10.94717 -10.83147 -10.74647 -10.58882 -10.45158 -10.18867 -10.11249 -9.77789 -9.26142 -8.77856 -8.49760 -8.02736 -7.04643 -6.55943 -3.99428 0.21910 2.04970 2.15960 2.98906 3.07889 3.15143 3.18346 3.55273 3.82179 3.93886 4.11304 4.26380 4.45214 4.55380 4.77731 4.85631 4.89611 4.99678 5.13050 5.17482 5.25062 5.46817 5.56508 5.59924 5.60480 5.76968 5.86221 5.95136 6.02238 6.08371 6.13594 6.21415 6.27025 6.52681 6.55302 6.61312 6.82046 6.93726 6.96390 7.14163 7.20854 7.30734 7.62112 7.82548 8.56782 8.88199 9.14578 9.49820 10.49359 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.008860 B = 0.005565 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.408661 B = 5030.401674 C = 7221.576073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 2.410 3.590 3 O -0.922 6.922 4 O -0.947 6.947 5 C -0.554 4.554 6 C -0.087 4.087 7 C -0.120 4.120 8 C 0.598 3.402 9 O -0.467 6.467 10 N -0.452 5.452 11 C -0.315 4.315 12 H 0.106 0.894 13 C 0.029 3.971 14 N -0.858 5.858 15 Si 0.936 3.064 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.229 3.771 20 C -0.227 4.227 21 C -0.046 4.046 22 C -0.250 4.250 23 C 0.137 3.863 24 F -0.153 7.153 25 C -0.232 4.232 26 C -0.190 4.190 27 C -0.105 4.105 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.152 0.848 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.277 0.723 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -5.349 -5.256 9.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.592 3.408 3 O -0.919 6.919 4 O -0.944 6.944 5 C -0.684 4.684 6 C -0.089 4.089 7 C -0.161 4.161 8 C 0.388 3.612 9 O -0.335 6.335 10 N -0.154 5.154 11 C -0.441 4.441 12 H 0.123 0.877 13 C -0.176 4.176 14 N -0.496 5.496 15 Si 0.762 3.238 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.207 1.207 19 C 0.119 3.881 20 C -0.250 4.250 21 C -0.065 4.065 22 C -0.272 4.272 23 C 0.117 3.883 24 F -0.132 7.132 25 C -0.256 4.256 26 C -0.227 4.227 27 C -0.143 4.143 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.151 0.849 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.135 0.865 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.568 -5.229 -5.290 9.291 hybrid contribution -0.331 0.010 1.595 1.629 sum -5.899 -5.219 -3.695 8.700 Atomic orbital electron populations 1.30347 1.28534 1.10911 1.11486 1.08215 0.77690 0.76557 0.78320 1.93653 1.77874 1.34004 1.86365 1.93565 1.78808 1.67286 1.54749 1.29763 1.03144 1.12662 1.22809 1.20113 0.89275 0.92231 1.07269 1.21690 1.01742 0.94305 0.98366 1.19138 0.82468 0.82168 0.77385 1.90367 1.26832 1.72264 1.44064 1.41272 1.27756 1.41232 1.05181 1.19757 1.24447 1.17893 0.81998 0.87673 1.25213 0.97195 0.94507 1.00645 1.69484 1.31209 1.16065 1.32849 0.85705 0.78292 0.78502 0.81287 1.19324 1.20616 1.20662 1.17538 0.90720 0.93033 0.86857 1.20883 1.03954 1.08391 0.91775 1.20463 0.93737 0.94421 0.97860 1.20500 1.01359 1.10028 0.95344 1.17386 0.83441 0.93201 0.94295 1.91407 1.49811 1.75747 1.96222 1.20425 0.99070 1.07076 0.99018 1.23338 1.02592 0.93404 1.03339 1.22890 1.03943 0.98451 0.89014 0.85315 0.85695 0.85921 0.83052 0.86322 0.88788 0.90354 0.91085 0.85458 0.86284 0.86582 0.84862 0.89187 0.88717 0.86509 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.49 10.62 101.05 1.07 -5.41 16 2 S 2.41 35.17 4.24 -107.50 -0.46 34.71 16 3 O -0.92 -17.23 13.84 -64.33 -0.89 -18.12 16 4 O -0.95 -15.72 18.02 -57.83 -1.04 -16.77 16 5 C -0.55 -8.15 5.15 37.16 0.19 -7.96 16 6 C -0.09 -1.53 1.59 -154.51 -0.25 -1.77 16 7 C -0.12 -2.44 4.05 -27.88 -0.11 -2.55 16 8 C 0.60 14.18 2.32 -10.99 -0.03 14.15 16 9 O -0.47 -11.82 12.78 -9.52 -0.12 -11.94 16 10 N -0.45 -11.13 2.81 -58.99 -0.17 -11.29 16 11 C -0.32 -7.93 9.28 -14.94 -0.14 -8.07 16 12 H 0.11 2.56 5.91 -52.49 -0.31 2.25 16 13 C 0.03 0.71 5.26 -17.49 -0.09 0.62 16 14 N -0.86 -20.43 6.62 55.49 0.37 -20.06 16 15 Si 0.94 19.47 29.56 -169.99 -5.03 14.45 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 C 0.23 5.22 6.37 -83.70 -0.53 4.69 16 20 C -0.23 -4.77 8.87 -39.36 -0.35 -5.12 16 21 C -0.05 -0.83 10.04 -39.62 -0.40 -1.22 16 22 C -0.25 -4.49 10.02 -39.46 -0.40 -4.89 16 23 C 0.14 2.69 7.30 -39.44 -0.29 2.40 16 24 F -0.15 -2.90 17.27 2.25 0.04 -2.86 16 25 C -0.23 -4.98 9.25 -39.30 -0.36 -5.34 16 26 C -0.19 -2.81 9.86 -26.74 -0.26 -3.08 16 27 C -0.10 -1.78 7.90 -26.74 -0.21 -1.99 16 28 H 0.13 1.12 8.14 -51.92 -0.42 0.70 16 29 H 0.12 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.12 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.15 2.42 6.82 -51.93 -0.35 2.06 16 32 H 0.12 1.26 7.95 -51.92 -0.41 0.84 16 33 H 0.09 1.89 8.08 -51.93 -0.42 1.47 16 34 H 0.08 1.53 4.45 -51.93 -0.23 1.30 16 35 H 0.28 6.29 8.18 -40.82 -0.33 5.96 16 36 H 0.13 2.72 4.63 -52.49 -0.24 2.48 16 37 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 2.86 6.10 -52.49 -0.32 2.54 16 40 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.12 2.26 6.83 -51.93 -0.35 1.91 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -31.02 358.20 -9.20 -40.22 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.15 Total: 11.81 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -2.15 Total: -25.54 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.20 Total: -31.36 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -2.05 Total: -46.82 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.45 kcal Atomic # 16 Polarization: 35.17 SS G_CDS: -0.46 Total: 34.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.02 -9.20 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080927347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.710 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds