Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00257 * 2 1 4 4 H 1.48500 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47004 * 300.00403 * 3 2 1 6 6 H 1.48500 * 109.46641 * 60.00391 * 3 2 1 7 7 C 1.38814 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00692 * 197.58016 * 7 2 1 9 9 N 1.36946 * 119.99496 * 17.57708 * 7 2 1 10 10 C 1.46961 * 120.59476 * 28.16763 * 9 7 2 11 11 C 1.53375 * 108.63213 * 124.75181 * 10 9 7 12 12 N 1.46959 * 108.77542 * 49.33845 * 11 10 9 13 13 S 1.65605 * 120.59212 * 124.84120 * 12 11 10 14 14 O 1.42095 * 106.40289 * 203.53645 * 13 12 11 15 15 O 1.42101 * 106.40370 * 336.45566 * 13 12 11 16 16 N 1.65599 * 107.22101 * 89.99748 * 13 12 11 17 17 C 1.47428 * 125.64639 * 269.69813 * 16 13 12 18 18 C 1.55131 * 104.72320 * 155.81370 * 17 16 13 19 19 C 1.55154 * 101.48290 * 37.29180 * 18 17 16 20 20 C 1.47021 * 125.65180 * 89.99382 * 16 13 12 21 21 H 1.09005 * 109.87872 * 61.60645 * 20 16 13 22 22 C 1.50700 * 109.88248 * 300.44614 * 20 16 13 23 23 C 1.34519 * 125.78750 * 139.71211 * 22 20 16 24 24 C 1.41377 * 106.84067 * 179.88905 * 23 22 20 25 25 C 1.34519 * 106.83887 * 0.37090 * 24 23 22 26 26 O 1.34295 * 125.79312 * 320.02161 * 22 20 16 27 27 C 1.46992 * 118.79357 * 305.06945 * 12 11 10 28 28 C 1.46961 * 120.59178 * 208.14411 * 9 7 2 29 29 H 0.97003 * 120.00000 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.61068 * 5.00593 * 10 9 7 31 31 H 1.08996 * 109.75157 * 244.57832 * 10 9 7 32 32 H 1.09002 * 109.60787 * 169.16988 * 11 10 9 33 33 H 1.09000 * 109.60673 * 289.50530 * 11 10 9 34 34 H 1.09001 * 110.36108 * 274.74223 * 17 16 13 35 35 H 1.08999 * 110.37263 * 37.06163 * 17 16 13 36 36 H 1.08990 * 111.18918 * 279.18596 * 18 17 16 37 37 H 1.08998 * 110.93664 * 155.28416 * 18 17 16 38 38 H 1.09009 * 110.71878 * 205.96790 * 19 18 17 39 39 H 1.08999 * 110.87882 * 82.77055 * 19 18 17 40 40 H 1.08003 * 126.58030 * 0.02771 * 23 22 20 41 41 H 1.07997 * 126.58287 * 180.16267 * 24 23 22 42 42 H 1.07999 * 125.78709 * 179.79263 * 25 24 23 43 43 H 1.09000 * 109.47044 * 295.18763 * 27 12 11 44 44 H 1.08994 * 109.76071 * 174.83866 * 27 12 11 45 45 H 1.09002 * 109.61199 * 354.99483 * 28 9 7 46 46 H 1.09006 * 109.61391 * 115.33271 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0524 -1.2242 0.2819 9 7 1.3735 -2.3602 -0.3592 10 6 0.2386 -2.3316 -1.2925 11 6 0.5430 -3.2746 -2.4632 12 7 0.9849 -4.5689 -1.9255 13 16 0.2171 -5.9696 -2.3625 14 8 0.4675 -6.9056 -1.3231 15 8 -1.0909 -5.5982 -2.7753 16 7 0.9855 -6.5501 -3.7096 17 6 0.6332 -6.2296 -5.1049 18 6 1.9398 -6.4685 -5.9063 19 6 2.5207 -7.7138 -5.1858 20 6 2.1281 -7.4754 -3.7126 21 1 1.8421 -8.4189 -3.2477 22 6 3.2853 -6.8631 -2.9663 23 6 4.1129 -7.5127 -2.1280 24 6 5.0473 -6.5622 -1.6566 25 6 4.7298 -5.3868 -2.2286 26 8 3.6618 -5.5751 -3.0207 27 6 2.1175 -4.5969 -0.9889 28 6 1.8131 -3.6540 0.1818 29 1 -0.4850 0.8401 0.0004 30 1 0.0980 -1.3175 -1.6665 31 1 -0.6662 -2.6620 -0.7824 32 1 -0.3563 -3.4154 -3.0628 33 1 1.3319 -2.8468 -3.0818 34 1 -0.1576 -6.8914 -5.4580 35 1 0.3227 -5.1881 -5.1881 36 1 2.6153 -5.6174 -5.8213 37 1 1.7212 -6.6883 -6.9512 38 1 3.6047 -7.7517 -5.2947 39 1 2.0646 -8.6290 -5.5632 40 1 4.0727 -8.5600 -1.8672 41 1 5.8581 -6.7441 -0.9668 42 1 5.2463 -4.4506 -2.0767 43 1 3.0206 -4.2647 -1.5008 44 1 2.2610 -5.6104 -0.6144 45 1 2.7124 -3.5132 0.7815 46 1 1.0233 -4.0789 0.8013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084432383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -10.520027 kcal Electronic energy + Delta-G solvation = -32547.576185 eV Core-core repulsion = 28374.280896 eV Total energy + Delta-G solvation = -4173.295289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.62405 -38.63526 -37.49149 -37.02107 -35.56688 -33.75787 -33.00559 -31.12514 -31.08478 -31.01543 -30.10736 -27.55936 -26.36061 -23.33732 -22.86292 -22.84189 -21.90217 -21.58416 -20.50178 -19.94188 -18.84948 -17.90666 -17.63349 -16.97556 -16.30702 -16.14638 -15.70815 -15.36637 -14.75058 -14.37182 -14.21916 -14.04180 -13.74713 -13.61932 -13.53289 -13.49317 -13.21471 -12.85196 -12.73530 -12.68783 -12.44189 -12.08962 -11.95722 -11.86888 -11.68006 -11.55960 -11.36754 -11.31300 -11.10962 -11.08109 -10.80901 -10.66981 -10.35407 -10.18739 -9.92880 -9.83241 -9.72047 -9.29038 -8.72234 -8.49209 -8.32251 -6.65844 -5.81009 -3.24611 0.76986 1.72643 2.63464 2.97959 3.10595 3.34775 3.42779 3.44638 3.76336 4.16600 4.34117 4.46574 4.48869 4.69954 4.84011 5.02777 5.10508 5.13770 5.23378 5.28629 5.34450 5.47907 5.50104 5.54714 5.61345 5.64363 5.83111 5.84403 5.87478 5.95581 5.97408 6.02845 6.08666 6.16775 6.21205 6.26981 6.46890 6.50682 6.53281 6.72950 6.91206 7.01899 7.19576 7.35558 7.61218 7.76109 8.40557 9.16829 9.80103 10.38413 11.26618 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.004237 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.972004 B = 6606.968394 C = 7361.782816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.161 3.839 11 C 0.099 3.901 12 N -0.983 5.983 13 S 2.787 3.213 14 O -0.976 6.976 15 O -0.975 6.975 16 N -1.016 6.016 17 C 0.121 3.879 18 C -0.129 4.129 19 C -0.121 4.121 20 C 0.236 3.764 21 H 0.106 0.894 22 C -0.044 4.044 23 C -0.190 4.190 24 C -0.218 4.218 25 C -0.026 4.026 26 O -0.157 6.157 27 C 0.107 3.893 28 C 0.134 3.866 29 H 0.254 0.746 30 H 0.099 0.901 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.202 0.798 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 -15.869 -12.159 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.034 3.966 11 C -0.028 4.028 12 N -0.825 5.825 13 S 2.799 3.201 14 O -0.960 6.960 15 O -0.960 6.960 16 N -0.853 5.853 17 C -0.004 4.004 18 C -0.167 4.167 19 C -0.160 4.160 20 C 0.129 3.871 21 H 0.124 0.876 22 C -0.096 4.096 23 C -0.210 4.210 24 C -0.237 4.237 25 C -0.094 4.094 26 O -0.052 6.052 27 C -0.020 4.020 28 C 0.006 3.994 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.774 -15.879 -11.817 20.921 hybrid contribution 0.929 1.007 0.157 1.380 sum 7.703 -14.872 -11.660 20.407 Atomic orbital electron populations 1.70036 1.05286 1.25518 1.53648 1.25060 0.95253 0.98457 1.00841 0.86227 0.79290 0.83958 0.77278 1.20310 1.21566 1.21755 1.19219 0.92757 0.84738 1.41480 0.91555 1.43923 1.36544 1.01331 1.49155 1.21120 0.89159 0.98432 0.87921 1.22287 0.98436 0.83410 0.98680 1.57633 1.47266 1.20863 1.56730 1.01848 0.73219 0.72930 0.72152 1.93564 1.86078 1.62069 1.54314 1.93584 1.35638 1.83651 1.83078 1.59552 1.45071 1.59766 1.20927 1.22025 0.97135 1.01248 0.79991 1.22825 0.96629 0.98285 0.98999 1.22716 1.02070 0.99076 0.92116 1.19780 0.80202 0.91184 0.95924 0.87592 1.22803 1.00671 0.82814 1.03337 1.21546 0.97673 1.01111 1.00625 1.21775 1.03381 0.92967 1.05571 1.24048 0.89444 1.00502 0.95454 1.84169 1.39221 1.27116 1.54726 1.22201 0.88126 1.00230 0.91465 1.21237 0.98194 0.87350 0.92625 0.93553 0.88284 0.95843 0.90760 0.92222 0.91130 0.90488 0.90233 0.89891 0.89783 0.89797 0.83587 0.83504 0.78144 0.91294 0.90939 0.91807 0.95992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.20 55.49 0.62 -25.28 16 2 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 3 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.75 9.58 -15.05 -0.14 -6.90 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.63 2.97 -172.03 -0.51 -15.14 16 10 C 0.16 3.89 5.52 -3.60 -0.02 3.87 16 11 C 0.10 1.93 6.62 -3.60 -0.02 1.90 16 12 N -0.98 -18.25 3.33 -113.24 -0.38 -18.62 16 13 S 2.79 49.42 6.06 -107.50 -0.65 48.77 16 14 O -0.98 -19.15 16.32 -57.17 -0.93 -20.09 16 15 O -0.98 -19.55 16.31 -57.17 -0.93 -20.48 16 16 N -1.02 -13.49 3.46 -105.51 -0.36 -13.86 16 17 C 0.12 1.28 6.99 -2.41 -0.02 1.26 16 18 C -0.13 -1.04 7.10 -24.46 -0.17 -1.21 16 19 C -0.12 -0.94 6.48 -24.90 -0.16 -1.10 16 20 C 0.24 2.62 3.31 -68.11 -0.23 2.40 16 21 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.04 -0.55 5.14 -35.62 -0.18 -0.73 16 23 C -0.19 -2.21 10.80 -39.70 -0.43 -2.64 16 24 C -0.22 -2.43 10.91 -39.70 -0.43 -2.86 16 25 C -0.03 -0.31 9.64 29.42 0.28 -0.03 16 26 O -0.16 -2.09 8.55 5.75 0.05 -2.04 16 27 C 0.11 1.96 4.59 -3.58 -0.02 1.94 16 28 C 0.13 2.90 6.68 -3.60 -0.02 2.87 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.10 2.59 5.99 -51.93 -0.31 2.28 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.36 6.93 -51.93 -0.36 1.00 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.62 7.82 -51.92 -0.41 0.21 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.07 1.19 4.68 -51.93 -0.24 0.95 16 44 H 0.07 1.30 6.80 -51.93 -0.35 0.95 16 45 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -33.75 371.15 -10.89 -44.64 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.71 Total: 1.52 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.65 Total: -1.23 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -0.63 Total: -72.89 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.82 Total: -42.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.65 Total: 48.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.75 -10.89 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084432383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.123 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds