Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00489 * 2 1 4 4 H 1.48498 * 109.47588 * 270.00778 * 3 2 1 5 5 H 1.48504 * 109.46823 * 30.00529 * 3 2 1 6 6 H 1.48492 * 109.47493 * 150.00017 * 3 2 1 7 7 C 1.38814 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99952 * 197.55732 * 7 2 1 9 9 N 1.36935 * 120.00288 * 17.55383 * 7 2 1 10 10 C 1.46961 * 120.59439 * 208.16293 * 9 7 2 11 11 C 1.53368 * 108.63414 * 235.24584 * 10 9 7 12 12 N 1.46964 * 108.63718 * 310.57257 * 11 10 9 13 13 S 1.65600 * 120.59782 * 235.20569 * 12 11 10 14 14 O 1.42102 * 106.39836 * 336.46025 * 13 12 11 15 15 O 1.42101 * 106.39886 * 203.53799 * 13 12 11 16 16 N 1.65595 * 107.21640 * 89.99878 * 13 12 11 17 17 C 1.47433 * 125.64961 * 269.97239 * 16 13 12 18 18 C 1.54911 * 104.83133 * 155.89570 * 17 16 13 19 19 C 1.55158 * 101.58155 * 37.01207 * 18 17 16 20 20 C 1.47026 * 125.64688 * 90.00227 * 16 13 12 21 21 H 1.08991 * 110.01244 * 300.52097 * 20 16 13 22 22 C 1.50698 * 109.88288 * 61.62179 * 20 16 13 23 23 C 1.34513 * 125.78722 * 219.26369 * 22 20 16 24 24 C 1.41383 * 106.84221 * 179.97438 * 23 22 20 25 25 C 1.34513 * 106.83950 * 359.97438 * 24 23 22 26 26 O 1.34298 * 108.42136 * 0.26624 * 25 24 23 27 27 C 1.46962 * 118.80659 * 55.47849 * 12 11 10 28 28 C 1.46960 * 120.59367 * 28.18108 * 9 7 2 29 29 H 0.97010 * 120.00111 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.61472 * 115.50072 * 10 9 7 31 31 H 1.09003 * 109.61250 * 354.99149 * 10 9 7 32 32 H 1.09011 * 109.61068 * 190.83068 * 11 10 9 33 33 H 1.09003 * 109.75304 * 70.40760 * 11 10 9 34 34 H 1.08992 * 110.36157 * 37.05713 * 17 16 13 35 35 H 1.08995 * 110.36508 * 274.73716 * 17 16 13 36 36 H 1.09001 * 111.00712 * 278.93936 * 18 17 16 37 37 H 1.08997 * 111.00219 * 155.08754 * 18 17 16 38 38 H 1.09001 * 110.71970 * 206.13334 * 19 18 17 39 39 H 1.09003 * 110.72324 * 82.85982 * 19 18 17 40 40 H 1.08001 * 126.57839 * 359.94061 * 23 22 20 41 41 H 1.07995 * 126.58362 * 179.97438 * 24 23 22 42 42 H 1.08002 * 125.79374 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.61548 * 64.26773 * 27 12 11 44 44 H 1.09005 * 109.60842 * 184.77925 * 27 12 11 45 45 H 1.09002 * 109.61116 * 244.49822 * 28 9 7 46 46 H 1.09005 * 109.61283 * 5.01157 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0524 -1.2242 0.2816 9 7 1.3733 -2.3603 -0.3587 10 6 1.8128 -3.6539 0.1828 11 6 2.1169 -4.5972 -0.9876 12 7 0.9819 -4.5690 -1.9207 13 16 0.2124 -5.9696 -2.3547 14 8 1.1468 -7.0206 -2.1504 15 8 -0.4091 -5.7146 -3.6069 16 7 -1.0115 -6.2139 -1.2663 17 6 -0.9010 -6.9672 -0.0037 18 6 -2.0304 -6.4036 0.8944 19 6 -3.1612 -6.1640 -0.1407 20 6 -2.3885 -5.7161 -1.3993 21 1 -2.3870 -4.6282 -1.4658 22 6 -3.0293 -6.3038 -2.6302 23 6 -3.8463 -5.6537 -3.4783 24 6 -4.2114 -6.5776 -4.4843 25 6 -3.5954 -7.7368 -4.1910 26 8 -2.8852 -7.5667 -3.0640 27 6 0.5460 -3.2760 -2.4665 28 6 0.2383 -2.3320 -1.2918 29 1 -0.4851 0.8401 0.0004 30 1 1.0219 -4.0799 0.8001 31 1 2.7122 -3.5130 0.7823 32 1 2.2575 -5.6113 -0.6131 33 1 3.0207 -4.2683 -1.5006 34 1 0.0717 -6.7947 0.4568 35 1 -1.0538 -8.0315 -0.1824 36 1 -1.7261 -5.4682 1.3641 37 1 -2.3350 -7.1342 1.6437 38 1 -3.8344 -5.3768 0.1989 39 1 -3.7100 -7.0860 -0.3328 40 1 -4.1629 -4.6238 -3.4046 41 1 -4.8605 -6.3889 -5.3266 42 1 -3.6642 -8.6509 -4.7622 43 1 1.3398 -2.8521 -3.0817 44 1 -0.3514 -3.4172 -3.0691 45 1 -0.6648 -2.6639 -0.7796 46 1 0.0977 -1.3180 -1.6663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084432384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -16.355954 kcal Electronic energy + Delta-G solvation = -32013.721267 eV Core-core repulsion = 27840.172913 eV Total energy + Delta-G solvation = -4173.548354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.46693 -38.51627 -37.59853 -37.03123 -35.57451 -33.82817 -32.94230 -31.13279 -31.08130 -30.94559 -30.17632 -27.42092 -26.42028 -23.34358 -22.90743 -22.84800 -21.68539 -21.51638 -20.55365 -19.96906 -18.71630 -18.09923 -17.37296 -16.97212 -16.26895 -16.09910 -15.81179 -15.41022 -14.85584 -14.47977 -14.10013 -13.95324 -13.69856 -13.64159 -13.54297 -13.40020 -13.10569 -12.94245 -12.78632 -12.70345 -12.43275 -12.10661 -12.01378 -11.86548 -11.62575 -11.46132 -11.40782 -11.22614 -11.15543 -10.88829 -10.84402 -10.77597 -10.45120 -10.26292 -9.99629 -9.81565 -9.78942 -9.18481 -8.78264 -8.51250 -8.33181 -6.73740 -5.87673 -3.31229 0.77211 1.82468 2.71316 2.96899 3.18417 3.33384 3.41141 3.41472 3.74042 4.25224 4.42640 4.47883 4.57371 4.81412 4.92145 5.09931 5.11949 5.14690 5.24314 5.28793 5.41812 5.47640 5.58703 5.69744 5.72144 5.74127 5.77625 5.87642 5.89675 5.93811 6.01793 6.07573 6.14657 6.16884 6.24621 6.25312 6.34260 6.45025 6.60550 6.63900 6.78445 6.93047 7.23672 7.24552 7.50662 7.71557 8.34388 9.10877 9.73704 10.30653 11.19983 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.003703 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.069332 B = 7560.279793 C = 7873.274305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.134 3.866 11 C 0.104 3.896 12 N -0.994 5.994 13 S 2.792 3.208 14 O -0.982 6.982 15 O -0.968 6.968 16 N -1.012 6.012 17 C 0.123 3.877 18 C -0.129 4.129 19 C -0.119 4.119 20 C 0.235 3.765 21 H 0.109 0.891 22 C -0.016 4.016 23 C -0.195 4.195 24 C -0.210 4.210 25 C -0.046 4.046 26 O -0.170 6.170 27 C 0.095 3.905 28 C 0.161 3.839 29 H 0.255 0.745 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.198 0.802 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.022 0.978 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 -14.083 -1.980 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.006 3.994 11 C -0.023 4.023 12 N -0.835 5.835 13 S 2.803 3.197 14 O -0.966 6.966 15 O -0.952 6.952 16 N -0.849 5.849 17 C -0.002 4.002 18 C -0.168 4.168 19 C -0.158 4.158 20 C 0.128 3.872 21 H 0.126 0.874 22 C -0.068 4.068 23 C -0.215 4.215 24 C -0.229 4.229 25 C -0.114 4.114 26 O -0.066 6.066 27 C -0.031 4.031 28 C 0.033 3.967 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.215 0.785 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.560 -14.704 -2.613 16.739 hybrid contribution 0.176 1.273 -0.061 1.286 sum -7.384 -13.431 -2.674 15.559 Atomic orbital electron populations 1.70008 1.05268 1.25660 1.53651 1.25028 0.95286 0.98449 1.00670 0.86277 0.79126 0.83518 0.77746 1.21393 1.21774 1.20437 1.19210 0.92844 0.84784 1.41577 0.91540 1.43881 1.36619 1.01344 1.49169 1.21258 0.98186 0.87412 0.92535 1.22018 0.88128 1.00162 0.91985 1.57852 1.43841 1.22484 1.59372 1.01669 0.72136 0.72967 0.72962 1.93564 1.61607 1.54906 1.86494 1.93603 1.76793 1.85615 1.39189 1.59316 1.21833 1.66816 1.36945 1.21963 0.99898 0.95459 0.82883 1.22821 0.94491 1.02396 0.97098 1.22700 0.97693 1.02564 0.92824 1.19828 0.80348 0.97621 0.89404 0.87350 1.22726 1.01924 0.82960 0.99193 1.21508 1.02851 1.01096 0.96005 1.21748 1.05493 0.93650 1.02041 1.23952 0.97408 1.00932 0.89061 1.83973 1.57255 1.29741 1.35627 1.22407 0.99242 0.83390 0.98108 1.21234 0.89019 0.98627 0.87803 0.93534 0.95968 0.91684 0.90750 0.91421 0.90461 0.91422 0.89699 0.89834 0.89313 0.90346 0.83410 0.83668 0.78498 0.91637 0.90748 0.95977 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.67 11.20 55.49 0.62 -24.05 16 2 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 3 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.61 9.57 -15.06 -0.14 -6.75 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -13.76 2.97 -171.77 -0.51 -14.27 16 10 C 0.13 2.59 6.67 -3.60 -0.02 2.57 16 11 C 0.10 1.81 6.55 -3.60 -0.02 1.78 16 12 N -0.99 -17.75 3.32 -113.00 -0.37 -18.12 16 13 S 2.79 48.92 6.32 -107.50 -0.68 48.25 16 14 O -0.98 -18.87 16.41 -57.17 -0.94 -19.81 16 15 O -0.97 -18.94 15.13 -57.17 -0.87 -19.80 16 16 N -1.01 -14.70 3.44 -105.63 -0.36 -15.06 16 17 C 0.12 1.46 6.98 -2.52 -0.02 1.45 16 18 C -0.13 -1.25 7.09 -24.58 -0.17 -1.43 16 19 C -0.12 -1.20 6.47 -24.89 -0.16 -1.36 16 20 C 0.23 3.11 3.52 -68.10 -0.24 2.87 16 21 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 22 C -0.02 -0.23 4.53 -35.63 -0.16 -0.39 16 23 C -0.19 -2.65 10.80 -39.70 -0.43 -3.08 16 24 C -0.21 -2.60 10.91 -39.70 -0.43 -3.03 16 25 C -0.05 -0.56 12.09 29.42 0.36 -0.21 16 26 O -0.17 -2.53 10.65 5.72 0.06 -2.46 16 27 C 0.10 1.80 6.58 -3.37 -0.02 1.78 16 28 C 0.16 3.55 5.53 -3.37 -0.02 3.53 16 29 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 32 H 0.07 1.15 7.09 -51.92 -0.37 0.78 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.76 7.84 -51.93 -0.41 0.35 16 40 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.32 7.08 -51.93 -0.37 0.95 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 2.43 5.99 -51.93 -0.31 2.12 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -33.03 380.27 -10.84 -43.86 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.91 Total: 2.13 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.58 Total: -2.24 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -0.63 Total: -71.51 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.74 Total: -42.07 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Atomic # 16 Polarization: 48.92 SS G_CDS: -0.68 Total: 48.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.03 -10.84 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084432384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.507 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds