Wall clock time and date at job start Tue Mar 31 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31056 * 1 3 3 Si 1.86797 * 119.99822 * 2 1 4 4 H 1.48500 * 109.47459 * 274.98670 * 3 2 1 5 5 H 1.48503 * 109.47444 * 34.98729 * 3 2 1 6 6 H 1.48500 * 109.47116 * 154.98497 * 3 2 1 7 7 C 1.39356 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99989 * 186.24877 * 7 2 1 9 9 N 1.36609 * 119.99726 * 6.25371 * 7 2 1 10 10 N 1.39652 * 119.96611 * 353.29719 * 9 7 2 11 11 C 1.31565 * 121.40758 * 179.50868 * 10 9 7 12 12 C 1.39717 * 119.91170 * 359.42862 * 11 10 9 13 13 C 1.36794 * 119.77548 * 1.17625 * 12 11 10 14 14 C 1.34842 * 119.96543 * 173.28521 * 9 7 2 15 15 O 1.22013 * 120.43099 * 0.93533 * 14 9 7 16 16 C 1.50393 * 122.19221 * 181.66436 * 12 11 10 17 17 N 1.46700 * 109.78655 * 348.37391 * 16 12 11 18 18 C 1.34779 * 121.27159 * 224.67195 * 17 16 12 19 19 O 1.21514 * 120.00180 * 179.71214 * 18 17 16 20 20 O 1.34641 * 119.99470 * 359.71600 * 18 17 16 21 21 C 1.45199 * 116.99854 * 179.97438 * 20 18 17 22 22 C 1.50692 * 109.47294 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99926 * 269.72657 * 22 21 20 24 24 C 1.38243 * 119.99894 * 179.76484 * 23 22 21 25 25 C 1.38239 * 119.99786 * 0.48647 * 24 23 22 26 26 C 1.38231 * 119.99815 * 359.79112 * 25 24 23 27 27 C 1.38232 * 120.00635 * 359.95367 * 26 25 24 28 28 C 1.47187 * 117.46688 * 44.39708 * 17 16 12 29 29 C 1.50662 * 117.56801 * 179.28794 * 11 10 9 30 30 H 0.96999 * 119.99835 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.15593 * 179.28713 * 13 12 11 32 32 H 1.09000 * 109.42215 * 228.23577 * 16 12 11 33 33 H 1.09006 * 109.28586 * 108.42848 * 16 12 11 34 34 H 1.08998 * 109.47210 * 299.99973 * 21 20 18 35 35 H 1.09000 * 109.47264 * 59.99805 * 21 20 18 36 36 H 1.08002 * 120.00330 * 0.02562 * 23 22 21 37 37 H 1.07995 * 120.00138 * 180.25638 * 24 23 22 38 38 H 1.08000 * 120.00009 * 179.76795 * 25 24 23 39 39 H 1.08003 * 119.99752 * 179.97438 * 26 25 24 40 40 H 1.08000 * 120.00262 * 180.02562 * 27 26 25 41 41 H 1.08998 * 109.73922 * 55.16464 * 28 17 16 42 42 H 1.08998 * 109.74513 * 175.82828 * 28 17 16 43 43 H 1.09003 * 109.21511 * 39.23716 * 29 11 10 44 44 H 1.08998 * 109.21649 * 279.90607 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 2.3866 2.1073 -1.3947 5 1 1.4986 2.6200 0.8028 6 1 3.5908 1.4121 0.5920 7 6 2.0074 -1.2069 0.0005 8 1 3.0825 -1.2096 0.1023 9 7 1.3304 -2.3864 -0.1278 10 7 -0.0661 -2.3938 -0.1187 11 6 -0.7467 -3.5121 -0.2498 12 6 -0.0709 -4.7238 -0.4141 13 6 1.2969 -4.7443 -0.4137 14 6 2.0112 -3.5424 -0.2634 15 8 3.2313 -3.5456 -0.2554 16 6 -0.7972 -6.0268 -0.6052 17 7 -2.2236 -5.8477 -0.3130 18 6 -2.9026 -6.7417 0.4328 19 8 -4.0826 -6.5679 0.6649 20 8 -2.2733 -7.8274 0.9207 21 6 -3.0666 -8.7473 1.7161 22 6 -2.2005 -9.8930 2.1721 23 6 -2.0931 -11.0306 1.3940 24 6 -1.2947 -12.0797 1.8099 25 6 -0.6116 -11.9952 3.0088 26 6 -0.7235 -10.8600 3.7895 27 6 -1.5177 -9.8088 3.3711 28 6 -2.8837 -4.6514 -0.8602 29 6 -2.2501 -3.4219 -0.2113 30 1 -0.4850 0.8400 0.0004 31 1 1.8255 -5.6790 -0.5288 32 1 -0.3802 -6.7762 0.0675 33 1 -0.6767 -6.3582 -1.6366 34 1 -3.4659 -8.2248 2.5854 35 1 -3.8897 -9.1318 1.1137 36 1 -2.6297 -11.0980 0.4591 37 1 -1.2075 -12.9667 1.2001 38 1 0.0092 -12.8163 3.3356 39 1 -0.1902 -10.7942 4.7264 40 1 -1.6048 -8.9217 3.9810 41 1 -2.7399 -4.6130 -1.9400 42 1 -3.9490 -4.6816 -0.6316 43 1 -2.5698 -2.5284 -0.7476 44 1 -2.5790 -3.3539 0.8257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084539403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:50 Heat of formation + Delta-G solvation = -6.871170 kcal Electronic energy + Delta-G solvation = -30629.658691 eV Core-core repulsion = 26321.077676 eV Total energy + Delta-G solvation = -4308.581014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.64437 -39.76017 -39.31308 -37.62616 -36.18773 -35.29633 -34.10675 -32.53164 -32.10198 -31.79780 -31.17295 -29.03011 -27.48094 -26.68914 -24.92978 -23.78070 -22.85740 -22.27589 -21.67917 -21.25531 -19.86180 -18.60032 -18.16810 -17.39527 -16.71642 -16.65234 -16.19218 -15.55096 -15.47032 -15.37902 -14.95110 -14.73429 -14.51568 -14.33080 -13.86174 -13.81861 -13.64331 -13.51860 -13.13787 -12.90824 -12.64227 -12.44302 -12.29892 -12.25997 -12.03406 -11.64868 -11.53649 -11.35843 -11.35642 -11.26697 -10.88946 -10.69651 -10.66401 -10.65079 -10.47020 -9.75471 -9.43574 -9.18073 -9.14547 -8.88629 -8.67846 -8.23069 -7.50007 -6.88087 -4.43121 0.89093 1.14388 1.66613 2.27668 2.87877 2.90856 2.92995 2.97236 2.99977 3.49549 3.56021 4.00647 4.01465 4.28645 4.51703 4.54670 4.74207 4.85724 4.99497 5.01908 5.09575 5.17161 5.25340 5.31699 5.33401 5.38168 5.54079 5.61518 5.66947 5.68128 5.76872 5.86201 5.94386 6.08557 6.15396 6.23610 6.25930 6.30087 6.32487 6.50904 6.54432 6.69969 6.77712 7.00089 7.23447 7.27872 7.47843 7.60559 8.02660 8.34831 8.47636 9.26704 9.62222 9.94045 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.002428 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.219861 B =11527.417929 C =12606.553277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.031 3.969 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.244 4.244 8 H 0.138 0.862 9 N -0.179 5.179 10 N -0.191 5.191 11 C 0.004 3.996 12 C -0.117 4.117 13 C -0.235 4.235 14 C 0.415 3.585 15 O -0.610 6.610 16 C 0.167 3.833 17 N -0.588 5.588 18 C 0.655 3.345 19 O -0.579 6.579 20 O -0.362 6.362 21 C 0.129 3.871 22 C -0.097 4.097 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.092 4.092 28 C 0.133 3.867 29 C -0.050 4.050 30 H 0.282 0.718 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 -15.176 2.403 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.189 4.189 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.383 4.383 8 H 0.155 0.845 9 N 0.023 4.977 10 N -0.022 5.022 11 C -0.151 4.151 12 C -0.127 4.127 13 C -0.266 4.266 14 C 0.225 3.775 15 O -0.500 6.500 16 C 0.044 3.956 17 N -0.327 5.327 18 C 0.410 3.590 19 O -0.469 6.469 20 O -0.276 6.276 21 C 0.055 3.945 22 C -0.097 4.097 23 C -0.112 4.112 24 C -0.143 4.143 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.110 4.110 28 C 0.011 3.989 29 C -0.091 4.091 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.332 -14.260 2.632 16.724 hybrid contribution 0.525 -0.199 -0.067 0.566 sum -7.806 -14.459 2.565 16.631 Atomic orbital electron populations 1.70182 1.06626 1.28977 1.29982 1.25964 0.95874 1.01057 0.96021 0.85628 0.79928 0.78509 0.79384 1.19114 1.19647 1.18065 1.20782 0.94321 0.81092 1.42145 0.84497 1.46195 1.03186 1.08104 1.40210 1.76730 0.88005 1.21368 1.16080 1.21334 0.95918 0.89395 1.08482 1.19824 0.93957 0.94267 1.04695 1.21522 0.92932 0.98215 1.13934 1.17282 0.88700 0.84493 0.87073 1.90756 1.12628 1.86088 1.60525 1.20330 0.78074 0.95819 1.01396 1.46880 1.10873 1.22775 1.52214 1.17867 0.83416 0.79701 0.78009 1.90962 1.14770 1.77895 1.63299 1.86322 1.43271 1.32949 1.65057 1.21669 0.91507 0.86703 0.94664 1.19552 1.00034 0.94532 0.95626 1.21105 0.98111 0.93080 0.98879 1.21159 0.97458 0.98877 0.96820 1.21246 0.98849 0.98008 0.94733 1.21184 0.99035 0.93714 1.00220 1.21154 0.95323 0.98640 0.95882 1.21713 0.97921 0.81509 0.97742 1.20205 0.89049 0.97772 1.02025 0.90722 0.85282 0.88731 0.90583 0.90249 0.90295 0.85745 0.85772 0.85898 0.85689 0.85624 0.90265 0.88152 0.88908 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -17.63 11.33 55.51 0.63 -17.00 16 2 C 0.03 0.73 5.49 -17.47 -0.10 0.63 16 3 Si 0.94 17.72 29.56 -169.99 -5.02 12.70 16 4 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.24 -6.42 9.63 -15.01 -0.14 -6.57 16 8 H 0.14 3.60 7.19 -52.49 -0.38 3.22 16 9 N -0.18 -4.84 3.61 -13.79 -0.05 -4.89 16 10 N -0.19 -4.79 8.71 33.74 0.29 -4.49 16 11 C 0.00 0.08 6.74 -82.17 -0.55 -0.47 16 12 C -0.12 -2.37 5.81 -104.74 -0.61 -2.98 16 13 C -0.24 -5.34 9.58 -39.21 -0.38 -5.71 16 14 C 0.42 11.23 7.45 -15.33 -0.11 11.11 16 15 O -0.61 -18.03 16.73 4.91 0.08 -17.94 16 16 C 0.17 2.65 6.17 -5.23 -0.03 2.62 16 17 N -0.59 -9.20 2.94 -180.45 -0.53 -9.73 16 18 C 0.66 10.50 8.45 54.06 0.46 10.95 16 19 O -0.58 -10.21 15.61 -19.28 -0.30 -10.51 16 20 O -0.36 -5.22 8.96 -40.33 -0.36 -5.58 16 21 C 0.13 1.50 5.60 36.00 0.20 1.70 16 22 C -0.10 -1.03 5.52 -104.63 -0.58 -1.61 16 23 C -0.09 -0.88 9.70 -39.58 -0.38 -1.26 16 24 C -0.13 -1.05 10.05 -39.58 -0.40 -1.44 16 25 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 27 C -0.09 -0.93 9.70 -39.58 -0.38 -1.31 16 28 C 0.13 1.92 6.42 -3.78 -0.02 1.89 16 29 C -0.05 -0.86 6.10 -28.01 -0.17 -1.03 16 30 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 31 H 0.13 2.63 8.05 -52.49 -0.42 2.21 16 32 H 0.09 1.46 7.10 -51.93 -0.37 1.09 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.10 1.37 7.06 -51.93 -0.37 1.00 16 43 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.85 378.00 -8.88 -41.73 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.31 Total: 6.33 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -4.00 Total: 3.70 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.34 Total: -36.12 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.58 Total: -34.04 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.02 Total: 12.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.85 -8.88 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084539403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.855 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds