Wall clock time and date at job start Tue Mar 31 2020 05:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86797 * 119.99827 * 2 1 4 4 H 1.48500 * 109.46965 * 239.99907 * 3 2 1 5 5 H 1.48497 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47151 * 119.99950 * 3 2 1 7 7 C 1.38886 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99781 * 159.45892 * 7 2 1 9 9 N 1.37134 * 120.00459 * 339.46070 * 7 2 1 10 10 C 1.34777 * 120.00309 * 160.44777 * 9 7 2 11 11 O 1.21285 * 120.00331 * 184.19284 * 10 9 7 12 12 C 1.50702 * 119.99963 * 4.19453 * 10 9 7 13 13 N 1.46502 * 109.47103 * 180.02562 * 12 10 9 14 14 S 1.69294 * 125.67168 * 264.69114 * 13 12 10 15 15 C 1.76485 * 96.55314 * 179.97438 * 14 13 12 16 16 C 1.38991 * 132.91099 * 180.02562 * 15 14 13 17 17 C 1.37732 * 119.70280 * 180.31974 * 16 15 14 18 18 C 1.38889 * 119.98012 * 0.02981 * 17 16 15 19 19 C 1.36145 * 121.06758 * 359.97438 * 18 17 16 20 20 C 1.40559 * 106.27406 * 0.32146 * 15 14 13 21 21 C 1.33278 * 125.67330 * 85.00126 * 13 12 10 22 22 O 1.21897 * 121.68348 * 359.97438 * 21 13 12 23 23 C 1.39793 * 119.99955 * 340.44740 * 9 7 2 24 24 C 1.38960 * 120.07434 * 288.66275 * 23 9 7 25 25 C 1.38084 * 119.91984 * 180.29869 * 24 23 9 26 26 C 1.38310 * 120.07914 * 359.97293 * 25 24 23 27 27 C 1.38310 * 120.15227 * 0.02562 * 26 25 24 28 28 C 1.38077 * 120.08028 * 0.02562 * 27 26 25 29 29 H 0.96998 * 120.00649 * 5.09267 * 1 2 3 30 30 H 1.08995 * 109.47183 * 299.99914 * 12 10 9 31 31 H 1.09004 * 109.46972 * 59.99881 * 12 10 9 32 32 H 1.07995 * 120.15056 * 0.36971 * 16 15 14 33 33 H 1.08001 * 120.00991 * 179.97438 * 17 16 15 34 34 H 1.07994 * 119.47030 * 179.97438 * 18 17 16 35 35 H 1.08006 * 119.78390 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.04306 * 0.24753 * 24 23 9 37 37 H 1.08006 * 119.96128 * 179.97438 * 25 24 23 38 38 H 1.07995 * 119.92261 * 179.97438 * 26 25 24 39 39 H 1.08000 * 119.95882 * 179.97438 * 27 26 25 40 40 H 1.08004 * 120.03739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0372 -1.2327 -0.3277 9 7 1.3884 -2.3525 0.4177 10 6 1.8872 -3.5537 0.0643 11 8 1.2972 -4.5687 0.3685 12 6 3.1781 -3.6356 -0.7090 13 7 3.5032 -5.0402 -0.9692 14 16 4.5284 -6.0064 -0.0305 15 6 4.3666 -7.4725 -0.9995 16 6 4.9107 -8.7465 -0.8865 17 6 4.5979 -9.7077 -1.8220 18 6 3.7427 -9.4013 -2.8726 19 6 3.2011 -8.1585 -2.9982 20 6 3.4996 -7.1512 -2.0582 21 6 3.0456 -5.7682 -1.9875 22 8 2.2864 -5.3005 -2.8186 23 6 0.2388 -2.2787 1.2096 24 6 0.3303 -1.8656 2.5332 25 6 -0.8065 -1.7998 3.3144 26 6 -2.0352 -2.1438 2.7806 27 6 -2.1299 -2.5554 1.4636 28 6 -0.9972 -2.6246 0.6770 29 1 -0.4851 0.8367 -0.0746 30 1 3.0685 -3.1070 -1.6559 31 1 3.9792 -3.1783 -0.1282 32 1 5.5752 -8.9819 -0.0683 33 1 5.0182 -10.6991 -1.7392 34 1 3.5033 -10.1611 -3.6018 35 1 2.5382 -7.9430 -3.8231 36 1 1.2895 -1.5972 2.9508 37 1 -0.7360 -1.4792 4.3433 38 1 -2.9225 -2.0918 3.3940 39 1 -3.0909 -2.8237 1.0502 40 1 -1.0719 -2.9465 -0.3512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084549094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:30 Heat of formation + Delta-G solvation = 30.460356 kcal Electronic energy + Delta-G solvation = -28125.252410 eV Core-core repulsion = 24190.635899 eV Total energy + Delta-G solvation = -3934.616510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.42397 -39.43169 -38.28790 -37.22433 -34.97015 -34.50051 -32.01610 -31.79815 -31.13030 -29.94202 -29.38267 -27.37300 -25.06731 -23.77343 -23.00638 -21.80186 -21.54259 -20.73586 -19.42985 -18.76671 -17.88219 -16.94510 -16.77503 -16.06484 -15.69560 -15.50164 -15.13450 -14.89936 -14.65667 -14.55172 -14.30107 -14.07323 -13.74485 -13.36936 -13.29764 -12.94218 -12.66720 -12.49894 -12.42570 -11.75102 -11.70968 -11.63747 -11.40793 -11.19195 -11.06130 -10.93513 -10.84129 -10.60754 -10.43978 -10.32540 -9.81219 -9.63826 -9.44735 -9.18318 -8.65116 -8.31680 -7.92225 -7.51452 -7.20658 -6.41372 -4.13576 0.55437 0.88372 1.10304 1.66895 2.37720 2.44727 2.80773 3.02904 3.13421 3.14439 3.52936 3.60227 3.70034 3.95741 4.46655 4.55461 4.72376 4.75962 4.97526 5.03624 5.12539 5.24592 5.44370 5.64256 5.72183 5.74686 5.77970 5.83638 5.86606 5.90008 5.98897 6.09302 6.23233 6.37336 6.51836 6.59595 6.72203 6.75349 6.97922 7.20226 7.27890 7.40186 7.54067 7.69497 7.89881 8.02039 8.30673 8.87071 9.20971 9.64277 10.50304 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.003259 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.555242 B = 8590.663450 C = 9450.443214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.053 3.947 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.403 5.403 10 C 0.448 3.552 11 O -0.578 6.578 12 C 0.146 3.854 13 N -0.587 5.587 14 S 0.260 5.740 15 C -0.098 4.098 16 C -0.095 4.095 17 C -0.071 4.071 18 C -0.139 4.139 19 C -0.021 4.021 20 C -0.163 4.163 21 C 0.539 3.461 22 O -0.512 6.512 23 C 0.231 3.769 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.146 4.146 27 C -0.120 4.120 28 C -0.070 4.070 29 H 0.275 0.725 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.050 -11.885 0.106 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.157 4.157 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.497 4.497 8 H 0.119 0.881 9 N -0.119 5.119 10 C 0.236 3.764 11 O -0.462 6.462 12 C 0.020 3.980 13 N -0.407 5.407 14 S 0.404 5.596 15 C -0.215 4.215 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.161 4.161 19 C -0.042 4.042 20 C -0.174 4.174 21 C 0.325 3.675 22 O -0.389 6.389 23 C 0.140 3.860 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.164 4.164 27 C -0.139 4.139 28 C -0.090 4.090 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.645 -11.186 0.896 14.165 hybrid contribution -0.426 0.898 -1.127 1.502 sum 8.219 -10.288 -0.230 13.169 Atomic orbital electron populations 1.69922 1.06075 1.28477 1.42429 1.25258 0.95272 0.99820 0.95320 0.86127 0.79349 0.80898 0.79181 1.19620 1.20705 1.19556 1.19442 0.97369 0.84361 1.48507 0.88085 1.41220 1.23045 1.05103 1.42570 1.20259 0.88548 0.83785 0.83807 1.90619 1.62003 1.34782 1.58753 1.21241 0.97538 0.75846 1.03422 1.49008 1.49368 1.14724 1.27644 1.83928 1.47907 0.96972 1.30766 1.23087 1.00461 0.99218 0.98715 1.20247 1.01322 0.89865 1.00592 1.21278 0.95872 0.98837 0.93214 1.20732 0.99220 0.96548 0.99565 1.20649 0.96236 0.90952 0.96341 1.20014 1.03360 0.94834 0.99215 1.17798 0.81919 0.85623 0.82163 1.90886 1.34298 1.73362 1.40340 1.17142 0.86299 0.93797 0.88739 1.20961 0.98092 1.01957 0.93400 1.20681 0.92733 1.02047 0.98738 1.20769 0.96813 1.03169 0.95654 1.20737 0.97431 1.01517 0.94245 1.20858 0.91582 0.98026 0.98500 0.91397 0.85823 0.87147 0.84656 0.84661 0.84975 0.84829 0.87207 0.87423 0.87611 0.87440 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.60 11.01 55.49 0.61 -20.99 16 2 C 0.05 1.30 5.09 -17.49 -0.09 1.21 16 3 Si 0.92 18.85 29.60 -169.99 -5.03 13.82 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.37 -9.03 9.00 -14.94 -0.13 -9.16 16 8 H 0.10 2.22 6.62 -52.48 -0.35 1.87 16 9 N -0.40 -10.10 2.67 -58.98 -0.16 -10.26 16 10 C 0.45 10.93 7.60 -10.98 -0.08 10.85 16 11 O -0.58 -15.68 16.11 5.55 0.09 -15.59 16 12 C 0.15 2.91 4.86 -5.19 -0.03 2.88 16 13 N -0.59 -11.24 2.57 -63.46 -0.16 -11.40 16 14 S 0.26 3.88 23.52 -107.50 -2.53 1.35 16 15 C -0.10 -1.36 6.66 -38.43 -0.26 -1.62 16 16 C -0.10 -0.97 10.07 -39.49 -0.40 -1.37 16 17 C -0.07 -0.61 10.05 -39.53 -0.40 -1.01 16 18 C -0.14 -1.34 9.92 -40.09 -0.40 -1.74 16 19 C -0.02 -0.28 10.00 -39.30 -0.39 -0.68 16 20 C -0.16 -2.66 6.09 -104.99 -0.64 -3.30 16 21 C 0.54 10.96 7.59 -13.93 -0.11 10.85 16 22 O -0.51 -12.13 17.43 5.01 0.09 -12.04 16 23 C 0.23 5.77 2.55 -83.69 -0.21 5.56 16 24 C -0.12 -2.85 9.80 -39.37 -0.39 -3.23 16 25 C -0.12 -2.48 10.04 -39.61 -0.40 -2.87 16 26 C -0.15 -2.84 10.04 -39.53 -0.40 -3.24 16 27 C -0.12 -2.55 10.04 -39.61 -0.40 -2.95 16 28 C -0.07 -1.73 8.68 -39.37 -0.34 -2.07 16 29 H 0.28 6.84 8.32 -40.82 -0.34 6.50 16 30 H 0.12 2.50 7.85 -51.93 -0.41 2.09 16 31 H 0.11 1.86 7.83 -51.93 -0.41 1.45 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 37 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 40 H 0.11 2.77 8.06 -52.48 -0.42 2.35 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -33.34 365.46 -10.74 -44.08 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.10 Total: 7.42 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -5.05 Total: -1.88 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.29 Total: -42.65 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: 0.18 Total: -27.64 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.53 Total: 1.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.34 -10.74 -44.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084549094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.537 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds