Wall clock time and date at job start Tue Mar 31 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46879 * 2 1 4 4 N 1.46492 * 109.47302 * 119.99930 * 2 1 3 5 5 C 1.36939 * 119.99794 * 123.39759 * 4 2 1 6 6 H 1.08005 * 119.99939 * 217.36886 * 5 4 2 7 7 C 1.38809 * 120.00365 * 37.36799 * 5 4 2 8 8 N 1.31616 * 119.99766 * 13.86084 * 7 5 4 9 9 Si 1.86804 * 120.00217 * 193.87015 * 7 5 4 10 10 H 1.48507 * 109.46981 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47310 * 119.99389 * 9 7 5 12 12 H 1.48505 * 109.46858 * 239.99872 * 9 7 5 13 13 C 1.46504 * 120.00358 * 303.11868 * 4 2 1 14 14 C 1.50690 * 109.47099 * 268.25615 * 13 4 2 15 15 C 1.38240 * 119.94831 * 91.66364 * 14 13 4 16 16 C 1.38664 * 120.08057 * 180.02562 * 15 14 13 17 17 C 1.39017 * 119.82944 * 359.84061 * 16 15 14 18 18 C 1.38658 * 119.83881 * 0.17987 * 17 16 15 19 19 C 1.38295 * 119.94887 * 271.38353 * 14 13 4 20 20 Br 1.89099 * 119.95296 * 0.03309 * 19 14 13 21 21 O 1.36113 * 120.77476 * 180.23517 * 17 16 15 22 22 C 1.43177 * 116.69451 * 342.62954 * 21 17 16 23 23 C 1.53471 * 108.23664 * 46.28693 * 22 21 17 24 24 O 1.36118 * 119.39805 * 179.61728 * 16 15 14 25 25 H 1.09001 * 109.47037 * 303.27315 * 1 2 3 26 26 H 1.09002 * 109.47256 * 63.27675 * 1 2 3 27 27 H 1.09002 * 109.46771 * 183.27333 * 1 2 3 28 28 H 1.09005 * 109.47192 * 240.00621 * 2 1 3 29 29 H 1.08996 * 109.47048 * 171.04209 * 3 2 1 30 30 H 1.08999 * 109.46951 * 291.04656 * 3 2 1 31 31 H 1.08997 * 109.47029 * 51.04461 * 3 2 1 32 32 H 0.97004 * 120.00014 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46537 * 28.25712 * 13 4 2 34 34 H 1.08995 * 109.46995 * 148.25027 * 13 4 2 35 35 H 1.07991 * 119.96068 * 0.02562 * 15 14 13 36 36 H 1.07995 * 119.97639 * 179.91765 * 18 17 16 37 37 H 1.09001 * 109.70617 * 165.96988 * 22 21 17 38 38 H 1.08994 * 109.70988 * 286.59722 * 22 21 17 39 39 H 1.08997 * 109.70905 * 59.94571 * 23 22 21 40 40 H 1.09001 * 109.70340 * 180.56679 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.8620 -1.7620 1.0716 6 1 2.7696 -2.6029 1.7430 7 6 3.8360 -1.7672 0.0826 8 7 4.1344 -0.6540 -0.5530 9 14 4.7230 -3.3543 -0.3465 10 1 4.2079 -4.4554 0.5066 11 1 4.4869 -3.6826 -1.7752 12 1 6.1796 -3.1864 -0.1111 13 6 1.6090 -0.2312 2.5257 14 6 2.6136 0.7651 3.0442 15 6 2.4302 2.1153 2.8109 16 6 3.3532 3.0344 3.2863 17 6 4.4616 2.5949 4.0010 18 6 4.6407 1.2394 4.2316 19 6 3.7146 0.3278 3.7577 20 35 3.9576 -1.5195 4.0805 21 8 5.3771 3.4807 4.4806 22 6 5.3640 4.7928 3.9077 23 6 3.9088 5.2769 3.8496 24 8 3.1630 4.3599 3.0418 25 1 -0.3633 0.5638 0.8592 26 1 -0.3634 0.4621 -0.9179 27 1 -0.3633 -1.0260 0.0587 28 1 1.8933 -0.5138 -0.8901 29 1 3.1181 1.4468 0.1600 30 1 1.8131 1.9081 -0.9591 31 1 1.5519 2.0004 0.7991 32 1 4.8148 -0.6577 -1.2444 33 1 0.6288 0.2412 2.4609 34 1 1.5579 -1.0825 3.2044 35 1 1.5671 2.4546 2.2576 36 1 5.5016 0.8954 4.7854 37 1 5.9522 5.4701 4.5269 38 1 5.7806 4.7586 2.9011 39 1 3.4902 5.3049 4.8556 40 1 3.8700 6.2723 3.4069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084597233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:01 Heat of formation + Delta-G solvation = -13.173932 kcal Electronic energy + Delta-G solvation = -24872.948212 eV Core-core repulsion = 21314.940603 eV Total energy + Delta-G solvation = -3558.007609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.94775 -38.06334 -37.00236 -35.99400 -31.97403 -31.91681 -31.06296 -29.95820 -29.29592 -27.71139 -26.02613 -25.43760 -24.07614 -22.78727 -22.15717 -20.19293 -19.05566 -18.26597 -17.21109 -16.75534 -16.47279 -15.19031 -14.90430 -14.68986 -14.28123 -14.18871 -13.92567 -13.85931 -13.62974 -13.42630 -12.84376 -12.51556 -12.44852 -11.78797 -11.52607 -11.34758 -11.24262 -11.00986 -10.98915 -10.88634 -10.78460 -10.45114 -10.24142 -10.06245 -9.91718 -9.90391 -9.57096 -9.26178 -9.12112 -8.33992 -8.01157 -7.46485 -6.50413 -5.74409 -3.23468 1.62789 1.76388 2.38505 3.24554 3.39661 3.48558 3.48882 3.50065 4.06288 4.33103 4.55710 4.83092 4.90851 4.92926 5.24303 5.44288 5.46256 5.56299 5.57505 5.70571 5.77221 6.05139 6.18246 6.29189 6.37923 6.43385 6.48069 6.53107 6.71529 6.76477 6.83924 6.93257 6.96978 7.07540 7.15029 7.19613 7.67387 7.71332 7.82938 7.98235 8.58468 9.29522 9.85777 10.44220 11.31448 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.005751 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.359684 B = 4867.782397 C = 5878.109156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.187 3.813 3 C -0.153 4.153 4 N -0.563 5.563 5 C -0.244 4.244 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.290 1.290 13 C 0.167 3.833 14 C -0.038 4.038 15 C -0.106 4.106 16 C 0.059 3.941 17 C 0.029 3.971 18 C -0.090 4.090 19 C -0.065 4.065 20 Br -0.038 7.038 21 O -0.311 6.311 22 C 0.022 3.978 23 C 0.022 3.978 24 O -0.308 6.308 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.251 0.749 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 8.341 9.492 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.081 3.919 3 C -0.212 4.212 4 N -0.282 5.282 5 C -0.374 4.374 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.217 1.217 13 C 0.040 3.960 14 C -0.045 4.045 15 C -0.127 4.127 16 C 0.014 3.986 17 C -0.016 4.016 18 C -0.110 4.110 19 C -0.146 4.146 20 Br 0.048 6.952 21 O -0.226 6.226 22 C -0.054 4.054 23 C -0.054 4.054 24 O -0.222 6.222 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.229 7.667 9.436 12.220 hybrid contribution 0.999 0.162 -0.535 1.145 sum -0.229 7.829 8.901 11.856 Atomic orbital electron populations 1.22369 1.00136 1.00462 0.99336 1.20204 0.88403 0.92049 0.91256 1.22470 1.03679 0.97381 0.97632 1.44136 1.53560 1.32728 0.97745 1.19197 1.08685 0.93883 1.15667 0.91294 1.25209 0.96195 0.95983 1.00812 1.70011 1.32406 1.24427 1.26006 0.86429 0.79681 0.84100 0.77925 1.20055 1.21737 1.21685 1.20252 0.92752 0.93482 0.89478 1.20839 0.97517 0.94187 0.91913 1.20407 0.99183 0.90825 1.02243 1.18912 0.94806 0.83417 1.01493 1.18491 0.90115 0.89811 1.03201 1.20142 0.99612 0.88837 1.02438 1.21160 0.98400 0.90539 1.04485 1.96585 1.96836 1.07278 1.94475 1.86250 1.54036 1.21399 1.60911 1.23539 0.97405 0.83749 1.00710 1.23542 0.91716 0.93541 0.96602 1.86308 1.64677 1.13188 1.58071 0.94263 0.94183 0.93339 0.89621 0.90351 0.95812 0.94990 0.93887 0.93005 0.91719 0.84258 0.85014 0.86629 0.90743 0.90894 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.03 37.16 0.34 -2.71 16 2 C 0.19 4.16 2.37 -67.93 -0.16 4.00 16 3 C -0.15 -3.31 7.61 37.16 0.28 -3.03 16 4 N -0.56 -12.97 2.35 -167.03 -0.39 -13.36 16 5 C -0.24 -6.18 7.93 -15.06 -0.12 -6.30 16 6 H 0.07 1.76 7.29 -52.48 -0.38 1.38 16 7 C 0.02 0.49 4.90 -17.43 -0.09 0.40 16 8 N -0.89 -24.39 10.38 55.49 0.58 -23.82 16 9 Si 0.89 21.42 29.58 -169.99 -5.03 16.39 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.17 3.37 4.96 -5.20 -0.03 3.35 16 14 C -0.04 -0.77 5.13 -104.61 -0.54 -1.31 16 15 C -0.11 -2.01 7.66 -39.42 -0.30 -2.32 16 16 C 0.06 1.07 6.49 -39.14 -0.25 0.81 16 17 C 0.03 0.53 6.49 -39.14 -0.25 0.28 16 18 C -0.09 -1.68 9.70 -39.40 -0.38 -2.06 16 19 C -0.06 -1.29 6.22 -39.53 -0.25 -1.54 16 20 Br -0.04 -0.72 29.65 -68.01 -2.02 -2.74 16 21 O -0.31 -4.95 10.42 -32.88 -0.34 -5.29 16 22 C 0.02 0.25 7.26 37.40 0.27 0.52 16 23 C 0.02 0.24 7.26 37.40 0.27 0.52 16 24 O -0.31 -4.94 10.42 -32.89 -0.34 -5.28 16 25 H 0.04 0.67 6.70 -51.93 -0.35 0.32 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 2.19 6.43 -51.93 -0.33 1.85 16 29 H 0.08 1.99 7.05 -51.93 -0.37 1.62 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.03 0.63 4.44 -51.93 -0.23 0.40 16 32 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.05 0.96 6.26 -51.93 -0.33 0.63 16 34 H 0.06 1.30 6.61 -51.93 -0.34 0.95 16 35 H 0.14 2.52 5.77 -52.49 -0.30 2.21 16 36 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 37 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -28.87 331.05 -8.91 -37.78 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.15 Total: 0.70 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.21 Total: -9.38 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.18 Total: -37.18 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.69 Total: -10.57 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.02 Total: -2.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.87 -8.91 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084597233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.607 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds