Wall clock time and date at job start Tue Mar 31 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46893 * 2 1 4 4 C 1.50697 * 109.47180 * 119.99715 * 2 1 3 5 5 H 1.08001 * 119.99875 * 120.00390 * 4 2 1 6 6 C 1.37881 * 120.00085 * 300.00205 * 4 2 1 7 7 N 1.31516 * 119.99707 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99859 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47109 * 89.99821 * 8 6 4 10 10 H 1.48502 * 109.47016 * 209.99914 * 8 6 4 11 11 H 1.48504 * 109.47167 * 329.99528 * 8 6 4 12 12 N 1.46494 * 109.47327 * 240.00176 * 2 1 3 13 13 C 1.46503 * 120.00048 * 299.99514 * 12 2 1 14 14 C 1.34782 * 120.00319 * 119.99833 * 12 2 1 15 15 O 1.21594 * 119.99814 * 359.97438 * 14 12 2 16 16 N 1.34771 * 120.00249 * 179.97438 * 14 12 2 17 17 C 1.40147 * 120.00440 * 184.58478 * 16 14 12 18 18 C 1.38831 * 120.01196 * 324.90818 * 17 16 14 19 19 C 1.38096 * 119.98517 * 180.02562 * 18 17 16 20 20 C 1.38715 * 120.01753 * 0.02918 * 19 18 17 21 21 O 1.35977 * 119.98947 * 179.97438 * 20 19 18 22 22 C 1.42893 * 116.99947 * 179.97438 * 21 20 19 23 23 C 1.50699 * 109.47041 * 180.02562 * 22 21 20 24 24 C 1.38235 * 119.99887 * 269.72771 * 23 22 21 25 25 C 1.38235 * 120.00145 * 179.76577 * 24 23 22 26 26 C 1.38234 * 119.99715 * 0.48404 * 25 24 23 27 27 C 1.38234 * 120.00196 * 359.79218 * 26 25 24 28 28 C 1.38234 * 120.00206 * 90.00192 * 23 22 21 29 29 C 1.38717 * 120.02513 * 0.22744 * 20 19 18 30 30 C 1.38105 * 120.01308 * 359.49070 * 29 20 19 31 31 H 1.09002 * 109.46893 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47211 * 299.99966 * 1 2 3 33 33 H 1.09000 * 109.47063 * 60.00078 * 1 2 3 34 34 H 0.97001 * 119.99578 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47333 * 270.00477 * 13 12 2 36 36 H 1.09001 * 109.46503 * 30.00303 * 13 12 2 37 37 H 1.08995 * 109.47204 * 150.00099 * 13 12 2 38 38 H 0.97008 * 120.00158 * 4.58441 * 16 14 12 39 39 H 1.08001 * 120.01132 * 0.04677 * 18 17 16 40 40 H 1.08004 * 119.99571 * 179.97438 * 19 18 17 41 41 H 1.08999 * 109.47744 * 300.00033 * 22 21 20 42 42 H 1.09006 * 109.46982 * 60.00216 * 22 21 20 43 43 H 1.08006 * 120.00132 * 359.97438 * 24 23 22 44 44 H 1.08004 * 120.00585 * 180.25546 * 25 24 23 45 45 H 1.08007 * 120.00500 * 179.76860 * 26 25 24 46 46 H 1.07997 * 120.00398 * 179.97438 * 27 26 25 47 47 H 1.08001 * 119.99798 * 0.02562 * 28 23 22 48 48 H 1.08000 * 119.99361 * 179.74672 * 29 20 19 49 49 H 1.07999 * 120.00542 * 180.23607 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9757 1.9952 3.9067 11 1 0.8469 2.1765 1.4920 12 7 2.0184 -0.6905 -1.1961 13 6 1.6646 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0866 1.1287 -1.8912 16 7 3.2429 -0.6710 -3.1835 17 6 4.1260 -0.0211 -4.0564 18 6 4.0061 1.3444 -4.2761 19 6 4.8762 1.9841 -5.1367 20 6 5.8696 1.2625 -5.7822 21 8 6.7257 1.8928 -6.6299 22 6 7.7246 1.0883 -7.2598 23 6 8.5741 1.9524 -8.1558 24 6 8.2208 2.1320 -9.4801 25 6 8.9973 2.9285 -10.3008 26 6 10.1327 3.5374 -9.7996 27 6 10.4892 3.3532 -8.4768 28 6 9.7098 2.5609 -7.6548 29 6 5.9866 -0.1029 -5.5672 30 6 5.1208 -0.7428 -4.7023 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9040 -0.5273 4.4375 35 1 2.4159 -2.7376 -0.9716 36 1 0.6905 -2.3002 -0.9846 37 1 1.6240 -2.2852 -2.5001 38 1 2.9554 -1.5782 -3.3712 39 1 3.2326 1.9065 -3.7737 40 1 4.7828 3.0464 -5.3080 41 1 8.3533 0.6270 -6.4982 42 1 7.2438 0.3110 -7.8537 43 1 7.3362 1.6527 -9.8728 44 1 8.7191 3.0722 -11.3344 45 1 10.7415 4.1567 -10.4417 46 1 11.3764 3.8286 -8.0854 47 1 9.9884 2.4167 -6.6214 48 1 6.7577 -0.6650 -6.0732 49 1 5.2144 -1.8052 -4.5321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084636669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:59 Heat of formation + Delta-G solvation = 10.614624 kcal Electronic energy + Delta-G solvation = -29681.488401 eV Core-core repulsion = 25574.924633 eV Total energy + Delta-G solvation = -4106.563768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.58609 -39.94948 -39.17341 -37.47659 -35.59886 -34.24014 -32.73801 -32.35684 -31.29667 -30.95901 -30.41125 -28.31860 -26.71051 -26.30623 -25.11424 -23.12526 -22.98311 -22.67562 -21.64156 -20.88682 -19.20104 -18.33966 -17.86349 -17.34808 -17.00849 -16.45846 -16.24686 -15.95945 -15.53264 -15.24657 -14.89644 -14.79598 -14.38989 -14.28337 -13.79303 -13.74313 -13.47124 -13.27306 -13.18434 -12.99185 -12.80214 -12.68919 -12.50871 -12.40829 -12.24561 -11.84155 -11.66804 -11.56345 -11.45380 -11.26407 -11.12110 -10.90120 -10.68531 -10.15044 -9.75755 -9.64740 -9.45332 -9.30827 -9.28999 -9.24464 -8.89558 -8.63967 -7.89069 -7.48182 -6.14991 -4.15648 0.82924 1.01573 1.39342 1.47301 2.98255 3.10007 3.23166 3.37390 3.40059 3.57113 3.62740 3.97946 4.34188 4.34934 4.36372 4.40161 4.61078 4.71554 4.80283 4.83251 4.88424 4.97974 5.12094 5.17561 5.24460 5.35294 5.43874 5.47763 5.55216 5.64155 5.70903 5.88212 5.98584 6.02793 6.04687 6.11190 6.12874 6.17575 6.22880 6.30269 6.31097 6.39621 6.49288 6.57724 6.64287 6.82725 6.86912 7.05237 7.30818 7.40799 7.52821 7.62307 8.34553 8.49287 8.85952 9.06836 9.45934 10.97773 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.001674 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.672880 B =16719.647728 C =17110.514318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.244 3.756 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.599 5.599 13 C 0.087 3.913 14 C 0.700 3.300 15 O -0.581 6.581 16 N -0.693 5.693 17 C 0.143 3.857 18 C -0.081 4.081 19 C -0.130 4.130 20 C 0.102 3.898 21 O -0.311 6.311 22 C 0.101 3.899 23 C -0.093 4.093 24 C -0.096 4.096 25 C -0.125 4.125 26 C -0.113 4.113 27 C -0.124 4.124 28 C -0.095 4.095 29 C -0.190 4.190 30 C -0.114 4.114 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.266 0.734 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.403 0.597 39 H 0.150 0.850 40 H 0.131 0.869 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.872 1.359 -27.438 29.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.333 5.333 13 C -0.057 4.057 14 C 0.402 3.598 15 O -0.459 6.459 16 N -0.343 5.343 17 C 0.048 3.952 18 C -0.101 4.101 19 C -0.149 4.149 20 C 0.057 3.943 21 O -0.225 6.225 22 C 0.026 3.974 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.143 4.143 26 C -0.131 4.131 27 C -0.142 4.142 28 C -0.113 4.113 29 C -0.209 4.209 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.240 0.760 39 H 0.167 0.833 40 H 0.149 0.851 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.029 2.363 -27.030 29.288 hybrid contribution -0.606 -0.155 0.293 0.691 sum 10.422 2.209 -26.736 28.781 Atomic orbital electron populations 1.22482 0.99139 1.01059 0.99357 1.19234 0.89724 0.95024 0.81795 0.91727 1.21164 1.32684 1.14285 0.88479 0.90399 1.24863 0.95706 0.96591 0.95604 1.69876 1.45192 1.40197 0.97966 0.86915 0.80352 0.83846 0.77571 1.20416 1.22123 1.18723 1.47165 1.51229 1.11692 1.23190 1.21544 1.02396 0.83075 0.98643 1.15908 0.79474 0.85012 0.79404 1.90856 1.62530 1.15372 1.77129 1.42856 1.48973 1.18582 1.23888 1.17482 0.91878 0.92460 0.93416 1.21262 0.99602 0.93638 0.95605 1.20337 0.95420 1.00321 0.98870 1.18919 0.91746 0.91090 0.92563 1.86143 1.42217 1.37114 1.57055 1.21529 0.88807 0.92267 0.94751 1.19536 0.95789 0.99984 0.94038 1.21103 0.99137 0.97968 0.93212 1.21166 0.95416 0.97708 0.99969 1.21241 0.96940 0.99186 0.95711 1.21181 1.00020 0.98938 0.94033 1.21134 0.94381 0.95961 0.99856 1.20907 1.02802 0.93424 1.03805 1.20646 0.93870 1.00088 0.98885 0.92545 0.93037 0.94721 0.92435 0.92694 0.90314 0.93433 0.76038 0.83260 0.85145 0.91168 0.91227 0.85776 0.85792 0.85921 0.85741 0.85680 0.85524 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 2 C 0.24 5.85 2.23 -69.09 -0.15 5.69 16 3 H 0.07 1.73 5.96 -51.93 -0.31 1.42 16 4 C -0.53 -14.53 8.95 -34.44 -0.31 -14.84 16 5 H 0.08 2.31 7.89 -52.49 -0.41 1.90 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 8 Si 0.88 21.78 24.37 -169.99 -4.14 17.63 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.60 -12.14 2.75 -181.01 -0.50 -12.64 16 13 C 0.09 1.36 9.48 59.85 0.57 1.93 16 14 C 0.70 14.12 8.13 -86.92 -0.71 13.41 16 15 O -0.58 -13.77 13.10 5.28 0.07 -13.70 16 16 N -0.69 -10.74 5.22 -14.19 -0.07 -10.82 16 17 C 0.14 2.16 6.30 -83.62 -0.53 1.63 16 18 C -0.08 -1.28 8.69 -39.41 -0.34 -1.62 16 19 C -0.13 -1.83 9.98 -39.46 -0.39 -2.22 16 20 C 0.10 1.31 6.69 -39.23 -0.26 1.05 16 21 O -0.31 -3.75 10.12 -19.67 -0.20 -3.94 16 22 C 0.10 0.90 4.86 36.01 0.18 1.07 16 23 C -0.09 -0.82 5.51 -104.62 -0.58 -1.40 16 24 C -0.10 -0.76 9.70 -39.58 -0.38 -1.14 16 25 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 26 C -0.11 -0.76 10.05 -39.58 -0.40 -1.16 16 27 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 28 C -0.10 -0.79 9.70 -39.58 -0.38 -1.17 16 29 C -0.19 -2.18 9.03 -39.45 -0.36 -2.53 16 30 C -0.11 -1.40 9.96 -39.41 -0.39 -1.80 16 31 H 0.06 1.10 6.66 -51.93 -0.35 0.75 16 32 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 37 H 0.05 0.54 6.30 -51.93 -0.33 0.22 16 38 H 0.40 4.89 6.52 -40.82 -0.27 4.62 16 39 H 0.15 2.64 6.22 -52.49 -0.33 2.31 16 40 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 41 H 0.07 0.55 7.61 -51.93 -0.40 0.16 16 42 H 0.07 0.51 7.59 -51.93 -0.39 0.11 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 45 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 49 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -34.20 395.23 -9.73 -43.93 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.60 Total: 6.43 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -5.01 Total: -6.73 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.20 Total: -49.57 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.13 Total: -17.64 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.20 -9.73 -43.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084636669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.544 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds