Wall clock time and date at job start Tue Mar 31 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47422 * 2 1 4 4 C 1.50699 * 109.47052 * 239.99372 * 2 1 3 5 5 H 1.08000 * 120.00339 * 240.00283 * 4 2 1 6 6 C 1.37878 * 119.99936 * 60.00596 * 4 2 1 7 7 N 1.31509 * 119.99764 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99919 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47185 * 269.99728 * 8 6 4 10 10 H 1.48499 * 109.47292 * 30.00148 * 8 6 4 11 11 H 1.48500 * 109.46781 * 149.99769 * 8 6 4 12 12 N 1.46506 * 109.46725 * 119.99993 * 2 1 3 13 13 C 1.46492 * 120.00392 * 59.99601 * 12 2 1 14 14 C 1.34782 * 119.99542 * 239.99840 * 12 2 1 15 15 O 1.21596 * 120.00078 * 359.97438 * 14 12 2 16 16 N 1.34780 * 119.99785 * 180.02562 * 14 12 2 17 17 C 1.40151 * 119.99841 * 175.41120 * 16 14 12 18 18 C 1.38831 * 120.01018 * 214.81178 * 17 16 14 19 19 C 1.38105 * 119.98266 * 179.74890 * 18 17 16 20 20 C 1.38713 * 120.01034 * 0.52731 * 19 18 17 21 21 O 1.35978 * 119.98189 * 179.72697 * 20 19 18 22 22 C 1.42895 * 117.00312 * 0.02562 * 21 20 19 23 23 C 1.50696 * 109.47474 * 180.02562 * 22 21 20 24 24 C 1.38243 * 120.00127 * 269.73152 * 23 22 21 25 25 C 1.38231 * 119.99872 * 179.76494 * 24 23 22 26 26 C 1.38231 * 120.00201 * 0.48637 * 25 24 23 27 27 C 1.38237 * 119.99909 * 359.78527 * 26 25 24 28 28 C 1.38231 * 120.00124 * 90.00254 * 23 22 21 29 29 C 1.38713 * 120.03084 * 359.74821 * 20 19 18 30 30 C 1.38092 * 120.01436 * 359.97438 * 29 20 19 31 31 H 1.09001 * 109.46767 * 59.99874 * 1 2 3 32 32 H 1.08995 * 109.47422 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46876 * 300.00653 * 1 2 3 34 34 H 0.97003 * 120.00041 * 180.02562 * 7 6 4 35 35 H 1.09007 * 109.46782 * 89.99832 * 13 12 2 36 36 H 1.08995 * 109.47553 * 210.00043 * 13 12 2 37 37 H 1.09003 * 109.47036 * 330.00263 * 13 12 2 38 38 H 0.96995 * 120.00102 * 355.40992 * 16 14 12 39 39 H 1.07999 * 120.01244 * 0.02583 * 18 17 16 40 40 H 1.07999 * 119.99407 * 180.27273 * 19 18 17 41 41 H 1.09004 * 109.47666 * 300.00476 * 22 21 20 42 42 H 1.09002 * 109.47196 * 60.00697 * 22 21 20 43 43 H 1.08001 * 119.99858 * 359.97438 * 24 23 22 44 44 H 1.08006 * 119.99813 * 180.25200 * 25 24 23 45 45 H 1.08004 * 120.00077 * 179.77009 * 26 25 24 46 46 H 1.08006 * 119.99999 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.00200 * 0.02562 * 28 23 22 48 48 H 1.08002 * 119.98943 * 179.97438 * 29 20 19 49 49 H 1.08003 * 120.00943 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9438 0.8301 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 3.6306 -0.5444 -4.4118 10 1 2.4879 -2.5657 -3.7120 11 1 1.3445 -0.9493 -5.1121 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0356 2.0834 15 8 3.0873 1.1284 1.8907 16 7 3.2428 -0.6711 3.1837 17 6 4.1260 -0.0211 4.0565 18 6 5.1173 -0.7438 4.7064 19 6 5.9906 -0.1019 5.5624 20 6 5.8704 1.2626 5.7812 21 8 6.7270 1.8930 6.6283 22 6 7.7263 1.0886 7.2579 23 6 8.5755 1.9526 8.1542 24 6 9.7140 2.5572 7.6549 25 6 10.4902 3.3536 8.4759 26 6 10.1337 3.5373 9.7987 27 6 8.9983 2.9281 10.2995 28 6 8.2191 2.1359 9.4772 29 6 4.8764 1.9841 5.1365 30 6 4.0062 1.3445 4.2760 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.7091 1.1613 -3.4844 35 1 2.4156 -2.7377 0.9718 36 1 1.6236 -2.2851 2.5003 37 1 0.6903 -2.3001 0.9848 38 1 2.9551 -1.5781 3.3714 39 1 5.2085 -1.8069 4.5392 40 1 6.7647 -0.6631 6.0646 41 1 7.2458 0.3113 7.8521 42 1 8.3546 0.6273 6.4960 43 1 9.9950 2.4101 6.6226 44 1 11.3775 3.8293 8.0847 45 1 10.7423 4.1565 10.4411 46 1 8.7199 3.0712 11.3332 47 1 7.3323 1.6596 9.8686 48 1 4.7831 3.0464 5.3077 49 1 3.2326 1.9064 3.7737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084636671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:03 Heat of formation + Delta-G solvation = 1.770225 kcal Electronic energy + Delta-G solvation = -29614.369743 eV Core-core repulsion = 25507.422453 eV Total energy + Delta-G solvation = -4106.947290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51669 -39.87287 -39.11501 -37.38338 -35.40064 -34.13775 -32.78584 -32.34200 -31.28101 -30.91065 -29.59237 -28.12151 -26.67097 -26.13750 -25.20116 -23.06867 -22.96660 -22.54312 -21.59693 -20.79150 -19.14198 -18.29251 -17.74134 -17.31858 -16.85703 -16.26058 -16.21922 -15.88997 -15.22045 -15.15872 -14.88106 -14.75700 -14.27026 -14.23330 -13.77706 -13.68528 -13.34545 -13.26392 -13.21319 -12.79851 -12.66840 -12.60981 -12.47036 -12.37900 -11.59972 -11.54685 -11.53462 -11.42924 -11.19216 -11.03741 -10.85074 -10.83915 -10.70484 -10.24676 -10.16104 -9.65905 -9.33489 -9.29248 -9.22527 -9.15692 -8.84004 -8.42594 -7.76230 -7.38885 -6.06978 -4.14620 0.84657 1.03155 1.43963 1.52759 3.02291 3.21100 3.27670 3.34331 3.36803 3.64261 3.67961 4.06079 4.35878 4.38073 4.41928 4.53917 4.62670 4.73352 4.83444 4.85229 4.92071 5.00922 5.13924 5.24209 5.26094 5.40135 5.49698 5.54509 5.56853 5.65744 5.76884 5.97520 6.05081 6.05669 6.08641 6.12675 6.19345 6.21093 6.35277 6.48393 6.59330 6.70527 6.74506 6.80370 7.00725 7.12540 7.15969 7.44574 7.47064 7.69556 7.82796 8.06187 8.21407 8.63645 8.86367 9.21346 9.52311 10.98370 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.001641 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.220539 B =17057.681401 C =17466.575083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.604 5.604 13 C 0.088 3.912 14 C 0.697 3.303 15 O -0.580 6.580 16 N -0.695 5.695 17 C 0.145 3.855 18 C -0.116 4.116 19 C -0.190 4.190 20 C 0.100 3.900 21 O -0.311 6.311 22 C 0.102 3.898 23 C -0.093 4.093 24 C -0.095 4.095 25 C -0.124 4.124 26 C -0.113 4.113 27 C -0.125 4.125 28 C -0.096 4.096 29 C -0.129 4.129 30 C -0.081 4.081 31 H 0.095 0.905 32 H 0.030 0.970 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.401 0.599 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.131 0.869 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.263 -2.034 24.575 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.339 5.339 13 C -0.057 4.057 14 C 0.399 3.601 15 O -0.458 6.458 16 N -0.346 5.346 17 C 0.050 3.950 18 C -0.138 4.138 19 C -0.209 4.209 20 C 0.055 3.945 21 O -0.225 6.225 22 C 0.027 3.973 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.142 4.142 26 C -0.131 4.131 27 C -0.143 4.143 28 C -0.114 4.114 29 C -0.149 4.149 30 C -0.101 4.101 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.149 0.851 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.316 -0.899 24.210 27.645 hybrid contribution 0.293 -1.329 -0.858 1.609 sum 13.608 -2.228 23.352 27.120 Atomic orbital electron populations 1.22114 0.98224 0.99345 1.00929 1.18906 0.90641 0.94360 0.78936 0.91648 1.21324 1.31776 1.13017 0.90289 0.92333 1.24883 0.94964 0.95010 0.98933 1.69875 1.36355 1.22584 1.23760 0.86487 0.78655 0.79807 0.82367 1.20633 1.19988 1.21128 1.47602 1.50920 1.11524 1.23810 1.21496 1.02115 0.83567 0.98478 1.15990 0.79644 0.85096 0.79408 1.90859 1.62533 1.15332 1.77044 1.42931 1.49048 1.18539 1.24035 1.17497 0.91843 0.92446 0.93250 1.20627 0.93997 0.99970 0.99163 1.20891 1.02644 0.93429 1.03976 1.18911 0.91804 0.91111 0.92673 1.86142 1.42193 1.37089 1.57120 1.21520 0.88821 0.92271 0.94729 1.19540 0.95734 0.99978 0.94062 1.21133 0.94406 0.95966 0.99846 1.21177 1.00049 0.98906 0.94045 1.21238 0.96966 0.99190 0.95702 1.21167 0.95390 0.97747 0.99956 1.21103 0.99120 0.97981 0.93211 1.20343 0.95405 1.00316 0.98809 1.21285 0.99597 0.93693 0.95543 0.88695 0.95129 0.96897 0.92675 0.93254 0.93714 0.90396 0.76209 0.85722 0.85601 0.91262 0.91210 0.85693 0.85753 0.85927 0.85795 0.85770 0.85147 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 37.16 0.33 -3.15 16 2 C 0.27 6.92 2.64 -69.08 -0.18 6.73 16 3 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 4 C -0.53 -14.18 8.37 -34.44 -0.29 -14.47 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.60 -12.81 2.75 -181.00 -0.50 -13.31 16 13 C 0.09 1.42 9.48 59.84 0.57 1.99 16 14 C 0.70 14.69 8.13 -86.91 -0.71 13.98 16 15 O -0.58 -14.40 13.11 5.28 0.07 -14.33 16 16 N -0.70 -11.26 5.22 -14.19 -0.07 -11.34 16 17 C 0.15 2.28 6.30 -83.61 -0.53 1.75 16 18 C -0.12 -1.48 9.96 -39.41 -0.39 -1.87 16 19 C -0.19 -2.25 9.03 -39.45 -0.36 -2.60 16 20 C 0.10 1.33 6.69 -39.23 -0.26 1.07 16 21 O -0.31 -3.85 10.12 -19.67 -0.20 -4.05 16 22 C 0.10 0.92 4.86 36.00 0.18 1.10 16 23 C -0.09 -0.84 5.51 -104.62 -0.58 -1.41 16 24 C -0.10 -0.81 9.70 -39.58 -0.38 -1.19 16 25 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 26 C -0.11 -0.78 10.05 -39.58 -0.40 -1.18 16 27 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 28 C -0.10 -0.78 9.70 -39.59 -0.38 -1.16 16 29 C -0.13 -1.89 9.98 -39.46 -0.39 -2.28 16 30 C -0.08 -1.33 8.69 -39.42 -0.34 -1.68 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.04 0.55 6.30 -51.93 -0.33 0.22 16 37 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 38 H 0.40 5.14 6.52 -40.82 -0.27 4.88 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.13 6.29 -52.49 -0.33 0.80 16 41 H 0.07 0.52 7.60 -51.93 -0.39 0.13 16 42 H 0.07 0.56 7.60 -51.93 -0.39 0.17 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 46 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 48 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 49 H 0.15 2.79 6.22 -52.48 -0.33 2.47 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -32.77 402.05 -10.78 -43.55 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.73 Total: 7.08 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -5.01 Total: -5.32 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.06 Total: -49.05 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.13 Total: -18.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.77 -10.78 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084636671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.319 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds