Wall clock time and date at job start Tue Mar 31 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47117 * 2 1 4 4 C 1.52995 * 109.47775 * 120.00555 * 2 1 3 5 5 C 1.50694 * 109.47733 * 185.00253 * 4 2 1 6 6 N 1.27923 * 124.24314 * 89.97040 * 5 4 2 7 7 C 1.34668 * 117.85126 * 180.02562 * 6 5 4 8 8 C 1.40960 * 129.69343 * 180.02562 * 7 6 5 9 9 C 1.36185 * 120.42591 * 179.97438 * 8 7 6 10 10 C 1.38790 * 120.77857 * 359.97438 * 9 8 7 11 11 C 1.37658 * 120.06491 * 0.02562 * 10 9 8 12 12 C 1.39335 * 119.95334 * 359.97438 * 11 10 9 13 13 S 1.70655 * 124.23389 * 269.99981 * 5 4 2 14 14 N 1.46503 * 109.47165 * 240.00642 * 2 1 3 15 15 S 1.65602 * 120.00289 * 94.99288 * 14 2 1 16 16 O 1.42097 * 104.27570 * 181.07219 * 15 14 2 17 17 O 1.42102 * 104.27801 * 308.93727 * 15 14 2 18 18 C 1.81404 * 104.44368 * 65.00571 * 15 14 2 19 19 C 1.53005 * 109.46884 * 180.02562 * 18 15 14 20 20 C 1.50699 * 109.47138 * 179.97438 * 19 18 15 21 21 H 1.07997 * 119.99938 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00255 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99745 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00298 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47113 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.46856 * 119.99897 * 24 22 20 27 27 H 1.48501 * 109.46933 * 239.99717 * 24 22 20 28 28 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47037 * 299.99104 * 1 2 3 30 30 H 1.08994 * 109.47595 * 59.99575 * 1 2 3 31 31 H 1.09001 * 109.47151 * 64.99327 * 4 2 1 32 32 H 1.09003 * 109.46651 * 305.00468 * 4 2 1 33 33 H 1.07999 * 119.78929 * 359.97401 * 8 7 6 34 34 H 1.08000 * 119.61107 * 179.70192 * 9 8 7 35 35 H 1.08003 * 119.96518 * 180.02562 * 10 9 8 36 36 H 1.08001 * 120.01862 * 180.02562 * 11 10 9 37 37 H 0.97002 * 119.99764 * 274.99916 * 14 2 1 38 38 H 1.08998 * 109.47195 * 299.99481 * 18 15 14 39 39 H 1.08988 * 109.47647 * 60.00084 * 18 15 14 40 40 H 1.09001 * 109.47074 * 299.99808 * 19 18 15 41 41 H 1.09004 * 109.47237 * 59.99905 * 19 18 15 42 42 H 0.96999 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.6149 1.3126 6 7 4.1724 0.3331 1.8959 7 6 5.5185 0.3006 1.8734 8 6 6.4501 1.2016 2.4278 9 6 7.7872 0.9824 2.2907 10 6 8.2581 -0.1288 1.6053 11 6 7.3714 -1.0256 1.0535 12 6 5.9999 -0.8176 1.1838 13 16 4.6147 -1.7438 0.6146 14 7 2.0183 -0.6905 -1.1963 15 16 2.4120 0.1774 -2.5506 16 8 2.8121 -0.8073 -3.4937 17 8 1.2749 0.9969 -2.7845 18 6 3.8312 1.1874 -2.0441 19 6 4.2932 2.0456 -3.2235 20 6 5.4718 2.8851 -2.8026 21 1 5.8529 2.8140 -1.7946 22 6 6.0636 3.7439 -3.7044 23 7 5.5998 3.8301 -4.9321 24 14 7.5241 4.7851 -3.1825 25 1 7.8488 4.5050 -1.7608 26 1 8.6961 4.4553 -4.0327 27 1 7.1879 6.2231 -3.3389 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.7517 -1.7716 1.2054 32 1 1.6054 -0.2619 2.1369 33 1 6.1014 2.0714 2.9647 34 1 8.4894 1.6838 2.7166 35 1 9.3213 -0.2901 1.5049 36 1 7.7387 -1.8903 0.5207 37 1 2.1110 -1.6561 -1.1950 38 1 3.5399 1.8344 -1.2167 39 1 4.6458 0.5364 -1.7269 40 1 4.5844 1.3989 -4.0513 41 1 3.4785 2.6967 -3.5403 42 1 6.0164 4.4341 -5.5666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084641024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:02 Heat of formation + Delta-G solvation = -31.234504 kcal Electronic energy + Delta-G solvation = -27339.839634 eV Core-core repulsion = 23537.991785 eV Total energy + Delta-G solvation = -3801.847849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 354.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44467 -37.91578 -36.65883 -36.23983 -35.42374 -33.88203 -31.42139 -31.20192 -31.15055 -29.78033 -27.71712 -25.59641 -24.18904 -22.78078 -21.93600 -21.66214 -20.67538 -19.13238 -18.57894 -17.54500 -16.81420 -16.54454 -16.16037 -15.73845 -15.39536 -15.30770 -14.95740 -14.81525 -14.54157 -14.11952 -14.01469 -13.58570 -13.39429 -12.96970 -12.72532 -12.52856 -12.44191 -12.19786 -11.91601 -11.85603 -11.74321 -11.59383 -11.50863 -11.45551 -11.10135 -11.02470 -10.96521 -10.90825 -10.40828 -10.39960 -10.19267 -9.87630 -9.70868 -9.52179 -9.04122 -8.69664 -8.49311 -8.18117 -6.11194 -4.15862 0.32515 0.78444 1.07082 1.15809 1.64024 2.25593 3.08664 3.25036 3.32140 3.36220 3.60422 3.71251 4.21549 4.38461 4.44514 4.56461 4.64235 4.70618 4.84275 4.89300 5.11123 5.16601 5.22494 5.24292 5.25157 5.33190 5.46178 5.51149 5.65817 5.73217 5.75186 5.77876 6.02737 6.09805 6.11187 6.23120 6.29082 6.49975 6.60182 7.04102 7.30954 7.37085 7.53047 7.82685 8.19654 8.87588 9.48587 11.00054 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.007083 B = 0.005796 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3952.399230 B = 4829.886393 C = 7719.406151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.157 3.843 3 H 0.092 0.908 4 C -0.054 4.054 5 C 0.092 3.908 6 N -0.461 5.461 7 C 0.085 3.915 8 C -0.061 4.061 9 C -0.106 4.106 10 C -0.100 4.100 11 C -0.071 4.071 12 C -0.180 4.180 13 S 0.098 5.902 14 N -1.125 6.125 15 S 2.589 3.411 16 O -0.965 6.965 17 O -0.963 6.963 18 C -0.588 4.588 19 C 0.031 3.969 20 C -0.514 4.514 21 H 0.060 0.940 22 C 0.058 3.942 23 N -0.891 5.891 24 Si 0.896 3.104 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.411 0.589 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -12.012 17.321 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.096 4.096 5 C -0.193 4.193 6 N -0.174 5.174 7 C -0.034 4.034 8 C -0.082 4.082 9 C -0.127 4.127 10 C -0.122 4.122 11 C -0.093 4.093 12 C -0.299 4.299 13 S 0.355 5.645 14 N -0.882 5.882 15 S 2.687 3.313 16 O -0.955 6.955 17 O -0.953 6.953 18 C -0.721 4.721 19 C -0.008 4.008 20 C -0.554 4.554 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.529 5.529 24 Si 0.724 3.276 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.244 0.756 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.207 -12.310 16.022 20.458 hybrid contribution 1.979 1.043 1.028 2.462 sum -1.229 -11.267 17.050 20.474 Atomic orbital electron populations 1.22297 0.93781 1.02887 1.03767 1.20720 0.95056 0.96240 0.83161 0.88959 1.20792 0.85335 1.03161 1.00302 1.26567 1.01411 0.93656 0.97633 1.66135 1.06899 1.24408 1.19951 1.19122 0.88348 0.95498 1.00475 1.20394 0.91482 0.97768 0.98590 1.20740 0.95027 0.97812 0.99123 1.21142 0.99772 0.94096 0.97199 1.20354 0.89338 1.00136 0.99495 1.23849 0.99142 1.00642 1.06224 1.83931 0.95893 1.27884 1.56835 1.56028 1.82726 1.19165 1.30276 1.05672 0.77256 0.75178 0.73220 1.93553 1.84648 1.58460 1.58857 1.93543 1.47906 1.70286 1.83529 1.30444 1.16752 1.13337 1.11598 1.18940 0.98205 0.94131 0.89509 1.21006 1.13805 1.22699 0.97892 0.92171 1.25045 0.97483 0.96984 0.94880 1.69967 1.41161 1.37658 1.04152 0.86458 0.82281 0.80114 0.78764 1.19619 1.20770 1.20758 0.91949 0.91368 0.90170 0.88503 0.87044 0.84815 0.84810 0.84769 0.85149 0.75552 0.86602 0.86583 0.94898 0.94846 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.52 37.16 0.35 -1.26 16 2 C 0.16 1.73 2.67 -67.93 -0.18 1.55 16 3 H 0.09 1.13 7.15 -51.93 -0.37 0.76 16 4 C -0.05 -0.48 5.38 -27.89 -0.15 -0.63 16 5 C 0.09 1.12 6.27 -13.91 -0.09 1.04 16 6 N -0.46 -6.62 10.57 -9.09 -0.10 -6.71 16 7 C 0.09 1.25 7.00 -84.96 -0.59 0.66 16 8 C -0.06 -0.80 10.05 -39.29 -0.39 -1.19 16 9 C -0.11 -1.17 9.94 -40.12 -0.40 -1.57 16 10 C -0.10 -1.08 10.04 -39.59 -0.40 -1.48 16 11 C -0.07 -0.85 10.07 -39.39 -0.40 -1.25 16 12 C -0.18 -2.48 6.56 -38.55 -0.25 -2.74 16 13 S 0.10 1.18 23.04 -107.50 -2.48 -1.30 16 14 N -1.13 -14.44 5.01 -4.89 -0.02 -14.46 16 15 S 2.59 47.57 5.38 -107.50 -0.58 47.00 16 16 O -0.96 -20.31 18.08 -57.54 -1.04 -21.35 16 17 O -0.96 -19.96 17.11 -57.54 -0.98 -20.94 16 18 C -0.59 -11.98 5.90 37.16 0.22 -11.76 16 19 C 0.03 0.82 4.98 -27.88 -0.14 0.68 16 20 C -0.51 -14.57 9.11 -34.44 -0.31 -14.88 16 21 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 24 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.97 7.42 -51.93 -0.39 0.58 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.41 4.30 8.80 -34.47 -0.30 3.99 16 38 H 0.12 2.21 7.44 -51.93 -0.39 1.82 16 39 H 0.12 2.26 8.14 -51.93 -0.42 1.84 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -36.77 382.35 -12.19 -48.96 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.64 Total: 3.84 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -2.83 Total: -31.25 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.62 Total: -47.26 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -2.02 Total: -42.29 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 48.75 SS G_CDS: -3.06 Total: 45.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.77 -12.19 -48.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084641024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.729 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds