Wall clock time and date at job start Tue Mar 31 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.47175 * 2 1 4 4 C 1.52995 * 109.47499 * 239.99761 * 2 1 3 5 5 C 1.50694 * 109.47733 * 175.00348 * 4 2 1 6 6 N 1.27923 * 124.24314 * 89.97040 * 5 4 2 7 7 C 1.34668 * 117.85126 * 180.02562 * 6 5 4 8 8 C 1.40960 * 129.69343 * 180.02562 * 7 6 5 9 9 C 1.36185 * 120.42591 * 179.97438 * 8 7 6 10 10 C 1.38790 * 120.77857 * 359.97438 * 9 8 7 11 11 C 1.37658 * 120.06491 * 0.02562 * 10 9 8 12 12 C 1.39335 * 119.95334 * 359.97438 * 11 10 9 13 13 S 1.70655 * 124.23389 * 269.99981 * 5 4 2 14 14 N 1.46503 * 109.47114 * 119.99500 * 2 1 3 15 15 S 1.65603 * 120.00125 * 264.99823 * 14 2 1 16 16 O 1.42099 * 104.27652 * 181.06963 * 15 14 2 17 17 O 1.42098 * 104.27643 * 308.93273 * 15 14 2 18 18 C 1.81407 * 104.44763 * 64.99961 * 15 14 2 19 19 C 1.52999 * 109.47135 * 179.97438 * 18 15 14 20 20 C 1.50692 * 109.46998 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00531 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99986 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00338 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99998 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46922 * 89.99974 * 24 22 20 26 26 H 1.48494 * 109.47434 * 210.00175 * 24 22 20 27 27 H 1.48505 * 109.47029 * 330.00129 * 24 22 20 28 28 H 1.09003 * 109.47323 * 60.00108 * 1 2 3 29 29 H 1.08997 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47173 * 300.00420 * 1 2 3 31 31 H 1.09001 * 109.47151 * 54.99421 * 4 2 1 32 32 H 1.09003 * 109.46651 * 295.00563 * 4 2 1 33 33 H 1.07999 * 119.78929 * 359.97401 * 8 7 6 34 34 H 1.08000 * 119.61107 * 179.70192 * 9 8 7 35 35 H 1.08003 * 119.96518 * 180.02562 * 10 9 8 36 36 H 1.08001 * 120.01862 * 180.02562 * 11 10 9 37 37 H 0.96997 * 119.99908 * 85.00149 * 14 2 1 38 38 H 1.08994 * 109.47138 * 300.00033 * 18 15 14 39 39 H 1.09003 * 109.46681 * 59.99702 * 18 15 14 40 40 H 1.09003 * 109.47279 * 300.00730 * 19 18 15 41 41 H 1.09001 * 109.46851 * 60.00326 * 19 18 15 42 42 H 0.96996 * 120.00117 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5418 -0.6150 -1.3126 6 7 4.3461 -1.4610 -0.7891 7 6 5.6675 -1.2392 -0.9236 8 6 6.7598 -1.9968 -0.4546 9 6 8.0365 -1.5926 -0.7022 10 6 8.2873 -0.4310 -1.4192 11 6 7.2401 0.3288 -1.8895 12 6 5.9273 -0.0693 -1.6457 13 16 4.3828 0.6493 -2.0914 14 7 2.0182 -0.6905 1.1963 15 16 2.4121 0.1774 2.5505 16 8 2.8605 -0.8027 3.4767 17 8 3.2874 1.1908 2.0750 18 6 0.8407 0.8992 3.0985 19 6 1.0750 1.7344 4.3588 20 6 -0.2305 2.3335 4.8143 21 1 -1.1369 2.1378 4.2606 22 6 -0.2680 3.1315 5.9380 23 7 -1.4074 3.6540 6.3359 24 14 1.2998 3.4707 6.8954 25 1 1.9556 4.6889 6.3558 26 1 0.9696 3.6796 8.3280 27 1 2.2206 2.3131 6.7634 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6053 -0.2619 -2.1369 32 1 1.7515 -1.7715 -1.2054 33 1 6.5831 -2.9037 0.1047 34 1 8.8636 -2.1806 -0.3326 35 1 9.3050 -0.1229 -1.6084 36 1 7.4361 1.2323 -2.4477 37 1 2.1109 -1.6561 1.1950 38 1 0.4386 1.5354 2.3101 39 1 0.1315 0.1012 3.3184 40 1 1.4770 1.0978 5.1470 41 1 1.7843 2.5324 4.1391 42 1 -1.4337 4.2157 7.1262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084641026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:06 Heat of formation + Delta-G solvation = -27.897497 kcal Electronic energy + Delta-G solvation = -26598.491409 eV Core-core repulsion = 22796.788263 eV Total energy + Delta-G solvation = -3801.703145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 354.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55503 -37.99794 -36.72306 -36.30899 -35.51579 -33.96891 -31.54248 -31.49342 -31.35033 -29.85418 -27.83042 -25.95448 -24.29407 -22.92085 -21.90842 -21.27017 -20.89678 -19.12889 -18.71498 -17.73665 -16.97201 -16.75555 -16.30182 -15.85721 -15.58235 -15.41026 -15.03828 -14.85990 -14.31213 -14.25833 -14.04893 -13.81568 -13.60768 -13.08410 -12.82998 -12.73493 -12.59839 -12.27489 -12.06599 -11.98477 -11.85922 -11.68181 -11.64975 -11.43149 -11.25912 -11.21928 -11.08992 -11.03357 -10.45038 -10.32247 -10.16558 -9.87350 -9.75945 -9.50237 -9.20337 -8.80334 -8.66668 -8.31033 -6.17194 -4.18318 0.21848 0.69230 0.91426 1.06785 1.54122 2.15382 3.02922 3.26408 3.33765 3.38632 3.46769 3.62714 4.17072 4.34027 4.35704 4.46802 4.52610 4.63840 4.71515 4.81171 4.94331 5.05880 5.09622 5.11105 5.14988 5.31613 5.34398 5.42867 5.46766 5.58267 5.62745 5.66237 5.89752 5.96178 6.02665 6.06140 6.12379 6.31322 6.45192 6.81305 6.92737 7.11078 7.46289 7.54313 8.35862 8.83722 9.42768 10.95142 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.002937 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.518547 B = 9529.850079 C =10380.023004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.151 3.849 3 H 0.096 0.904 4 C -0.052 4.052 5 C 0.101 3.899 6 N -0.461 5.461 7 C 0.085 3.915 8 C -0.065 4.065 9 C -0.109 4.109 10 C -0.105 4.105 11 C -0.071 4.071 12 C -0.182 4.182 13 S 0.103 5.897 14 N -1.116 6.116 15 S 2.586 3.414 16 O -0.966 6.966 17 O -0.965 6.965 18 C -0.585 4.585 19 C -0.007 4.007 20 C -0.519 4.519 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.896 5.896 24 Si 0.868 3.132 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.262 1.262 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.654 -10.104 -21.735 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.041 3.959 3 H 0.114 0.886 4 C -0.095 4.095 5 C -0.184 4.184 6 N -0.174 5.174 7 C -0.035 4.035 8 C -0.085 4.085 9 C -0.130 4.130 10 C -0.127 4.127 11 C -0.094 4.094 12 C -0.301 4.301 13 S 0.360 5.640 14 N -0.873 5.873 15 S 2.683 3.317 16 O -0.956 6.956 17 O -0.955 6.955 18 C -0.718 4.718 19 C -0.046 4.046 20 C -0.558 4.558 21 H 0.096 0.904 22 C -0.131 4.131 23 N -0.533 5.533 24 Si 0.694 3.306 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.186 1.186 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.251 0.749 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.846 -9.314 -21.525 26.741 hybrid contribution 0.713 -0.564 0.903 1.281 sum 13.559 -9.879 -20.622 26.584 Atomic orbital electron populations 1.22479 0.93944 1.03598 1.03862 1.20776 0.94408 0.96734 0.83949 0.88622 1.20762 0.85088 1.04350 0.99279 1.26574 1.00920 0.93500 0.97367 1.66114 1.01536 1.29686 1.20020 1.19195 0.90036 0.94420 0.99846 1.20429 0.90009 0.99343 0.98756 1.20732 0.96384 0.97069 0.98782 1.21127 0.98824 0.94887 0.97868 1.20349 0.89132 0.99913 1.00000 1.23883 0.98795 1.00417 1.07036 1.83869 0.95734 1.28670 1.55719 1.55756 1.84231 1.19896 1.27461 1.05690 0.78217 0.74604 0.73185 1.93557 1.80438 1.59202 1.62432 1.93550 1.62253 1.60336 1.79393 1.30424 1.19409 1.11765 1.10187 1.19406 1.00197 0.94800 0.90219 1.20838 0.93029 1.30233 1.11653 0.90359 1.24976 0.96180 0.95026 0.96873 1.69875 1.25224 1.33047 1.25202 0.86945 0.84146 0.79760 0.79741 1.19647 1.20713 1.18648 0.90892 0.91281 0.90644 0.87804 0.87601 0.84769 0.84798 0.84804 0.85204 0.74882 0.85606 0.85386 0.95011 0.95430 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.48 37.15 0.35 -1.14 16 2 C 0.15 1.56 2.80 -67.94 -0.19 1.37 16 3 H 0.10 1.08 7.48 -51.93 -0.39 0.69 16 4 C -0.05 -0.45 5.38 -27.89 -0.15 -0.60 16 5 C 0.10 1.20 6.27 -13.91 -0.09 1.12 16 6 N -0.46 -6.40 10.57 -9.09 -0.10 -6.49 16 7 C 0.09 1.17 7.00 -84.96 -0.59 0.58 16 8 C -0.06 -0.74 10.05 -39.29 -0.39 -1.13 16 9 C -0.11 -0.98 9.94 -40.12 -0.40 -1.37 16 10 C -0.11 -0.90 10.04 -39.59 -0.40 -1.30 16 11 C -0.07 -0.72 10.07 -39.39 -0.40 -1.12 16 12 C -0.18 -2.29 6.56 -38.55 -0.25 -2.55 16 13 S 0.10 1.16 23.11 -107.50 -2.48 -1.33 16 14 N -1.12 -14.39 5.07 -4.90 -0.02 -14.41 16 15 S 2.59 45.96 5.44 -107.50 -0.58 45.38 16 16 O -0.97 -20.14 18.08 -57.54 -1.04 -21.18 16 17 O -0.97 -19.73 17.39 -57.54 -1.00 -20.73 16 18 C -0.58 -10.70 5.16 37.16 0.19 -10.51 16 19 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 20 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 21 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 24 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.74 5.78 -51.93 -0.30 0.44 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.42 4.80 8.80 -34.47 -0.30 4.50 16 38 H 0.13 2.03 6.77 -51.93 -0.35 1.68 16 39 H 0.13 2.12 8.14 -51.92 -0.42 1.69 16 40 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 41 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -37.45 376.59 -11.81 -49.27 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.50 Total: 2.81 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: -2.86 Total: -29.72 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.65 Total: -47.14 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -2.04 Total: -41.91 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: 47.12 SS G_CDS: -3.07 Total: 44.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.45 -11.81 -49.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084641026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.370 kcal (2) G-P(sol) polarization free energy of solvation -37.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds