Wall clock time and date at job start Tue Mar 31 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47371 * 2 1 4 4 C 1.34229 * 117.00158 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99670 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00041 * 180.02562 * 4 3 2 7 7 N 1.46496 * 109.46840 * 184.68261 * 6 4 3 8 8 C 1.36943 * 120.00066 * 273.02580 * 7 6 4 9 9 H 1.08000 * 119.99474 * 30.76399 * 8 7 6 10 10 C 1.38811 * 120.00284 * 210.76297 * 8 7 6 11 11 N 1.31622 * 120.00067 * 31.44985 * 10 8 7 12 12 Si 1.86799 * 119.99977 * 211.45048 * 10 8 7 13 13 H 1.48504 * 109.47040 * 89.99989 * 12 10 8 14 14 H 1.48497 * 109.47039 * 209.99664 * 12 10 8 15 15 H 1.48497 * 109.47081 * 329.99925 * 12 10 8 16 16 C 1.46504 * 120.00118 * 93.03431 * 7 6 4 17 17 H 1.08998 * 109.47297 * 136.46832 * 16 7 6 18 18 C 1.52996 * 109.47051 * 16.46514 * 16 7 6 19 19 C 1.50702 * 109.46685 * 256.46433 * 16 7 6 20 20 C 1.38275 * 119.99164 * 83.71774 * 19 16 7 21 21 C 1.38217 * 120.01587 * 180.02562 * 20 19 16 22 22 C 1.38238 * 120.01520 * 359.95277 * 21 20 19 23 23 C 1.38310 * 119.98538 * 359.77464 * 22 21 20 24 24 Br 1.89104 * 120.00869 * 180.25012 * 23 22 21 25 25 C 1.38190 * 119.99751 * 263.69287 * 19 16 7 26 26 H 1.09003 * 109.46747 * 299.99872 * 1 2 3 27 27 H 1.08995 * 109.47161 * 59.99707 * 1 2 3 28 28 H 1.08994 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46747 * 240.00128 * 2 1 3 30 30 H 1.08996 * 109.47198 * 120.00847 * 2 1 3 31 31 H 1.09001 * 109.47185 * 64.68289 * 6 4 3 32 32 H 1.08996 * 109.46873 * 304.67958 * 6 4 3 33 33 H 0.96997 * 120.00072 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.47144 * 179.74793 * 18 16 7 35 35 H 1.08999 * 109.46956 * 299.74466 * 18 16 7 36 36 H 1.08999 * 109.47370 * 59.74665 * 18 16 7 37 37 H 1.07997 * 119.99036 * 0.02562 * 20 19 16 38 38 H 1.08003 * 119.98923 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.00640 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.00750 * 359.97438 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3795 2.8624 -0.1135 8 6 6.1478 2.7272 1.0120 9 1 5.7596 2.1995 1.8706 10 6 7.4255 3.2684 1.0493 11 7 7.6963 4.3639 0.3718 12 14 8.7607 2.4419 2.0610 13 1 9.4751 1.4480 1.2201 14 1 9.7226 3.4659 2.5419 15 1 8.1459 1.7548 3.2250 16 6 6.0163 2.9322 -1.4310 17 1 6.8844 3.5894 -1.3807 18 6 5.0181 3.4832 -2.4513 19 6 6.4542 1.5528 -1.8510 20 6 5.5519 0.6940 -2.4513 21 6 5.9528 -0.5715 -2.8362 22 6 7.2563 -0.9789 -2.6220 23 6 8.1606 -0.1182 -2.0266 24 35 9.9457 -0.6723 -1.7397 25 6 7.7574 1.1464 -1.6365 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.6541 3.4405 0.9294 32 1 3.5190 3.4970 -0.8445 33 1 8.5890 4.7423 0.3982 34 1 5.4933 3.5394 -3.4307 35 1 4.1520 2.8236 -2.5050 36 1 4.6979 4.4791 -2.1452 37 1 4.5337 1.0122 -2.6195 38 1 5.2476 -1.2421 -3.3047 39 1 7.5696 -1.9676 -2.9231 40 1 8.4623 1.8174 -1.1684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089983721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:38 Heat of formation + Delta-G solvation = -31.811567 kcal Electronic energy + Delta-G solvation = -24657.174204 eV Core-core repulsion = 21098.358406 eV Total energy + Delta-G solvation = -3558.815798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.76596 -38.84610 -36.52716 -35.44329 -32.43950 -31.73873 -31.39975 -30.95754 -29.21213 -28.03506 -27.26689 -23.90779 -23.30231 -22.10275 -21.82764 -20.41288 -19.18880 -17.23562 -16.94385 -16.36102 -15.95387 -15.47583 -15.07201 -14.53159 -14.43333 -14.23489 -13.66320 -13.45517 -13.32148 -12.86920 -12.77162 -12.62263 -12.48981 -11.87595 -11.73232 -11.48916 -11.34220 -11.19430 -10.98461 -10.89040 -10.83276 -10.63813 -10.30235 -10.13224 -10.08121 -10.05501 -9.90911 -9.78663 -9.64752 -8.65891 -8.19927 -8.01058 -6.93999 -5.99972 -3.43329 1.76111 1.96994 2.12668 3.07745 3.24839 3.39540 3.44706 3.50943 4.23253 4.45490 5.05508 5.08694 5.14649 5.28627 5.31225 5.35896 5.43209 5.49569 5.63893 5.78050 5.86173 5.90656 5.95429 6.01411 6.06851 6.07954 6.11627 6.22109 6.32229 6.41912 6.56527 6.64822 6.81986 6.99681 7.09791 7.14650 7.44693 7.57646 7.72974 8.20283 8.63528 8.94783 9.58866 10.08824 11.00744 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.004972 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.768282 B = 5629.827478 C = 6986.699504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.376 6.376 4 C 0.414 3.586 5 O -0.485 6.485 6 C 0.147 3.853 7 N -0.539 5.539 8 C -0.263 4.263 9 H 0.064 0.936 10 C 0.026 3.974 11 N -0.870 5.870 12 Si 0.873 3.127 13 H -0.272 1.272 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.188 3.812 17 H 0.115 0.885 18 C -0.156 4.156 19 C -0.052 4.052 20 C -0.080 4.080 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.092 4.092 24 Br -0.078 7.078 25 C -0.067 4.067 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.258 0.742 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -6.558 -7.062 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.294 6.294 4 C 0.252 3.748 5 O -0.369 6.369 6 C 0.016 3.984 7 N -0.256 5.256 8 C -0.392 4.392 9 H 0.082 0.918 10 C -0.175 4.175 11 N -0.511 5.511 12 Si 0.701 3.299 13 H -0.198 1.198 14 H -0.217 1.217 15 H -0.202 1.202 16 C 0.083 3.917 17 H 0.132 0.868 18 C -0.213 4.213 19 C -0.055 4.055 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.130 4.130 23 C -0.171 4.171 24 Br 0.007 6.993 25 C -0.087 4.087 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.569 -6.930 -6.942 10.821 hybrid contribution 0.376 -0.952 0.632 1.203 sum -4.193 -7.882 -6.310 10.933 Atomic orbital electron populations 1.21770 0.93552 1.02213 1.03120 1.22777 0.94577 0.82337 1.01784 1.86604 1.26993 1.30711 1.85078 1.26856 0.79227 0.96242 0.72493 1.90641 1.59892 1.42989 1.43417 1.20635 0.86552 0.87767 1.03410 1.43692 0.97969 1.81633 1.02340 1.18906 0.96809 1.29673 0.93789 0.91777 1.24771 0.99341 0.94759 0.98656 1.70121 1.20888 1.15880 1.44176 0.86764 0.82434 0.79964 0.80746 1.19801 1.21704 1.20167 1.19823 0.98003 0.90695 0.83218 0.86780 1.22140 0.99260 1.00888 0.99039 1.20835 0.91885 0.99296 0.93522 1.20970 0.98631 0.93328 0.96987 1.20899 0.95133 0.96505 1.01734 1.20789 0.93280 0.98555 1.00390 1.21660 0.90414 0.97771 1.07241 1.96570 1.15604 1.90903 1.96257 1.21052 0.96945 0.93809 0.96938 0.91762 0.91809 0.91038 0.92152 0.92083 0.88793 0.89388 0.93188 0.92637 0.93651 0.91813 0.87149 0.86629 0.86364 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.38 -6.21 10.22 -39.26 -0.40 -6.61 16 4 C 0.41 7.93 8.01 36.01 0.29 8.21 16 5 O -0.49 -10.76 14.15 -18.75 -0.27 -11.03 16 6 C 0.15 2.81 5.70 -5.19 -0.03 2.78 16 7 N -0.54 -12.22 2.03 -168.34 -0.34 -12.56 16 8 C -0.26 -6.83 9.16 -15.06 -0.14 -6.97 16 9 H 0.06 1.76 8.00 -52.49 -0.42 1.34 16 10 C 0.03 0.69 4.63 -17.43 -0.08 0.61 16 11 N -0.87 -22.97 11.55 55.49 0.64 -22.33 16 12 Si 0.87 21.24 29.65 -169.99 -5.04 16.20 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C 0.19 3.99 2.69 -69.08 -0.19 3.80 16 17 H 0.12 2.76 5.50 -51.93 -0.29 2.47 16 18 C -0.16 -2.65 7.35 37.16 0.27 -2.37 16 19 C -0.05 -1.08 4.90 -104.62 -0.51 -1.59 16 20 C -0.08 -1.50 7.38 -39.58 -0.29 -1.79 16 21 C -0.12 -2.11 10.05 -39.59 -0.40 -2.51 16 22 C -0.11 -1.92 9.79 -39.56 -0.39 -2.30 16 23 C -0.09 -1.79 6.22 -39.51 -0.25 -2.03 16 24 Br -0.08 -1.38 33.70 -68.01 -2.29 -3.67 16 25 C -0.07 -1.44 9.42 -39.56 -0.37 -1.81 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.09 1.76 8.06 -51.93 -0.42 1.34 16 32 H 0.09 1.46 5.49 -51.93 -0.29 1.17 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.31 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.71 5.50 -51.93 -0.29 0.43 16 36 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 37 H 0.11 1.95 6.36 -52.49 -0.33 1.62 16 38 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 2.98 7.82 -52.49 -0.41 2.57 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -28.55 352.10 -9.22 -37.77 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.36 Total: 2.95 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.47 Total: -6.03 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.30 Total: -34.89 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.67 Total: -17.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.04 Total: 16.20 kcal Atomic # 35 Polarization: -1.38 SS G_CDS: -2.29 Total: -3.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.55 -9.22 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089983721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.956 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds