Wall clock time and date at job start Tue Mar 31 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47371 * 2 1 4 4 C 1.34229 * 117.00158 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99670 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00041 * 180.02562 * 4 3 2 7 7 N 1.46496 * 109.46840 * 184.68261 * 6 4 3 8 8 C 1.36943 * 120.00066 * 273.02580 * 7 6 4 9 9 H 1.08000 * 119.99474 * 30.76399 * 8 7 6 10 10 C 1.38811 * 120.00284 * 210.76297 * 8 7 6 11 11 N 1.31622 * 120.00067 * 31.44985 * 10 8 7 12 12 Si 1.86799 * 119.99977 * 211.45048 * 10 8 7 13 13 H 1.48504 * 109.47040 * 89.99989 * 12 10 8 14 14 H 1.48497 * 109.47039 * 209.99664 * 12 10 8 15 15 H 1.48497 * 109.47081 * 329.99925 * 12 10 8 16 16 C 1.46504 * 120.00118 * 93.03431 * 7 6 4 17 17 H 1.08998 * 109.47297 * 136.46832 * 16 7 6 18 18 C 1.52996 * 109.47051 * 16.46514 * 16 7 6 19 19 C 1.50702 * 109.46685 * 256.46433 * 16 7 6 20 20 C 1.38275 * 119.99164 * 83.71774 * 19 16 7 21 21 C 1.38217 * 120.01587 * 180.02562 * 20 19 16 22 22 C 1.38238 * 120.01520 * 359.95277 * 21 20 19 23 23 C 1.38310 * 119.98538 * 359.77464 * 22 21 20 24 24 Br 1.89104 * 120.00869 * 180.25012 * 23 22 21 25 25 C 1.38190 * 119.99751 * 263.69287 * 19 16 7 26 26 H 1.09003 * 109.46747 * 299.99872 * 1 2 3 27 27 H 1.08995 * 109.47161 * 59.99707 * 1 2 3 28 28 H 1.08994 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46747 * 240.00128 * 2 1 3 30 30 H 1.08996 * 109.47198 * 120.00847 * 2 1 3 31 31 H 1.09001 * 109.47185 * 64.68289 * 6 4 3 32 32 H 1.08996 * 109.46873 * 304.67958 * 6 4 3 33 33 H 0.96997 * 120.00072 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.47144 * 179.74793 * 18 16 7 35 35 H 1.08999 * 109.46956 * 299.74466 * 18 16 7 36 36 H 1.08999 * 109.47370 * 59.74665 * 18 16 7 37 37 H 1.07997 * 119.99036 * 0.02562 * 20 19 16 38 38 H 1.08003 * 119.98923 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.00640 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.00750 * 359.97438 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3795 2.8624 -0.1135 8 6 6.1478 2.7272 1.0120 9 1 5.7596 2.1995 1.8706 10 6 7.4255 3.2684 1.0493 11 7 7.6963 4.3639 0.3718 12 14 8.7607 2.4419 2.0610 13 1 9.4751 1.4480 1.2201 14 1 9.7226 3.4659 2.5419 15 1 8.1459 1.7548 3.2250 16 6 6.0163 2.9322 -1.4310 17 1 6.8844 3.5894 -1.3807 18 6 5.0181 3.4832 -2.4513 19 6 6.4542 1.5528 -1.8510 20 6 5.5519 0.6940 -2.4513 21 6 5.9528 -0.5715 -2.8362 22 6 7.2563 -0.9789 -2.6220 23 6 8.1606 -0.1182 -2.0266 24 35 9.9457 -0.6723 -1.7397 25 6 7.7574 1.1464 -1.6365 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.6541 3.4405 0.9294 32 1 3.5190 3.4970 -0.8445 33 1 8.5890 4.7423 0.3982 34 1 5.4933 3.5394 -3.4307 35 1 4.1520 2.8236 -2.5050 36 1 4.6979 4.4791 -2.1452 37 1 4.5337 1.0122 -2.6195 38 1 5.2476 -1.2421 -3.3047 39 1 7.5696 -1.9676 -2.9231 40 1 8.4623 1.8174 -1.1684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089983721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:38 Heat of formation + Delta-G solvation = -44.606087 kcal Electronic energy + Delta-G solvation = -24657.729016 eV Core-core repulsion = 21098.358406 eV Total energy + Delta-G solvation = -3559.370610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24538 -40.31035 -38.04568 -36.97053 -34.19012 -33.24031 -32.70300 -32.30347 -30.70719 -29.48729 -28.89801 -25.66033 -24.56249 -23.44747 -23.27026 -21.85259 -20.82060 -18.93024 -18.44699 -17.78822 -17.34059 -16.88731 -16.82428 -16.17923 -16.06261 -15.68263 -15.30403 -14.84130 -14.73478 -14.34797 -14.03863 -13.98464 -13.62575 -13.51997 -13.03547 -12.94017 -12.79498 -12.73654 -12.47408 -12.42819 -12.33959 -12.30144 -12.04975 -11.74847 -11.66879 -11.47778 -11.33696 -11.30980 -11.17421 -10.56614 -9.68923 -9.47402 -8.79641 -7.95890 -5.40734 0.29462 0.50964 0.67138 1.35966 1.44556 1.49490 1.56743 1.94674 2.46966 2.79207 3.15518 3.65419 3.92177 4.02488 4.07499 4.12855 4.18975 4.28353 4.38671 4.42761 4.47687 4.54412 4.64398 4.66985 4.79826 4.84056 4.96589 4.98490 4.98973 5.16494 5.21850 5.26505 5.35368 5.52909 5.55796 5.68599 5.70813 5.90885 6.04768 6.34373 7.02762 7.16408 7.73374 8.19457 9.00404 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.004972 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.768282 B = 5629.827478 C = 6986.699504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.371 6.371 4 C 0.424 3.576 5 O -0.518 6.518 6 C 0.142 3.858 7 N -0.552 5.552 8 C -0.262 4.262 9 H 0.041 0.959 10 C 0.003 3.997 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.283 1.283 16 C 0.185 3.815 17 H 0.080 0.920 18 C -0.146 4.146 19 C -0.066 4.066 20 C -0.081 4.081 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.105 4.105 24 Br -0.068 7.068 25 C -0.093 4.093 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 -7.991 -8.507 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.288 6.288 4 C 0.264 3.736 5 O -0.405 6.405 6 C 0.013 3.987 7 N -0.270 5.270 8 C -0.392 4.392 9 H 0.059 0.941 10 C -0.197 4.197 11 N -0.527 5.527 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.208 1.208 16 C 0.080 3.920 17 H 0.097 0.903 18 C -0.203 4.203 19 C -0.070 4.070 20 C -0.100 4.100 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.184 4.184 24 Br 0.017 6.983 25 C -0.114 4.114 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.140 0.860 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.797 -8.360 -8.390 13.656 hybrid contribution 0.970 -0.597 1.069 1.562 sum -5.826 -8.958 -7.322 12.954 Atomic orbital electron populations 1.21781 0.90332 1.04031 1.03663 1.23100 0.97038 0.80555 1.01425 1.86569 1.25192 1.32638 1.84403 1.26464 0.79920 0.95572 0.71676 1.90630 1.60871 1.43886 1.45105 1.20789 0.84862 0.88287 1.04759 1.43723 0.99206 1.82061 1.01963 1.18792 0.97476 1.28556 0.94380 0.94138 1.24988 1.00072 0.95175 0.99498 1.70158 1.20733 1.16568 1.45213 0.86303 0.81538 0.79323 0.79686 1.20535 1.21482 1.20813 1.19738 0.97911 0.90766 0.83599 0.90261 1.22045 0.98777 1.01061 0.98421 1.20824 0.92104 0.99490 0.94565 1.21104 0.98652 0.93717 0.96525 1.21336 0.95562 0.96246 1.00396 1.21162 0.93085 0.99280 0.99058 1.21844 0.91551 0.97500 1.07542 1.96555 1.14914 1.90532 1.96295 1.20923 0.97159 0.94618 0.98702 0.91554 0.90925 0.88572 0.91953 0.93120 0.88754 0.86408 0.93514 0.91145 0.92087 0.91407 0.85951 0.82888 0.83506 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.29 71.98 0.74 -1.62 16 2 C 0.05 1.34 6.19 71.98 0.45 1.78 16 3 O -0.37 -11.45 10.22 -51.41 -0.53 -11.97 16 4 C 0.42 15.66 8.01 71.24 0.57 16.23 16 5 O -0.52 -22.50 14.15 21.98 0.31 -22.19 16 6 C 0.14 5.30 5.70 85.63 0.49 5.79 16 7 N -0.55 -25.12 2.03 -686.52 -1.40 -26.52 16 8 C -0.26 -13.96 9.16 84.03 0.77 -13.19 16 9 H 0.04 2.31 8.00 -2.91 -0.02 2.29 16 10 C 0.00 0.15 4.63 84.86 0.39 0.54 16 11 N -0.88 -48.16 11.55 21.65 0.25 -47.91 16 12 Si 0.90 44.83 29.65 68.60 2.03 46.86 16 13 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 15 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 16 C 0.19 7.88 2.69 44.24 0.12 8.00 16 17 H 0.08 3.96 5.50 -2.39 -0.01 3.95 16 18 C -0.15 -4.71 7.35 71.98 0.53 -4.19 16 19 C -0.07 -2.75 4.90 -19.87 -0.10 -2.85 16 20 C -0.08 -2.86 7.38 22.27 0.16 -2.70 16 21 C -0.12 -3.62 10.05 22.26 0.22 -3.39 16 22 C -0.11 -3.43 9.79 22.29 0.22 -3.22 16 23 C -0.11 -4.03 6.22 22.31 0.14 -3.89 16 24 Br -0.07 -2.36 33.70 -20.37 -0.69 -3.05 16 25 C -0.09 -4.08 9.42 22.28 0.21 -3.87 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.09 3.49 8.06 -2.39 -0.02 3.47 16 32 H 0.12 3.64 5.49 -2.39 -0.01 3.63 16 33 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.76 5.50 -2.39 -0.01 1.75 16 36 H 0.07 2.12 7.72 -2.39 -0.02 2.10 16 37 H 0.12 3.97 6.36 -2.91 -0.02 3.95 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.10 4.78 7.82 -2.91 -0.02 4.76 16 Total: -1.00 -63.05 352.10 5.95 -57.10 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.04 Total: 14.25 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.91 Total: -6.57 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.15 Total: -74.43 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.21 Total: -34.16 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 35 Polarization: -2.36 SS G_CDS: -0.69 Total: -3.05 kcal Total: -63.05 5.95 -57.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089983721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.499 kcal (2) G-P(sol) polarization free energy of solvation -63.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds