Wall clock time and date at job start Tue Mar 31 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86794 * 120.00161 * 2 1 4 4 H 1.48497 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47186 * 300.00520 * 3 2 1 6 6 H 1.48505 * 109.47107 * 60.00057 * 3 2 1 7 7 C 1.38794 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99925 * 168.11199 * 7 2 1 9 9 N 1.36854 * 120.00086 * 348.10756 * 7 2 1 10 10 C 1.46915 * 120.52067 * 328.28743 * 9 7 2 11 11 C 1.53426 * 107.85447 * 224.80282 * 10 9 7 12 12 C 1.52862 * 108.81738 * 296.80954 * 11 10 9 13 13 C 1.50588 * 110.46655 * 51.20703 * 12 11 10 14 14 C 1.39065 * 118.95835 * 159.48319 * 13 12 11 15 15 N 1.39933 * 119.91829 * 359.86626 * 14 13 12 16 16 C 1.34778 * 120.00320 * 210.40357 * 15 14 13 17 17 O 1.21593 * 119.99431 * 354.70115 * 16 15 14 18 18 N 1.34774 * 120.00037 * 174.69830 * 16 15 14 19 19 C 1.40069 * 119.99685 * 185.35089 * 18 16 15 20 20 C 1.38798 * 120.07663 * 19.54721 * 19 18 16 21 21 C 1.38151 * 119.95161 * 179.97438 * 20 19 18 22 22 C 1.38281 * 120.11328 * 0.02562 * 21 20 19 23 23 C 1.38273 * 120.15166 * 0.02562 * 22 21 20 24 24 C 1.38310 * 120.04827 * 359.69203 * 23 22 21 25 25 F 1.35094 * 120.05820 * 180.28058 * 24 23 22 26 26 C 1.38820 * 120.16836 * 179.88871 * 14 13 12 27 27 C 1.38231 * 120.11042 * 359.95426 * 26 14 13 28 28 C 1.38014 * 120.00292 * 0.08488 * 27 26 14 29 29 C 1.38645 * 121.52448 * 339.43205 * 13 12 11 30 30 H 0.96995 * 119.99938 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.79306 * 105.18929 * 10 9 7 32 32 H 1.09002 * 109.79134 * 344.40928 * 10 9 7 33 33 H 1.08996 * 109.58420 * 56.61732 * 11 10 9 34 34 H 1.09003 * 109.57863 * 176.88296 * 11 10 9 35 35 H 1.09006 * 109.30538 * 171.51227 * 12 11 10 36 36 H 1.09004 * 109.30888 * 290.89516 * 12 11 10 37 37 H 0.97000 * 119.99668 * 30.40448 * 15 14 13 38 38 H 0.97004 * 120.00110 * 5.35400 * 18 16 15 39 39 H 1.07996 * 120.02479 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.94164 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.92270 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.97671 * 180.02562 * 23 22 21 43 43 H 1.07994 * 119.94030 * 179.97438 * 26 14 13 44 44 H 1.07993 * 120.00159 * 180.02562 * 27 26 14 45 45 H 1.08001 * 119.91668 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7099 1.3463 -0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8912 2.3964 1.2125 7 6 2.0099 -1.2020 -0.0005 8 1 3.0725 -1.2119 -0.1932 9 7 1.3476 -2.3746 0.2432 10 6 0.1830 -2.4016 1.1382 11 6 0.3319 -3.6131 2.0677 12 6 0.3061 -4.8877 1.2243 13 6 1.2944 -4.7902 0.0923 14 6 1.7382 -5.9590 -0.5167 15 7 1.2675 -7.1996 -0.0724 16 6 2.0528 -8.2910 -0.1654 17 8 3.1313 -8.2183 -0.7222 18 7 1.6426 -9.4630 0.3588 19 6 2.5033 -10.5681 0.3620 20 6 3.8714 -10.3847 0.2162 21 6 4.7179 -11.4765 0.2203 22 6 4.2046 -12.7518 0.3689 23 6 2.8423 -12.9397 0.5135 24 6 1.9895 -11.8509 0.5161 25 9 0.6590 -12.0338 0.6630 26 6 2.6474 -5.8982 -1.5639 27 6 3.1147 -4.6748 -2.0064 28 6 2.6788 -3.5112 -1.4057 29 6 1.7676 -3.5656 -0.3534 30 1 -0.4850 0.8400 0.0004 31 1 -0.7310 -2.4962 0.5519 32 1 0.1496 -1.4856 1.7282 33 1 1.2791 -3.5485 2.6032 34 1 -0.4912 -3.6288 2.7821 35 1 0.5612 -5.7410 1.8528 36 1 -0.6950 -5.0304 0.8173 37 1 0.3760 -7.2741 0.3026 38 1 0.7514 -9.5412 0.7337 39 1 4.2738 -9.3893 0.0996 40 1 5.7824 -11.3336 0.1072 41 1 4.8691 -13.6031 0.3713 42 1 2.4445 -13.9370 0.6298 43 1 2.9899 -6.8082 -2.0339 44 1 3.8217 -4.6295 -2.8215 45 1 3.0451 -2.5562 -1.7523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095395096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:11 Heat of formation + Delta-G solvation = 4.865199 kcal Electronic energy + Delta-G solvation = -30707.158863 eV Core-core repulsion = 26411.459566 eV Total energy + Delta-G solvation = -4295.699298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.144 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.12834 -41.00992 -39.40358 -38.49012 -36.22461 -34.92230 -34.46978 -33.38439 -31.32643 -30.74320 -29.78922 -29.25783 -27.61883 -25.79208 -23.85908 -23.36850 -22.83431 -22.41919 -21.56656 -20.36303 -19.14367 -18.52485 -18.21515 -17.60098 -17.10766 -16.28727 -16.21481 -15.92517 -15.46903 -15.27832 -14.88952 -14.82320 -14.60592 -14.38593 -14.11943 -13.95319 -13.48566 -13.27590 -12.98204 -12.81861 -12.69538 -12.59176 -12.20870 -12.10716 -11.86503 -11.65627 -11.47202 -11.17259 -10.99387 -10.89162 -10.76367 -10.53331 -10.33223 -10.14939 -9.99972 -9.64643 -9.45852 -9.09461 -9.01289 -8.45170 -8.27595 -7.37359 -6.58205 -6.30124 -3.82877 0.90779 1.04352 2.17712 2.39675 2.62661 3.07414 3.16459 3.18972 3.22803 3.52994 3.94678 3.97728 4.07514 4.50947 4.70575 4.73727 4.94599 5.00841 5.04542 5.14165 5.31024 5.50492 5.59188 5.67932 5.76476 5.90926 5.95981 5.97198 6.03055 6.17103 6.21277 6.27953 6.34537 6.36268 6.45316 6.49362 6.62282 6.64254 6.77656 6.89794 6.94109 7.16561 7.19457 7.30662 7.37784 7.47330 7.63738 7.86818 7.90808 8.14808 8.43115 8.66418 9.27929 9.68087 10.64460 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.002223 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.031571 B =12592.661326 C =13297.486571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.029 3.971 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.090 0.910 9 N -0.450 5.450 10 C 0.149 3.851 11 C -0.141 4.141 12 C -0.056 4.056 13 C -0.223 4.223 14 C 0.196 3.804 15 N -0.668 5.668 16 C 0.704 3.296 17 O -0.547 6.547 18 N -0.682 5.682 19 C 0.149 3.851 20 C -0.116 4.116 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.132 4.132 24 C 0.054 3.946 25 F -0.142 7.142 26 C -0.229 4.229 27 C -0.063 4.063 28 C -0.209 4.209 29 C 0.234 3.766 30 H 0.268 0.732 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.402 0.598 38 H 0.409 0.591 39 H 0.170 0.830 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.127 0.873 44 H 0.106 0.894 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -20.035 3.319 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.176 4.176 3 Si 0.749 3.251 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.108 0.892 9 N -0.138 5.138 10 C 0.025 3.975 11 C -0.180 4.180 12 C -0.093 4.093 13 C -0.232 4.232 14 C 0.102 3.898 15 N -0.313 5.313 16 C 0.405 3.595 17 O -0.422 6.422 18 N -0.327 5.327 19 C 0.051 3.949 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.151 4.151 24 C 0.031 3.969 25 F -0.120 7.120 26 C -0.252 4.252 27 C -0.083 4.083 28 C -0.233 4.233 29 C 0.118 3.882 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.237 0.763 38 H 0.245 0.755 39 H 0.187 0.813 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.145 0.855 44 H 0.124 0.876 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.680 -19.433 2.995 19.844 hybrid contribution -0.981 0.710 0.392 1.272 sum 1.699 -18.723 3.387 19.102 Atomic orbital electron populations 1.70023 1.05874 1.27500 1.47778 1.25426 0.95538 0.99800 0.96793 0.85919 0.79752 0.81532 0.77896 1.19230 1.20681 1.20664 1.19495 0.92791 0.82745 1.47898 0.89220 1.42621 1.27733 1.03772 1.39630 1.21332 0.88766 0.96274 0.91140 1.21976 1.01379 0.96444 0.98189 1.20016 0.97033 0.97583 0.94676 1.18524 1.10210 0.90683 1.03810 1.16985 0.97441 0.81033 0.94306 1.42502 1.17867 1.06336 1.64642 1.15835 0.84301 0.79822 0.79493 1.90820 1.21814 1.83195 1.46420 1.42569 1.18107 1.09167 1.62901 1.17611 0.90824 0.84336 1.02112 1.21823 0.90175 1.02532 0.99114 1.21209 1.00341 0.91905 0.98852 1.20991 0.94178 0.97737 1.01105 1.20920 0.93653 0.97642 1.02869 1.17336 0.77711 0.92437 1.09393 1.91463 1.30850 1.95953 1.93770 1.20636 1.05394 0.98270 1.00926 1.20560 0.97794 0.91907 0.98037 1.20674 1.04874 0.98140 0.99593 1.17544 0.94187 0.85961 0.90496 0.92221 0.93080 0.89825 0.92105 0.92011 0.92985 0.92702 0.76259 0.75510 0.81309 0.85010 0.85154 0.84606 0.85506 0.87585 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.90 11.35 55.49 0.63 -22.27 16 2 C 0.03 0.72 5.01 -17.45 -0.09 0.64 16 3 Si 0.92 19.73 29.57 -169.99 -5.03 14.70 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.30 -7.71 8.47 -15.10 -0.13 -7.84 16 8 H 0.09 2.28 7.09 -52.49 -0.37 1.91 16 9 N -0.45 -10.97 2.96 -112.53 -0.33 -11.31 16 10 C 0.15 3.31 4.92 -3.60 -0.02 3.29 16 11 C -0.14 -2.55 6.12 -26.58 -0.16 -2.72 16 12 C -0.06 -0.94 4.98 -28.01 -0.14 -1.08 16 13 C -0.22 -4.46 5.78 -104.22 -0.60 -5.07 16 14 C 0.20 3.66 6.36 -83.64 -0.53 3.12 16 15 N -0.67 -9.76 4.86 -14.19 -0.07 -9.83 16 16 C 0.70 10.36 8.28 -86.92 -0.72 9.64 16 17 O -0.55 -9.57 10.35 5.28 0.05 -9.51 16 18 N -0.68 -7.93 5.36 -14.16 -0.08 -8.01 16 19 C 0.15 1.77 6.51 -83.58 -0.54 1.23 16 20 C -0.12 -1.40 8.79 -39.41 -0.35 -1.75 16 21 C -0.10 -0.98 10.04 -39.60 -0.40 -1.37 16 22 C -0.12 -0.97 10.04 -39.55 -0.40 -1.36 16 23 C -0.13 -1.14 10.02 -39.54 -0.40 -1.54 16 24 C 0.05 0.57 7.31 -39.25 -0.29 0.28 16 25 F -0.14 -1.51 16.75 2.25 0.04 -1.47 16 26 C -0.23 -4.50 8.74 -39.37 -0.34 -4.84 16 27 C -0.06 -1.25 10.04 -39.67 -0.40 -1.65 16 28 C -0.21 -4.64 9.21 -39.27 -0.36 -5.00 16 29 C 0.23 5.38 6.32 -83.74 -0.53 4.85 16 30 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.99 6.73 -51.93 -0.35 1.64 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.76 7.47 -51.93 -0.39 0.37 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.63 7.75 -40.82 -0.32 4.31 16 38 H 0.41 3.65 8.38 -40.82 -0.34 3.31 16 39 H 0.17 2.39 5.40 -52.49 -0.28 2.11 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 2.50 5.81 -52.49 -0.31 2.19 16 44 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.12 2.67 6.68 -52.49 -0.35 2.32 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -29.31 367.87 -10.85 -40.17 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.22 Total: 13.14 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -6.39 Total: -11.17 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.15 Total: -51.41 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.05 Total: -9.51 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.31 -10.85 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095395096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.032 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds