Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36010 * 126.36090 * 2 1 4 4 C 1.50703 * 124.94265 * 359.97438 * 3 2 1 5 5 N 1.46498 * 109.47212 * 269.72182 * 4 3 2 6 6 S 1.65602 * 119.99612 * 164.72359 * 5 4 3 7 7 O 1.42109 * 104.27511 * 181.34803 * 6 5 4 8 8 O 1.42098 * 104.28120 * 309.20801 * 6 5 4 9 9 C 1.81394 * 104.44973 * 65.28269 * 6 5 4 10 10 C 1.53003 * 109.47387 * 179.97438 * 9 6 5 11 11 C 1.53002 * 109.47130 * 179.97438 * 10 9 6 12 12 C 1.50692 * 109.47012 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00112 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00231 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00269 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47241 * 60.00170 * 16 14 12 18 18 H 1.48497 * 109.47563 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47390 * 300.00100 * 16 14 12 20 20 N 1.30115 * 110.10781 * 179.73671 * 3 2 1 21 21 C 1.35783 * 109.65092 * 0.26103 * 20 3 2 22 22 C 1.39769 * 133.54256 * 180.02562 * 21 20 3 23 23 C 1.37776 * 119.75366 * 179.97438 * 22 21 20 24 24 F 1.35101 * 119.76817 * 179.97438 * 23 22 21 25 25 C 1.38991 * 120.46938 * 0.02562 * 23 22 21 26 26 C 1.37814 * 120.43657 * 359.97438 * 25 23 22 27 27 C 1.38182 * 126.34764 * 180.18777 * 2 1 3 28 28 H 1.09000 * 109.46999 * 89.99332 * 1 2 3 29 29 H 1.08991 * 109.47731 * 210.00388 * 1 2 3 30 30 H 1.09007 * 109.46545 * 330.00338 * 1 2 3 31 31 H 1.08996 * 109.47013 * 149.72487 * 4 3 2 32 32 H 1.08999 * 109.47128 * 29.72701 * 4 3 2 33 33 H 0.97001 * 120.00384 * 345.00836 * 5 4 3 34 34 H 1.09009 * 109.47044 * 299.99503 * 9 6 5 35 35 H 1.09001 * 109.47747 * 59.99183 * 9 6 5 36 36 H 1.09000 * 109.46375 * 299.99213 * 10 9 6 37 37 H 1.08993 * 109.47045 * 59.99537 * 10 9 6 38 38 H 1.09003 * 109.47270 * 300.00013 * 11 10 9 39 39 H 1.09000 * 109.46896 * 60.00012 * 11 10 9 40 40 H 0.96993 * 120.00008 * 179.97438 * 15 14 12 41 41 H 1.08005 * 120.12355 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.78292 * 179.97438 * 25 23 22 43 43 H 1.07997 * 120.07122 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0953 0.0000 4 6 1.7883 2.5228 -0.0006 5 7 1.6386 2.9871 -1.3819 6 16 0.7756 4.3634 -1.7038 7 8 0.8177 4.4804 -3.1194 8 8 -0.4558 4.1728 -1.0207 9 6 1.7357 5.6918 -0.9266 10 6 1.0330 7.0312 -1.1574 11 6 1.8426 8.1516 -0.5013 12 6 1.1508 9.4708 -0.7292 13 1 0.2260 9.5066 -1.2859 14 6 1.6979 10.6321 -0.2261 15 7 2.8238 10.5885 0.4522 16 14 0.8401 12.2673 -0.5079 17 1 -0.5188 12.2229 0.0894 18 1 1.6251 13.3546 0.1298 19 1 0.7315 12.5245 -1.9665 20 7 3.5205 0.7311 0.0056 21 6 3.6010 -0.6243 0.0038 22 6 4.6694 -1.5254 0.0081 23 6 4.4209 -2.8806 0.0050 24 9 5.4534 -3.7519 0.0086 25 6 3.1155 -3.3578 -0.0029 26 6 2.0519 -2.4814 -0.0072 27 6 2.2840 -1.1130 -0.0036 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8898 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 2.5123 3.1515 0.5176 32 1 0.8263 2.5810 0.5087 33 1 2.0414 2.4863 -2.1084 34 1 1.8165 5.5033 0.1440 35 1 2.7327 5.7245 -1.3659 36 1 0.9528 7.2195 -2.2280 37 1 0.0360 6.9988 -0.7183 38 1 1.9226 7.9630 0.5693 39 1 2.8398 8.1841 -0.9401 40 1 3.2089 11.4055 0.8058 41 1 5.6860 -1.1608 0.0138 42 1 2.9335 -4.4223 -0.0057 43 1 1.0399 -2.8587 -0.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095400907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = -52.309535 kcal Electronic energy + Delta-G solvation = -27997.155167 eV Core-core repulsion = 23698.587443 eV Total energy + Delta-G solvation = -4298.567723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.20012 -42.70322 -37.81289 -37.05461 -35.94035 -35.43429 -34.76437 -34.72249 -32.22351 -30.85405 -30.08644 -27.86324 -27.46663 -26.79748 -23.77623 -22.93750 -22.63655 -20.82607 -20.65013 -19.43686 -18.48467 -17.92998 -17.55489 -17.14866 -16.64776 -16.51767 -16.16013 -15.82648 -15.73055 -15.57967 -15.08886 -14.77665 -14.52204 -14.43524 -14.13239 -13.76408 -13.64371 -13.60339 -13.28916 -12.96909 -12.63014 -12.33271 -12.17052 -12.08289 -11.98044 -11.95857 -11.85249 -11.67345 -11.30379 -10.92169 -10.91926 -10.84890 -10.51245 -10.44404 -10.00576 -9.97107 -9.39671 -9.15418 -8.78403 -8.57853 -8.42527 -6.07543 -4.10966 0.16443 0.40921 0.84406 2.02774 2.09329 2.77669 3.24112 3.30530 3.34873 3.35947 3.37572 3.75711 3.85178 3.94267 4.20536 4.24911 4.40349 4.42843 4.50886 4.65369 4.70179 4.72319 4.90468 4.98921 5.07385 5.09172 5.11719 5.18290 5.28708 5.35784 5.48999 5.66276 5.81510 5.82584 5.95417 6.20670 6.34260 6.38993 6.53413 6.61368 6.82529 7.35273 7.54048 7.63767 7.89984 8.30022 8.95022 9.53812 11.03533 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.001833 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.455541 B =15271.584578 C =16017.066762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.480 5.480 3 C 0.285 3.715 4 C 0.194 3.806 5 N -1.122 6.122 6 S 2.601 3.399 7 O -0.956 6.956 8 O -0.961 6.961 9 C -0.606 4.606 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.473 5.473 21 C 0.072 3.928 22 C -0.098 4.098 23 C 0.090 3.910 24 F -0.137 7.137 25 C -0.133 4.133 26 C -0.077 4.077 27 C 0.039 3.961 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.420 0.580 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -29.304 0.919 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.170 5.170 3 C 0.018 3.982 4 C 0.066 3.934 5 N -0.881 5.881 6 S 2.697 3.303 7 O -0.946 6.946 8 O -0.951 6.951 9 C -0.739 4.739 10 C -0.146 4.146 11 C -0.008 4.008 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.193 5.193 21 C -0.048 4.048 22 C -0.118 4.118 23 C 0.069 3.931 24 F -0.116 7.116 25 C -0.154 4.154 26 C -0.098 4.098 27 C -0.071 4.071 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.104 -28.580 0.689 28.666 hybrid contribution -0.108 0.177 -0.011 0.208 sum -2.213 -28.403 0.679 28.497 Atomic orbital electron populations 1.22168 0.75259 1.05319 1.04387 1.45229 1.07596 1.04733 1.59417 1.23414 0.85330 0.90445 0.98991 1.19724 1.02915 0.86380 0.84390 1.55839 1.74533 1.44752 1.12946 1.05409 0.75166 0.74801 0.74935 1.93603 1.86828 1.85661 1.28553 1.93562 1.40828 1.84396 1.76314 1.30536 1.14768 1.14964 1.13604 1.21519 0.99569 0.91238 1.02232 1.19062 0.95017 0.90847 0.95848 1.21204 1.08660 0.91836 1.34937 0.92426 1.25022 0.94983 0.99331 0.95033 1.69942 1.18859 1.28336 1.36180 0.86612 0.79573 0.83031 0.78536 1.20145 1.21244 1.20127 1.70478 1.17044 1.10385 1.21377 1.18615 0.91363 0.90245 1.04543 1.20083 0.99237 0.89821 1.02680 1.17162 0.84251 0.86537 1.05194 1.91515 1.57342 1.68526 1.94170 1.20848 0.90235 1.00698 1.03582 1.19745 0.99598 0.88340 1.02092 1.18909 0.91220 0.89448 1.07502 0.90023 0.89335 0.88409 0.87367 0.87869 0.74616 0.85279 0.84872 0.91506 0.91501 0.96056 0.96038 0.92802 0.83794 0.83870 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 10.96 59.85 0.66 1.01 16 2 N -0.48 -4.01 3.21 -118.49 -0.38 -4.39 16 3 C 0.28 2.79 7.25 -154.84 -1.12 1.67 16 4 C 0.19 1.62 6.43 -5.19 -0.03 1.58 16 5 N -1.12 -10.59 5.88 -11.66 -0.07 -10.66 16 6 S 2.60 33.10 5.46 -107.50 -0.59 32.51 16 7 O -0.96 -15.44 18.08 -57.54 -1.04 -16.49 16 8 O -0.96 -14.17 17.48 -57.54 -1.01 -15.17 16 9 C -0.61 -8.38 6.08 37.16 0.23 -8.15 16 10 C -0.11 -2.02 5.16 -26.73 -0.14 -2.16 16 11 C 0.03 0.75 4.97 -27.89 -0.14 0.61 16 12 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 N -0.47 -5.59 11.27 -8.24 -0.09 -5.69 16 21 C 0.07 0.79 7.23 -84.70 -0.61 0.18 16 22 C -0.10 -0.95 10.07 -39.18 -0.39 -1.35 16 23 C 0.09 0.78 7.28 -39.47 -0.29 0.50 16 24 F -0.14 -1.26 17.26 2.25 0.04 -1.22 16 25 C -0.13 -0.90 10.00 -39.46 -0.39 -1.30 16 26 C -0.08 -0.52 10.04 -39.53 -0.40 -0.92 16 27 C 0.04 0.36 6.87 -83.95 -0.58 -0.22 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.43 6.99 -51.92 -0.36 0.07 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.69 6.54 -51.93 -0.34 0.35 16 33 H 0.42 3.72 8.61 -34.47 -0.30 3.43 16 34 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 35 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -36.57 385.33 -10.85 -47.42 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.61 Total: -1.04 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -3.62 Total: -21.89 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.19 Total: -46.22 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -2.05 Total: -31.66 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 33.10 SS G_CDS: -0.59 Total: 32.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.57 -10.85 -47.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095400907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.886 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds