Wall clock time and date at job start Tue Mar 31 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37747 * 119.96243 * 2 1 4 4 C 1.39691 * 119.92377 * 179.97438 * 3 2 1 5 5 C 1.47666 * 120.07958 * 179.97438 * 4 3 2 6 6 O 1.21573 * 119.99988 * 27.48406 * 5 4 3 7 7 N 1.34780 * 120.00051 * 207.48086 * 5 4 3 8 8 C 1.46497 * 119.99984 * 2.70067 * 7 5 4 9 9 C 1.50702 * 109.47332 * 254.89122 * 8 7 5 10 10 H 1.07993 * 119.99944 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99717 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00363 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46980 * 59.99986 * 13 11 9 15 15 H 1.48494 * 109.47343 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47167 * 300.00362 * 13 11 9 17 17 C 1.46499 * 119.99991 * 182.70003 * 7 5 4 18 18 H 1.08998 * 109.47077 * 354.27683 * 17 7 5 19 19 C 1.53003 * 109.47124 * 234.27410 * 17 7 5 20 20 C 1.53005 * 109.46805 * 114.27602 * 17 7 5 21 21 C 1.52996 * 117.49583 * 184.99990 * 20 17 7 22 22 C 1.52997 * 60.03407 * 252.49727 * 21 20 17 23 23 C 1.39720 * 119.83848 * 0.27253 * 4 3 2 24 24 C 1.37708 * 119.92356 * 359.45063 * 23 4 3 25 25 C 1.39029 * 119.95999 * 179.97438 * 2 1 3 26 26 N 1.39864 * 119.92260 * 359.97438 * 25 2 1 27 27 C 1.34805 * 126.84840 * 227.64554 * 26 25 2 28 28 N 1.30818 * 108.01846 * 179.97438 * 27 26 25 29 29 C 1.33285 * 109.85013 * 0.02562 * 28 27 26 30 30 N 1.30726 * 109.01345 * 359.73504 * 29 28 27 31 31 H 1.09000 * 109.47012 * 95.29134 * 1 2 3 32 32 H 1.08999 * 109.47677 * 215.29569 * 1 2 3 33 33 H 1.09009 * 109.47319 * 335.29421 * 1 2 3 34 34 H 1.08001 * 120.04448 * 359.97438 * 3 2 1 35 35 H 1.09007 * 109.46908 * 14.89542 * 8 7 5 36 36 H 1.09004 * 109.47074 * 134.88728 * 8 7 5 37 37 H 0.97005 * 120.00272 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.46896 * 299.99944 * 19 17 7 39 39 H 1.08998 * 109.47238 * 60.00253 * 19 17 7 40 40 H 1.09002 * 109.47048 * 180.02562 * 19 17 7 41 41 H 1.09000 * 115.54831 * 330.66740 * 20 17 7 42 42 H 1.09001 * 117.50225 * 359.97438 * 21 20 17 43 43 H 1.08999 * 117.50152 * 145.00006 * 21 20 17 44 44 H 1.08999 * 117.50145 * 107.49882 * 22 21 20 45 45 H 1.08994 * 117.50350 * 252.52624 * 22 21 20 46 46 H 1.07997 * 120.03561 * 179.70029 * 23 4 3 47 47 H 1.08002 * 119.96410 * 180.29909 * 24 23 4 48 48 H 1.07999 * 125.98966 * 359.95649 * 27 26 25 49 49 H 1.08002 * 125.49757 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.1934 0.0000 4 6 3.5918 1.1924 0.0005 5 6 4.3328 2.4697 0.0000 6 8 3.8297 3.4645 0.4850 7 7 5.5668 2.5327 -0.5382 8 6 6.1493 1.3491 -1.1753 9 6 7.1988 0.7567 -0.2705 10 1 7.4104 1.2156 0.6839 11 6 7.8880 -0.3719 -0.6607 12 7 7.6300 -0.9311 -1.8227 13 14 9.1884 -1.1067 0.4612 14 1 8.5660 -1.4949 1.7524 15 1 9.7789 -2.3063 -0.1847 16 1 10.2543 -0.1025 0.7076 17 6 6.3257 3.7847 -0.4861 18 1 5.6980 4.5729 -0.0704 19 6 6.7648 4.1742 -1.8990 20 6 7.5602 3.5963 0.3979 21 6 8.4249 4.8276 0.6755 22 6 8.9328 3.7336 -0.2657 23 6 4.2862 -0.0200 -0.0047 24 6 3.5919 -1.2093 0.0011 25 6 2.2012 -1.2045 0.0005 26 7 1.4994 -2.4143 0.0016 27 6 1.7227 -3.4778 0.7994 28 7 0.8549 -4.4060 0.4887 29 6 0.0662 -3.9768 -0.4962 30 7 0.4181 -2.7614 -0.8247 31 1 -0.3633 -0.0948 -1.0233 32 1 -0.3634 -0.8387 0.5938 33 1 -0.3634 0.9337 0.4296 34 1 1.6550 2.1288 -0.0004 35 1 5.3671 0.6118 -1.3561 36 1 6.6058 1.6343 -2.1232 37 1 8.1152 -1.7249 -2.0974 38 1 7.3925 3.3859 -2.3146 39 1 5.8854 4.3084 -2.5288 40 1 7.3298 5.1055 -1.8601 41 1 7.4585 2.8622 1.1972 42 1 8.1145 5.7719 0.2280 43 1 8.8921 4.9036 1.6573 44 1 8.9563 3.9580 -1.3321 45 1 9.7338 3.0895 0.0970 46 1 5.3661 -0.0244 -0.0092 47 1 4.1280 -2.1468 0.0019 48 1 2.4847 -3.5507 1.5613 49 1 -0.7375 -4.5403 -0.9468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095401867.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:00 Heat of formation + Delta-G solvation = 138.648406 kcal Electronic energy + Delta-G solvation = -32073.798459 eV Core-core repulsion = 28005.079403 eV Total energy + Delta-G solvation = -4068.719055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27926 -40.19264 -38.65241 -37.24997 -35.11643 -33.92300 -32.84473 -32.59050 -31.30534 -30.21933 -29.28767 -27.62059 -26.66518 -24.97155 -23.98243 -22.92979 -22.41634 -21.88132 -21.58960 -21.12619 -19.69599 -18.34526 -18.07713 -16.85448 -16.61237 -16.13596 -15.79553 -15.58483 -15.17252 -14.74052 -14.66204 -14.22620 -14.20210 -14.03988 -13.83050 -13.50936 -13.31834 -13.13801 -12.64363 -12.53434 -12.46063 -12.39784 -11.89787 -11.87036 -11.67792 -11.38351 -11.31560 -11.08192 -11.03863 -10.97652 -10.77558 -10.54318 -10.42883 -10.13374 -9.94710 -9.89005 -9.84892 -9.59569 -9.37143 -9.12595 -8.80027 -8.61468 -8.21347 -7.84831 -6.36792 -4.44841 0.75508 1.55400 1.74577 2.28229 2.87921 3.11493 3.17501 3.19079 3.23243 3.65766 4.02946 4.17489 4.25213 4.39133 4.66634 4.86061 4.91040 4.97026 5.02581 5.10946 5.19745 5.37780 5.44228 5.51628 5.56890 5.66892 5.69568 5.71087 5.78645 5.82027 5.85778 5.97445 6.01674 6.14614 6.16622 6.23924 6.29059 6.33154 6.42398 6.48884 6.56739 6.60783 6.61221 6.66475 6.73290 6.79601 6.95935 7.14691 7.19557 7.38565 7.59322 7.83812 7.98592 8.20957 8.61443 8.82325 9.22305 10.67946 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003614 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.091064 B = 7746.193148 C = 9635.237599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.091 4.091 3 C -0.057 4.057 4 C -0.118 4.118 5 C 0.555 3.445 6 O -0.568 6.568 7 N -0.579 5.579 8 C 0.210 3.790 9 C -0.538 4.538 10 H 0.072 0.928 11 C 0.071 3.929 12 N -0.880 5.880 13 Si 0.890 3.110 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.175 3.825 18 H 0.091 0.909 19 C -0.161 4.161 20 C -0.135 4.135 21 C -0.196 4.196 22 C -0.165 4.165 23 C -0.077 4.077 24 C -0.122 4.122 25 C 0.139 3.861 26 N -0.322 5.322 27 C 0.264 3.736 28 N -0.545 5.545 29 C 0.193 3.807 30 N -0.309 5.309 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.136 0.864 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.269 0.731 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.209 0.791 47 H 0.133 0.867 48 H 0.221 0.779 49 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 1.038 2.345 6.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.076 4.076 4 C -0.121 4.121 5 C 0.344 3.656 6 O -0.450 6.450 7 N -0.308 5.308 8 C 0.091 3.909 9 C -0.576 4.576 10 H 0.090 0.910 11 C -0.134 4.134 12 N -0.517 5.517 13 Si 0.717 3.283 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.071 3.929 18 H 0.109 0.891 19 C -0.219 4.219 20 C -0.154 4.154 21 C -0.233 4.233 22 C -0.202 4.202 23 C -0.094 4.094 24 C -0.143 4.143 25 C 0.048 3.952 26 N -0.107 5.107 27 C -0.031 4.031 28 N -0.272 5.272 29 C -0.110 4.110 30 N -0.134 5.134 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.151 0.849 48 H 0.237 0.763 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.999 1.501 2.015 7.436 hybrid contribution 1.118 -0.710 0.523 1.424 sum -5.880 0.791 2.538 6.453 Atomic orbital electron populations 1.20648 0.90265 1.01990 1.02782 1.19550 0.96501 0.90970 1.02280 1.20962 0.92769 0.97210 0.96693 1.20136 0.93652 0.94209 1.04092 1.18190 0.81607 0.87490 0.78353 1.90685 1.69130 1.36738 1.48410 1.48110 1.14280 1.13277 1.55097 1.20214 0.94699 0.82106 0.93888 1.21489 1.20310 1.11073 1.04708 0.90989 1.24966 0.96708 0.96658 0.95094 1.69919 1.41082 1.21044 1.19621 0.86658 0.81991 0.78784 0.80824 1.19894 1.21097 1.19903 1.20322 0.91176 0.86598 0.94772 0.89118 1.22207 1.01530 1.01520 0.96597 1.22641 0.91474 0.99124 1.02111 1.23007 1.05747 0.93761 1.00815 1.22950 0.97839 1.00917 0.98463 1.23348 1.06040 0.89418 0.90609 1.21078 0.90379 1.00223 1.02578 1.17569 0.90277 0.81894 1.05441 1.47579 1.24357 1.12315 1.26438 1.26265 0.98491 0.82766 0.95621 1.70588 1.08683 1.30242 1.17695 1.26084 0.99663 0.91052 0.94205 1.78213 1.02849 1.16496 1.15880 0.90629 0.92248 0.91589 0.84590 0.92159 0.94550 0.92157 0.90711 0.92962 0.92189 0.87010 0.89519 0.89596 0.88602 0.89419 0.77485 0.84887 0.76290 0.76586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 8.86 36.00 0.32 -0.98 16 2 C -0.09 -1.38 5.89 -104.51 -0.62 -2.00 16 3 C -0.06 -0.93 9.21 -39.22 -0.36 -1.29 16 4 C -0.12 -2.15 5.52 -104.95 -0.58 -2.73 16 5 C 0.55 11.12 7.47 -12.41 -0.09 11.03 16 6 O -0.57 -12.30 15.99 5.30 0.08 -12.21 16 7 N -0.58 -11.29 2.50 -168.64 -0.42 -11.71 16 8 C 0.21 4.44 4.42 -5.19 -0.02 4.41 16 9 C -0.54 -11.88 6.25 -34.44 -0.22 -12.09 16 10 H 0.07 1.61 5.31 -52.49 -0.28 1.33 16 11 C 0.07 1.63 5.41 -17.82 -0.10 1.54 16 12 N -0.88 -21.55 13.29 55.43 0.74 -20.81 16 13 Si 0.89 18.48 29.54 -169.99 -5.02 13.46 16 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 15 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 C 0.18 3.08 3.01 -67.93 -0.20 2.87 16 18 H 0.09 1.65 6.91 -51.93 -0.36 1.30 16 19 C -0.16 -2.51 7.55 37.16 0.28 -2.23 16 20 C -0.13 -2.29 4.33 -90.58 -0.39 -2.68 16 21 C -0.20 -2.76 9.95 -26.73 -0.27 -3.03 16 22 C -0.16 -2.59 9.50 -26.69 -0.25 -2.84 16 23 C -0.08 -1.40 7.42 -39.22 -0.29 -1.69 16 24 C -0.12 -1.99 9.63 -39.47 -0.38 -2.37 16 25 C 0.14 2.17 6.27 -83.59 -0.52 1.64 16 26 N -0.32 -4.69 3.11 -11.77 -0.04 -4.73 16 27 C 0.26 3.37 12.32 -90.33 -1.11 2.25 16 28 N -0.55 -7.32 11.19 -15.73 -0.18 -7.50 16 29 C 0.19 2.40 13.03 -91.76 -1.20 1.20 16 30 N -0.31 -4.49 11.08 29.30 0.32 -4.16 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.79 7.20 -51.93 -0.37 0.42 16 33 H 0.07 0.74 8.05 -51.92 -0.42 0.33 16 34 H 0.14 2.09 7.88 -52.49 -0.41 1.68 16 35 H 0.06 1.33 4.20 -51.92 -0.22 1.11 16 36 H 0.04 0.83 6.45 -51.93 -0.33 0.50 16 37 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 38 H 0.07 1.27 5.83 -51.93 -0.30 0.97 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.80 7.18 -51.93 -0.37 0.43 16 41 H 0.11 2.12 6.22 -51.93 -0.32 1.79 16 42 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.10 1.45 5.82 -51.93 -0.30 1.14 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.21 4.25 3.25 -52.49 -0.17 4.08 16 47 H 0.13 2.01 8.04 -52.49 -0.42 1.58 16 48 H 0.22 2.01 8.06 -52.49 -0.42 1.59 16 49 H 0.22 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -26.94 391.29 -10.99 -37.92 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.37 Total: 12.83 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -6.00 Total: -8.98 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.43 Total: -48.91 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -26.94 -10.99 -37.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401867.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.570 kcal (2) G-P(sol) polarization free energy of solvation -26.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds