Wall clock time and date at job start Tue Mar 31 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99737 * 2 1 4 4 H 1.48499 * 109.47499 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46958 * 120.00396 * 3 2 1 7 7 C 1.38790 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00619 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99646 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00032 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47235 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.46845 * 110.99919 * 293.95232 * 13 12 11 15 15 C 1.53038 * 109.52247 * 174.16089 * 14 13 12 16 16 C 1.53117 * 109.28071 * 59.17804 * 15 14 13 17 17 C 1.53126 * 109.16018 * 302.34862 * 16 15 14 18 18 H 1.08997 * 109.50172 * 297.71077 * 17 16 15 19 19 C 1.50706 * 109.50029 * 177.59155 * 17 16 15 20 20 O 1.21281 * 119.99490 * 258.07231 * 19 17 16 21 21 N 1.34768 * 119.99944 * 78.07781 * 19 17 16 22 22 C 1.44575 * 118.64425 * 184.42148 * 21 19 17 23 23 C 1.54313 * 109.90850 * 270.85392 * 22 21 19 24 24 C 1.47090 * 110.29490 * 288.75655 * 23 22 21 25 25 C 1.52566 * 114.32775 * 62.73224 * 24 23 22 26 26 C 1.50882 * 109.35347 * 274.97951 * 25 24 23 27 27 C 1.47610 * 118.64680 * 4.68723 * 21 19 17 28 28 C 1.46844 * 111.00153 * 169.74117 * 13 12 11 29 29 H 0.96999 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47239 * 59.99926 * 10 9 7 31 31 H 1.08999 * 109.47431 * 300.00462 * 10 9 7 32 32 H 1.09001 * 109.47556 * 60.00381 * 11 10 9 33 33 H 1.08999 * 109.47467 * 300.00047 * 11 10 9 34 34 H 1.08994 * 109.47021 * 59.99782 * 12 11 10 35 35 H 1.09003 * 109.46916 * 299.99789 * 12 11 10 36 36 H 1.09007 * 109.46256 * 54.14827 * 14 13 12 37 37 H 1.08996 * 109.45226 * 294.17009 * 14 13 12 38 38 H 1.08998 * 109.50409 * 299.23862 * 15 14 13 39 39 H 1.09001 * 109.53484 * 179.13941 * 15 14 13 40 40 H 1.08997 * 109.52539 * 182.43833 * 16 15 14 41 41 H 1.09009 * 109.51884 * 62.24874 * 16 15 14 42 42 H 1.09000 * 109.45082 * 30.76454 * 22 21 19 43 43 H 1.09005 * 109.45382 * 150.68187 * 22 21 19 44 44 H 1.09001 * 109.39855 * 168.46405 * 23 22 21 45 45 H 1.08996 * 109.13837 * 48.88784 * 23 22 21 46 46 H 1.08999 * 108.51454 * 301.47870 * 24 23 22 47 47 H 1.09004 * 108.51098 * 183.98809 * 24 23 22 48 48 H 1.09001 * 109.48966 * 155.01643 * 25 24 23 49 49 H 1.08996 * 109.49288 * 34.94431 * 25 24 23 50 50 H 1.08996 * 109.37104 * 331.69452 * 26 25 24 51 51 H 1.09001 * 109.36541 * 212.07614 * 26 25 24 52 52 H 1.08996 * 108.94969 * 258.55898 * 27 21 19 53 53 H 1.09004 * 108.94179 * 17.18169 * 27 21 19 54 54 H 1.09004 * 109.45803 * 65.81904 * 28 13 12 55 55 H 1.09005 * 109.46328 * 305.85865 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6966 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8913 -0.0005 11 6 1.9794 -5.3241 0.0001 12 6 3.1515 -6.3076 0.0008 13 7 2.6364 -7.6834 0.0008 14 6 1.9301 -7.9808 1.2534 15 6 1.2845 -9.3652 1.1602 16 6 2.3708 -10.4134 0.9036 17 6 3.1230 -10.0536 -0.3807 18 1 2.4337 -10.0766 -1.2247 19 6 4.2326 -11.0475 -0.6090 20 8 5.3775 -10.7504 -0.3406 21 7 3.9528 -12.2662 -1.1116 22 6 5.0237 -13.2304 -1.2283 23 6 5.7173 -13.0821 -2.5988 24 6 4.8356 -13.5666 -3.6718 25 6 3.5347 -12.7832 -3.8182 26 6 2.5097 -13.3317 -2.8564 27 6 2.5667 -12.5597 -1.5257 28 6 3.7152 -8.6493 -0.2428 29 1 -0.4850 0.8400 0.0004 30 1 3.1245 -3.7313 0.8894 31 1 3.1245 -3.7313 -0.8904 32 1 1.3706 -5.4846 -0.8897 33 1 1.3710 -5.4840 0.8903 34 1 3.7600 -6.1471 0.8907 35 1 3.7602 -6.1480 -0.8893 36 1 1.1576 -7.2304 1.4217 37 1 2.6382 -7.9654 2.0818 38 1 0.5663 -9.3774 0.3404 39 1 0.7731 -9.5926 2.0955 40 1 1.9107 -11.3953 0.7934 41 1 3.0676 -10.4285 1.7418 42 1 5.7537 -13.0597 -0.4370 43 1 4.6173 -14.2375 -1.1353 44 1 6.6409 -13.6609 -2.6017 45 1 5.9498 -12.0310 -2.7697 46 1 4.5907 -14.6101 -3.4739 47 1 5.3786 -13.5153 -4.6156 48 1 3.1644 -12.8805 -4.8388 49 1 3.7163 -11.7318 -3.5956 50 1 2.7152 -14.3861 -2.6716 51 1 1.5153 -13.2299 -3.2910 52 1 2.0841 -13.1547 -0.7504 53 1 2.0246 -11.6207 -1.6378 54 1 4.4149 -8.6305 0.5929 55 1 4.2395 -8.3844 -1.1611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095405398.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:15 Heat of formation + Delta-G solvation = -77.502271 kcal Electronic energy + Delta-G solvation = -29794.800794 eV Core-core repulsion = 25955.693037 eV Total energy + Delta-G solvation = -3839.107757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.208 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.78607 -39.86044 -38.44688 -36.08621 -34.89924 -34.60303 -33.59137 -32.85419 -31.99288 -28.12132 -27.88321 -27.18790 -26.44490 -25.01908 -24.01888 -22.98085 -21.97093 -21.38388 -20.84476 -19.60923 -19.51337 -18.29910 -17.48324 -16.96324 -16.89514 -16.65462 -16.53707 -16.05851 -15.60113 -15.51461 -15.43729 -15.17242 -15.06195 -14.77249 -14.60910 -14.38243 -14.23012 -13.97701 -13.70907 -13.52230 -13.39861 -13.23935 -13.09009 -12.98236 -12.87422 -12.65477 -12.52583 -12.39125 -12.22525 -12.13217 -11.91118 -11.69324 -11.61318 -11.54951 -11.47683 -11.43128 -11.29137 -11.23092 -11.13159 -10.61820 -10.32251 -9.62784 -9.35576 -8.65926 -8.37185 -6.13224 1.30821 1.40266 1.46840 1.55944 1.73265 1.99774 2.28228 2.85318 2.96645 3.32492 3.46953 3.67553 3.73153 3.80537 3.92160 3.97600 4.03591 4.05579 4.10391 4.14125 4.21708 4.25693 4.30226 4.37729 4.42549 4.46859 4.55778 4.58088 4.66441 4.70109 4.72536 4.73395 4.74907 4.79913 4.83829 4.92979 4.95169 4.98047 5.07056 5.09868 5.14589 5.20266 5.22483 5.25810 5.28631 5.30471 5.37719 5.39356 5.41234 5.46065 5.72871 6.02076 6.10131 6.17902 6.33140 7.04789 7.16338 8.71910 Molecular weight = 354.21amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.001667 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.396445 B =16788.352303 C =17096.596729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.071 0.929 9 S -0.190 6.190 10 C -0.090 4.090 11 C -0.077 4.077 12 C 0.070 3.930 13 N -0.535 5.535 14 C 0.042 3.958 15 C -0.107 4.107 16 C -0.101 4.101 17 C -0.097 4.097 18 H 0.119 0.881 19 C 0.513 3.487 20 O -0.585 6.585 21 N -0.596 5.596 22 C 0.116 3.884 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.127 4.127 27 C 0.096 3.904 28 C 0.079 3.921 29 H 0.272 0.728 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.070 0.930 49 H 0.043 0.957 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.088 0.912 53 H 0.092 0.908 54 H 0.024 0.976 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 -34.783 -3.749 35.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.689 4.689 8 H 0.089 0.911 9 S 0.038 5.962 10 C -0.239 4.239 11 C -0.116 4.116 12 C -0.060 4.060 13 N -0.260 5.260 14 C -0.086 4.086 15 C -0.144 4.144 16 C -0.139 4.139 17 C -0.118 4.118 18 H 0.137 0.863 19 C 0.302 3.698 20 O -0.465 6.465 21 N -0.328 5.328 22 C -0.007 4.007 23 C -0.169 4.169 24 C -0.154 4.154 25 C -0.157 4.157 26 C -0.165 4.165 27 C -0.025 4.025 28 C -0.049 4.049 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.089 0.911 49 H 0.061 0.939 50 H 0.098 0.902 51 H 0.112 0.888 52 H 0.106 0.894 53 H 0.110 0.890 54 H 0.042 0.958 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.454 -34.807 -3.999 35.206 hybrid contribution 2.695 1.785 0.606 3.289 sum 6.149 -33.022 -3.393 33.760 Atomic orbital electron populations 1.70139 1.07594 1.28617 1.47852 1.26051 0.96064 1.03039 0.93764 0.85087 0.77972 0.76191 0.79288 1.19003 1.19776 1.19051 1.23017 0.94712 0.92172 1.59014 0.91114 1.84560 1.13727 1.00862 1.97019 1.23167 1.00267 0.97811 1.02690 1.21127 0.97632 0.89869 1.02965 1.21977 0.95845 0.87333 1.00832 1.61893 1.26852 1.01585 1.35637 1.22316 0.97842 0.99210 0.89233 1.21560 0.97442 0.91734 1.03694 1.21518 0.97364 1.00545 0.94478 1.21337 0.96091 0.92196 1.02187 0.86310 1.20944 0.89554 0.83236 0.76099 1.90679 1.24026 1.78140 1.53645 1.47790 1.10853 1.12661 1.61455 1.21357 0.89376 0.92945 0.97056 1.21051 0.99431 1.00756 0.95624 1.20457 0.96127 1.00568 0.98239 1.21081 0.95409 0.99219 0.99985 1.21773 1.00591 1.00331 0.93781 1.22396 0.80166 1.02325 0.97645 1.21721 0.91694 0.91096 1.00437 0.91918 0.92350 0.92073 0.91141 0.91500 0.95102 0.90704 0.90362 0.95615 0.89878 0.89288 0.88601 0.93001 0.92196 0.88091 0.90268 0.94668 0.90610 0.92716 0.91123 0.93852 0.90249 0.88814 0.89428 0.89015 0.95809 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 2 C 0.02 0.92 5.49 84.86 0.47 1.38 16 3 Si 0.99 44.59 29.55 68.60 2.03 46.61 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.90 9.50 67.95 0.65 -31.26 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.19 -10.30 21.44 -56.49 -1.21 -11.52 16 10 C -0.09 -3.73 5.67 71.98 0.41 -3.33 16 11 C -0.08 -2.56 5.15 30.59 0.16 -2.40 16 12 C 0.07 1.97 4.96 86.31 0.43 2.40 16 13 N -0.54 -13.10 4.65 -896.35 -4.17 -17.27 16 14 C 0.04 0.90 5.29 86.33 0.46 1.36 16 15 C -0.11 -1.57 6.09 30.65 0.19 -1.39 16 16 C -0.10 -1.42 5.18 30.68 0.16 -1.27 16 17 C -0.10 -1.71 1.86 -11.49 -0.02 -1.73 16 18 H 0.12 1.75 6.17 -2.39 -0.01 1.73 16 19 C 0.51 10.58 6.79 87.66 0.60 11.18 16 20 O -0.58 -17.36 15.48 -3.03 -0.05 -17.40 16 21 N -0.60 -8.27 2.25 -819.29 -1.84 -10.12 16 22 C 0.12 1.54 5.30 87.18 0.46 2.00 16 23 C -0.13 -1.76 5.72 29.20 0.17 -1.60 16 24 C -0.12 -1.14 5.15 28.61 0.15 -1.00 16 25 C -0.12 -1.14 5.51 29.76 0.16 -0.98 16 26 C -0.13 -0.67 5.71 30.22 0.17 -0.50 16 27 C 0.10 0.68 5.10 86.49 0.44 1.12 16 28 C 0.08 1.89 4.20 86.32 0.36 2.25 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.21 6.44 -2.39 -0.02 2.19 16 34 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 35 H 0.07 2.10 7.98 -2.39 -0.02 2.08 16 36 H 0.08 1.81 6.22 -2.38 -0.01 1.80 16 37 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 0.85 7.22 -2.39 -0.02 0.83 16 41 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.06 1.06 7.37 -2.39 -0.02 1.05 16 43 H 0.10 0.78 8.06 -2.38 -0.02 0.76 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.08 0.50 7.36 -2.39 -0.02 0.49 16 47 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 49 H 0.04 0.62 7.48 -2.39 -0.02 0.60 16 50 H 0.08 0.28 7.32 -2.39 -0.02 0.26 16 51 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 52 H 0.09 0.32 8.05 -2.39 -0.02 0.30 16 53 H 0.09 0.62 5.39 -2.39 -0.01 0.61 16 54 H 0.02 0.66 7.89 -2.38 -0.02 0.64 16 55 H 0.06 1.68 8.01 -2.38 -0.02 1.66 16 Total: -1.00 -73.82 423.49 1.27 -72.55 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.83 Total: 15.77 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 5.40 Total: -23.76 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -5.73 Total: -82.26 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -1.21 Total: -11.52 kcal Total: -73.82 1.27 -72.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095405398.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.951 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds