Wall clock time and date at job start Tue Mar 31 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47199 * 2 1 4 4 C 1.46506 * 120.00016 * 270.00056 * 3 2 1 5 5 C 1.50696 * 109.46771 * 269.99931 * 4 3 2 6 6 H 1.07999 * 120.00352 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00036 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99743 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00324 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47173 * 59.99731 * 9 7 5 11 11 H 1.48501 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47262 * 299.99474 * 9 7 5 13 13 C 1.34778 * 120.00039 * 89.99767 * 3 2 1 14 14 O 1.21281 * 120.00178 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99830 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.47148 * 179.97438 * 15 13 3 17 17 C 1.39371 * 120.00221 * 179.72201 * 16 15 13 18 18 C 1.39093 * 119.94700 * 359.72986 * 17 16 15 19 19 C 1.37775 * 120.04471 * 179.75859 * 18 17 16 20 20 C 1.39497 * 119.95432 * 0.53574 * 19 18 17 21 21 C 1.48163 * 120.05659 * 179.69715 * 20 19 18 22 22 N 1.32675 * 119.23610 * 179.75139 * 21 20 19 23 23 C 1.32174 * 120.73370 * 179.75746 * 22 21 20 24 24 C 1.38708 * 119.20523 * 0.50882 * 23 22 21 25 25 C 1.38669 * 118.57712 * 359.74680 * 24 23 22 26 26 C 1.50703 * 120.39506 * 179.97438 * 25 24 23 27 27 N 1.32194 * 119.21323 * 359.97438 * 25 24 23 28 28 C 1.39510 * 119.90010 * 359.72042 * 20 19 18 29 29 C 1.37774 * 119.94674 * 359.97438 * 28 20 19 30 30 H 1.08998 * 109.47135 * 300.00066 * 1 2 3 31 31 H 1.08999 * 109.47121 * 60.00563 * 1 2 3 32 32 H 1.09008 * 109.46901 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47135 * 239.99934 * 2 1 3 34 34 H 1.09003 * 109.46783 * 120.00104 * 2 1 3 35 35 H 1.08999 * 109.47187 * 29.99784 * 4 3 2 36 36 H 1.08998 * 109.46682 * 149.99985 * 4 3 2 37 37 H 0.97001 * 119.99850 * 180.02562 * 8 7 5 38 38 H 1.09001 * 109.47545 * 60.00214 * 15 13 3 39 39 H 1.08998 * 109.47669 * 300.00156 * 15 13 3 40 40 H 0.97005 * 119.99811 * 0.02562 * 16 15 13 41 41 H 1.07997 * 119.97405 * 359.97438 * 18 17 16 42 42 H 1.08000 * 120.02669 * 180.27640 * 19 18 17 43 43 H 1.07993 * 120.39642 * 180.22888 * 23 22 21 44 44 H 1.08004 * 120.71156 * 179.72419 * 24 23 22 45 45 H 1.09004 * 109.47005 * 270.02281 * 26 25 24 46 46 H 1.09002 * 109.47337 * 30.01499 * 26 25 24 47 47 H 1.08993 * 109.47676 * 150.01972 * 26 25 24 48 48 H 1.07999 * 120.02428 * 179.97438 * 28 20 19 49 49 H 1.07997 * 119.97565 * 179.97438 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1265 -3.6176 9 14 5.9139 2.0974 -3.4162 10 1 6.1418 0.6408 -3.5941 11 1 6.1613 2.7974 -4.7024 12 1 6.8410 2.6208 -2.3810 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3101 2.2033 3.5858 17 6 2.1502 1.7671 4.8998 18 6 1.6835 0.4815 5.1527 19 6 1.5294 0.0465 6.4509 20 6 1.8312 0.9002 7.5120 21 6 1.6600 0.4370 8.9089 22 7 1.9566 1.2608 9.9057 23 6 1.8104 0.8801 11.1630 24 6 1.3512 -0.4006 11.4333 25 6 1.0554 -1.2378 10.3681 26 6 0.5543 -2.6375 10.6147 27 7 1.2182 -0.7935 9.1337 28 6 2.2941 2.1911 7.2560 29 6 2.4526 2.6198 5.9562 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5818 1.6877 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 3.6756 3.5170 -4.4435 38 1 2.6228 0.4187 2.5299 39 1 0.9445 1.0113 2.5302 40 1 2.6276 3.1026 3.4086 41 1 1.4451 -0.1774 4.3309 42 1 1.1713 -0.9534 6.6469 43 1 2.0500 1.5563 11.9701 44 1 1.2270 -0.7386 12.4515 45 1 1.4012 -3.3208 10.6777 46 1 -0.0042 -2.6639 11.5505 47 1 -0.0966 -2.9402 9.7946 48 1 2.5279 2.8539 8.0760 49 1 2.8105 3.6191 5.7575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095410311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:12 Heat of formation + Delta-G solvation = 38.501028 kcal Electronic energy + Delta-G solvation = -29475.892150 eV Core-core repulsion = 25402.830378 eV Total energy + Delta-G solvation = -4073.061772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25197 -39.73453 -38.88422 -35.83263 -35.25628 -34.60504 -33.03282 -32.76954 -31.01856 -30.24912 -29.93235 -28.74211 -27.78902 -26.15466 -24.33136 -23.46385 -23.10902 -22.64298 -22.15110 -20.92452 -18.70587 -17.81659 -17.69661 -17.06143 -16.50706 -16.19397 -15.92712 -15.77987 -15.39429 -15.28417 -14.94796 -14.69657 -14.28552 -13.96077 -13.74641 -13.61427 -13.55608 -13.48455 -13.32359 -13.25780 -12.85310 -12.74896 -12.59142 -12.10827 -12.08290 -11.97485 -11.67708 -11.27046 -11.09415 -10.98716 -10.97859 -10.89462 -10.81149 -10.59573 -10.48462 -10.19717 -9.73013 -9.47090 -9.43390 -9.15019 -8.97997 -8.48394 -7.81805 -7.35311 -6.09769 -4.14988 0.33865 0.84605 1.47527 1.70413 3.17834 3.24637 3.28841 3.33495 3.37382 3.45734 3.57907 3.84329 3.90994 4.03396 4.17838 4.40144 4.66616 4.79424 4.83228 4.89054 4.97697 5.00446 5.10822 5.12553 5.17984 5.24894 5.32031 5.37352 5.41122 5.43657 5.50158 5.55874 5.60566 5.68731 5.71281 5.95506 6.02413 6.07155 6.15489 6.26326 6.37489 6.41159 6.57789 6.73357 6.83983 6.94106 7.26229 7.34815 7.42352 7.74317 7.85594 7.90588 8.15922 8.26026 8.76717 8.92786 9.50207 10.98260 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.001699 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.179700 B =16472.557239 C =17001.955854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.500 3.500 14 O -0.538 6.538 15 C 0.100 3.900 16 N -0.721 5.721 17 C 0.253 3.747 18 C -0.217 4.217 19 C -0.014 4.014 20 C -0.130 4.130 21 C 0.386 3.614 22 N -0.526 5.526 23 C 0.157 3.843 24 C -0.253 4.253 25 C 0.181 3.819 26 C -0.107 4.107 27 N -0.522 5.522 28 C -0.015 4.015 29 C -0.210 4.210 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.414 0.586 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.167 0.833 44 H 0.143 0.857 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 -10.871 27.610 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.286 3.714 14 O -0.416 6.416 15 C -0.029 4.029 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.240 4.240 19 C -0.034 4.034 20 C -0.135 4.135 21 C 0.124 3.876 22 N -0.241 5.241 23 C -0.009 4.009 24 C -0.275 4.275 25 C 0.034 3.966 26 C -0.164 4.164 27 N -0.238 5.238 28 C -0.035 4.035 29 C -0.233 4.233 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.253 0.747 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.184 0.816 44 H 0.161 0.839 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.151 0.849 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.302 -9.980 26.288 29.052 hybrid contribution 0.991 -0.169 0.475 1.112 sum -6.311 -10.149 26.763 29.310 Atomic orbital electron populations 1.22231 0.96513 1.01673 1.02441 1.21492 0.93710 0.83920 1.03014 1.48229 1.63064 1.13363 1.07534 1.19315 0.96435 0.93650 0.77828 1.21372 0.96823 1.32220 1.06425 0.92485 1.24934 0.97918 0.94837 0.96352 1.69921 1.35757 1.33204 1.14338 0.86546 0.84671 0.78283 0.77851 1.20219 1.21140 1.20177 1.20141 0.79015 0.87085 0.85206 1.90669 1.46169 1.18019 1.86753 1.21271 1.01794 0.93759 0.86033 1.44615 1.71394 1.17624 1.01405 1.18065 0.90394 0.92737 0.84361 1.20598 1.10548 0.95647 0.97199 1.20956 0.92973 0.98770 0.90718 1.17710 1.12292 0.95837 0.87665 1.21361 0.87992 0.84860 0.93385 1.68397 1.18442 1.36999 1.00218 1.23179 0.90054 0.93804 0.93905 1.22680 1.06478 0.96904 1.01418 1.21697 0.90154 0.96610 0.88181 1.20789 1.01988 0.90337 1.03302 1.68247 1.16089 1.15915 1.23506 1.20942 0.92456 0.94010 0.96097 1.20545 1.10745 1.00679 0.91330 0.93019 0.91911 0.91914 0.89572 0.91598 0.94761 0.93814 0.92601 0.89454 0.89497 0.74716 0.85559 0.84940 0.81605 0.83883 0.89700 0.90205 0.89868 0.84872 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.72 2.46 -175.06 -0.43 -12.15 16 4 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.50 9.73 7.74 -10.99 -0.09 9.64 16 14 O -0.54 -12.75 15.25 5.56 0.08 -12.67 16 15 C 0.10 1.40 3.93 -5.19 -0.02 1.38 16 16 N -0.72 -10.24 5.69 -59.79 -0.34 -10.58 16 17 C 0.25 3.28 6.65 -83.80 -0.56 2.72 16 18 C -0.22 -2.58 9.29 -39.43 -0.37 -2.94 16 19 C -0.01 -0.16 9.55 -39.28 -0.38 -0.54 16 20 C -0.13 -1.65 5.88 -104.88 -0.62 -2.27 16 21 C 0.39 4.84 7.55 -156.89 -1.18 3.66 16 22 N -0.53 -6.07 9.45 -11.16 -0.11 -6.18 16 23 C 0.16 1.30 11.30 -17.23 -0.19 1.10 16 24 C -0.25 -1.81 9.85 -39.25 -0.39 -2.19 16 25 C 0.18 1.58 6.82 -82.28 -0.56 1.02 16 26 C -0.11 -0.55 10.22 36.01 0.37 -0.18 16 27 N -0.52 -6.06 9.38 -7.42 -0.07 -6.13 16 28 C -0.01 -0.18 9.55 -39.28 -0.38 -0.55 16 29 C -0.21 -2.58 9.87 -39.44 -0.39 -2.97 16 30 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 35 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.09 1.10 7.22 -51.93 -0.38 0.73 16 39 H 0.09 1.04 6.96 -51.93 -0.36 0.68 16 40 H 0.41 6.36 7.44 -40.82 -0.30 6.05 16 41 H 0.13 1.29 6.70 -52.49 -0.35 0.94 16 42 H 0.13 1.44 7.50 -52.49 -0.39 1.04 16 43 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.13 1.49 7.50 -52.49 -0.39 1.09 16 49 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 412.28 15.07 6.21 6.21 Total: -1.00 -34.18 412.28 -10.81 -44.99 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.04 Total: 4.79 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -4.84 Total: 0.50 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.21 Total: -60.42 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.18 -10.81 -44.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095410311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.489 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds