Wall clock time and date at job start Tue Mar 31 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34725 * 117.00310 * 2 1 4 4 O 1.21498 * 120.00234 * 0.02562 * 3 2 1 5 5 C 1.47544 * 119.99924 * 180.02562 * 3 2 1 6 6 N 1.31854 * 126.47303 * 0.02562 * 5 3 2 7 7 N 1.28474 * 110.12723 * 179.97438 * 6 5 3 8 8 C 1.46500 * 124.92676 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47248 * 90.02972 * 8 7 6 10 10 H 1.09001 * 109.46936 * 54.99147 * 9 8 7 11 11 C 1.47199 * 109.46661 * 294.99394 * 9 8 7 12 12 N 5.03549 * 140.35212 * 234.30097 * 2 1 3 13 13 C 1.52997 * 109.47017 * 174.99347 * 9 8 7 14 14 C 1.50700 * 109.47154 * 184.99420 * 13 9 8 15 15 H 1.08003 * 119.99496 * 0.02562 * 14 13 9 16 16 C 1.37879 * 120.00447 * 179.97438 * 14 13 9 17 17 N 1.31518 * 119.99344 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47164 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46620 * 120.00309 * 18 16 14 21 21 H 1.48499 * 109.47008 * 239.99912 * 18 16 14 22 22 C 1.35627 * 110.13895 * 0.02562 * 7 6 5 23 23 C 1.50696 * 126.42377 * 180.02562 * 22 7 6 24 24 C 1.35425 * 107.14762 * 359.97438 * 22 7 6 25 25 Br 1.89104 * 127.23476 * 179.97438 * 24 22 7 26 26 H 1.09002 * 109.46425 * 299.99810 * 1 2 3 27 27 H 1.09000 * 109.47236 * 59.99719 * 1 2 3 28 28 H 1.08997 * 109.47420 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46685 * 210.02560 * 8 7 6 30 30 H 1.09001 * 109.47298 * 330.02194 * 8 7 6 31 31 H 1.08991 * 109.47570 * 304.99955 * 13 9 8 32 32 H 1.09004 * 109.46904 * 65.00057 * 13 9 8 33 33 H 0.96999 * 119.99461 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.47282 * 89.99749 * 23 22 7 35 35 H 1.08999 * 109.46998 * 209.99944 * 23 22 7 36 36 H 1.09000 * 109.47637 * 329.99965 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2004 0.0000 4 8 1.4021 2.2194 0.0005 5 6 3.5372 1.2775 -0.0006 6 7 4.3753 0.2596 -0.0016 7 7 5.5876 0.6851 -0.0024 8 6 6.7768 -0.1704 -0.0030 9 6 7.1904 -0.4677 -1.4458 10 1 7.3288 0.4696 -1.9845 11 6 6.1395 -1.2612 -2.1037 12 7 5.3293 -1.8749 -2.6092 13 6 8.5016 -1.2560 -1.4483 14 6 8.9728 -1.4428 -2.8675 15 1 8.3949 -1.0392 -3.6858 16 6 10.1421 -2.1279 -3.1213 17 7 10.8459 -2.6189 -2.1247 18 14 10.7264 -2.3588 -4.8804 19 1 9.7634 -1.7159 -5.8102 20 1 12.0637 -1.7341 -5.0437 21 1 10.8169 -3.8092 -5.1856 22 6 5.6064 2.0413 -0.0013 23 6 6.8313 2.9191 -0.0023 24 6 4.3181 2.4585 -0.0004 25 35 3.6933 4.2434 0.0020 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 7.5916 0.3398 0.5107 30 1 6.5522 -1.1052 0.5106 31 1 9.2561 -0.7080 -0.8841 32 1 8.3405 -2.2307 -0.9878 33 1 11.6683 -3.1013 -2.3032 34 1 7.1253 3.1315 -1.0302 35 1 6.6089 3.8537 0.5126 36 1 7.6458 2.4070 0.5100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:19 Heat of formation + Delta-G solvation = 14.006243 kcal Electronic energy + Delta-G solvation = -22783.415758 eV Core-core repulsion = 19123.046426 eV Total energy + Delta-G solvation = -3660.369332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.032 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.95620 -40.17258 -37.11178 -36.45269 -34.55851 -33.33014 -33.28326 -31.64504 -30.27878 -28.43558 -27.25469 -26.89229 -24.93893 -22.99253 -22.09329 -21.03332 -20.21189 -17.58980 -17.27500 -17.07809 -16.73395 -16.58036 -16.10651 -15.76457 -14.68752 -14.22097 -14.01115 -13.77551 -13.47267 -13.39127 -13.38274 -12.92952 -12.66032 -12.47673 -12.27849 -12.22351 -11.97120 -11.66871 -11.31060 -11.21837 -11.17820 -10.97845 -10.95035 -10.86282 -10.71023 -10.56703 -9.94889 -9.93599 -9.51807 -9.23457 -8.81091 -8.61260 -6.25679 -4.29903 1.19083 1.45606 1.63171 2.23972 2.72089 2.98883 3.19540 3.28795 3.32961 3.42666 3.52051 4.17034 4.28012 4.33207 4.47479 4.69273 4.91475 4.97189 4.99735 5.07202 5.13417 5.17956 5.25341 5.38164 5.40362 5.56575 5.66462 5.78154 5.94412 6.06227 6.20537 6.51047 7.13550 7.24620 7.50305 7.68790 7.80766 8.01561 8.26751 8.73906 9.37165 10.84991 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.003118 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.711927 B = 8977.657000 C =10158.003005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.342 6.342 3 C 0.553 3.447 4 O -0.485 6.485 5 C 0.013 3.987 6 N -0.210 5.210 7 N -0.265 5.265 8 C 0.118 3.882 9 C -0.004 4.004 10 H 0.110 0.890 11 C 0.228 3.772 12 N -0.445 5.445 13 C 0.035 3.965 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.061 3.939 23 C -0.095 4.095 24 C -0.162 4.162 25 Br 0.009 6.991 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 13.496 9.297 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.257 6.257 3 C 0.395 3.605 4 O -0.370 6.370 5 C -0.146 4.146 6 N -0.046 5.046 7 N -0.055 5.055 8 C -0.002 4.002 9 C -0.027 4.027 10 H 0.128 0.872 11 C -0.089 4.089 12 N -0.121 5.121 13 C -0.004 4.004 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.066 4.066 23 C -0.153 4.153 24 C -0.252 4.252 25 Br 0.093 6.907 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.985 12.163 8.580 19.753 hybrid contribution 0.641 0.340 -0.854 1.120 sum -12.344 12.503 7.726 19.194 Atomic orbital electron populations 1.23312 0.75890 1.03876 1.02569 1.86668 1.23382 1.31822 1.83863 1.19461 0.86112 0.81897 0.73063 1.90897 1.65168 1.35641 1.45291 1.20395 0.91404 0.89552 1.13246 1.73854 0.89685 1.25507 1.15564 1.46080 1.05616 1.04786 1.48971 1.22604 0.82574 0.95662 0.99395 1.19616 0.93202 0.99159 0.90678 0.87245 1.28708 0.92789 0.93715 0.93734 1.81002 1.12027 1.09985 1.09040 1.19200 0.86729 0.95252 0.99221 1.21066 1.07639 1.36441 0.91663 0.92337 1.24926 0.96424 0.95004 0.97361 1.69928 1.15564 1.36328 1.30859 0.86506 0.78719 0.78132 0.84601 1.19639 1.20702 1.20840 1.21400 0.96360 0.84769 1.04038 1.20572 0.91968 0.98017 1.04740 1.21518 0.92963 0.92639 1.18054 1.96634 1.88615 1.07575 1.97908 0.91752 0.91726 0.87912 0.85463 0.86650 0.93748 0.94940 0.92620 0.88886 0.89123 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.34 -5.01 10.57 -40.56 -0.43 -5.44 16 3 C 0.55 8.70 7.96 34.53 0.27 8.98 16 4 O -0.49 -7.83 15.39 -19.26 -0.30 -8.13 16 5 C 0.01 0.21 7.16 -82.79 -0.59 -0.38 16 6 N -0.21 -3.40 11.63 33.41 0.39 -3.02 16 7 N -0.27 -3.62 3.09 -56.95 -0.18 -3.80 16 8 C 0.12 1.44 5.46 -4.04 -0.02 1.42 16 9 C 0.00 -0.06 2.42 -93.41 -0.23 -0.29 16 10 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 11 C 0.23 4.53 13.37 -20.79 -0.28 4.25 16 12 N -0.44 -9.83 18.53 42.12 0.78 -9.05 16 13 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 14 C -0.53 -13.02 8.60 -34.44 -0.30 -13.32 16 15 H 0.06 1.46 7.59 -52.48 -0.40 1.06 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -23.74 13.29 55.43 0.74 -23.01 16 18 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.06 0.74 6.94 -81.92 -0.57 0.17 16 23 C -0.10 -0.79 9.95 36.00 0.36 -0.43 16 24 C -0.16 -2.27 6.67 -39.31 -0.26 -2.53 16 25 Br 0.01 0.11 32.28 -68.01 -2.20 -2.08 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.13 1.09 6.97 -51.93 -0.36 0.73 16 30 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 36 H 0.09 0.55 7.02 -51.93 -0.36 0.19 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -31.95 347.55 -5.79 -37.75 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -4.05 Total: -5.21 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.77 Total: 1.48 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 1.73 Total: -38.86 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.73 Total: -13.57 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -2.20 Total: -2.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.95 -5.79 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.751 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds