Wall clock time and date at job start Tue Mar 31 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34735 * 117.00083 * 2 1 4 4 O 1.21494 * 119.99734 * 359.97438 * 3 2 1 5 5 C 1.47550 * 120.00076 * 179.72286 * 3 2 1 6 6 N 1.31861 * 126.47041 * 0.03045 * 5 3 2 7 7 N 1.28463 * 110.12440 * 179.97438 * 6 5 3 8 8 C 1.46500 * 124.93263 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46889 * 90.01996 * 8 7 6 10 10 H 1.08998 * 109.47136 * 305.00402 * 9 8 7 11 11 C 1.47196 * 109.47117 * 65.00271 * 9 8 7 12 12 N 7.20010 * 154.36128 * 303.92970 * 2 1 3 13 13 C 1.52999 * 109.46865 * 185.00501 * 9 8 7 14 14 C 1.50700 * 109.47251 * 175.00282 * 13 9 8 15 15 H 1.08007 * 119.99416 * 359.97438 * 14 13 9 16 16 C 1.37875 * 120.00440 * 180.02562 * 14 13 9 17 17 N 1.31507 * 119.99776 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47398 * 89.99510 * 18 16 14 20 20 H 1.48501 * 109.47282 * 210.00096 * 18 16 14 21 21 H 1.48502 * 109.46939 * 329.99835 * 18 16 14 22 22 C 1.35627 * 110.14253 * 359.97438 * 7 6 5 23 23 C 1.50701 * 126.43121 * 180.02562 * 22 7 6 24 24 C 1.35431 * 107.14691 * 359.75164 * 22 7 6 25 25 Br 1.89105 * 127.23873 * 180.25523 * 24 22 7 26 26 H 1.09002 * 109.46640 * 60.00109 * 1 2 3 27 27 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46967 * 299.99905 * 1 2 3 29 29 H 1.08994 * 109.47536 * 210.02346 * 8 7 6 30 30 H 1.09004 * 109.47008 * 330.02588 * 8 7 6 31 31 H 1.09005 * 109.47153 * 295.00050 * 13 9 8 32 32 H 1.08997 * 109.47312 * 55.00277 * 13 9 8 33 33 H 0.97003 * 120.00005 * 180.02562 * 17 16 14 34 34 H 1.09004 * 109.46624 * 90.00215 * 23 22 7 35 35 H 1.08992 * 109.47503 * 210.00451 * 23 22 7 36 36 H 1.09004 * 109.47215 * 330.01082 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2194 -0.0005 5 6 3.5372 1.2777 0.0062 6 7 4.3754 0.2598 0.0115 7 7 5.5874 0.6854 0.0154 8 6 6.7768 -0.1700 0.0223 9 6 7.1970 -0.4707 -1.4179 10 1 6.3550 -0.9014 -1.9596 11 6 7.6181 0.7764 -2.0767 12 7 7.9432 1.7390 -2.5850 13 6 8.3615 -1.4631 -1.4126 14 6 8.6951 -1.8537 -2.8294 15 1 8.1324 -1.4361 -3.6513 16 6 9.7177 -2.7448 -3.0763 17 7 10.4024 -3.2536 -2.0755 18 14 10.1316 -3.2283 -4.8325 19 1 11.1487 -2.2931 -5.3769 20 1 10.6710 -4.6118 -4.8511 21 1 8.9041 -3.1643 -5.6659 22 6 5.6063 2.0415 0.0123 23 6 6.8311 2.9195 0.0146 24 6 4.3179 2.4587 0.0004 25 35 3.6931 4.2435 -0.0159 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 7.5892 0.3414 0.5386 30 1 6.5499 -1.1036 0.5370 31 1 9.2322 -0.9992 -0.9491 32 1 8.0792 -2.3515 -0.8478 33 1 11.1222 -3.8803 -2.2492 34 1 7.1301 3.1288 -1.0125 35 1 6.6061 3.8557 0.5255 36 1 7.6432 2.4090 0.5325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:22 Heat of formation + Delta-G solvation = 17.781119 kcal Electronic energy + Delta-G solvation = -22811.484898 eV Core-core repulsion = 19151.279258 eV Total energy + Delta-G solvation = -3660.205641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.032 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.97460 -40.19861 -37.24015 -36.48296 -34.64666 -33.33921 -33.24852 -31.70094 -30.24188 -28.46466 -27.26045 -26.88461 -24.93277 -23.04433 -22.12541 -21.01359 -20.21955 -17.51509 -17.40366 -17.16852 -16.69251 -16.60247 -16.16290 -15.71652 -14.72557 -14.30089 -13.98472 -13.77848 -13.60102 -13.33220 -13.22274 -13.18447 -12.86072 -12.46364 -12.29738 -12.25881 -11.97544 -11.57339 -11.33217 -11.22699 -11.21584 -10.99538 -10.98101 -10.89012 -10.73070 -10.56410 -9.94599 -9.93801 -9.53982 -9.22336 -8.81077 -8.60833 -6.25467 -4.29914 1.16513 1.46049 1.62656 2.21786 2.69562 2.96733 3.20364 3.23484 3.28456 3.31715 3.33746 4.14995 4.27377 4.32869 4.39704 4.71005 4.87077 4.93904 4.97041 5.04953 5.08878 5.13475 5.36300 5.40859 5.44270 5.55851 5.65755 5.85912 5.93701 6.07710 6.17787 6.49765 7.15653 7.22581 7.48205 7.68231 7.78064 8.01286 8.07373 8.73366 9.37111 10.85148 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.003117 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.272441 B = 8980.763294 C =10135.907478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.342 6.342 3 C 0.554 3.446 4 O -0.484 6.484 5 C 0.014 3.986 6 N -0.210 5.210 7 N -0.265 5.265 8 C 0.119 3.881 9 C -0.008 4.008 10 H 0.115 0.885 11 C 0.230 3.770 12 N -0.450 5.450 13 C 0.036 3.964 14 C -0.532 4.532 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.064 3.936 23 C -0.102 4.102 24 C -0.161 4.161 25 Br 0.009 6.991 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 9.642 9.176 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.258 6.258 3 C 0.395 3.605 4 O -0.369 6.369 5 C -0.145 4.145 6 N -0.047 5.047 7 N -0.055 5.055 8 C -0.001 4.001 9 C -0.030 4.030 10 H 0.133 0.867 11 C -0.087 4.087 12 N -0.126 5.126 13 C -0.003 4.003 14 C -0.570 4.570 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.062 4.062 23 C -0.160 4.160 24 C -0.251 4.251 25 Br 0.093 6.907 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.124 10.669 8.456 19.617 hybrid contribution 0.163 -0.372 -0.879 0.968 sum -13.962 10.297 7.578 18.931 Atomic orbital electron populations 1.23315 0.75868 1.03886 1.02606 1.86651 1.23381 1.31781 1.83957 1.19432 0.86021 0.81914 0.73119 1.90904 1.65129 1.35689 1.45149 1.20372 0.91377 0.89487 1.13307 1.73778 0.89537 1.25417 1.15922 1.46055 1.05649 1.04727 1.49032 1.22587 0.82243 0.95981 0.99262 1.19690 1.03637 0.88780 0.90907 0.86712 1.28966 0.92512 0.93646 0.93557 1.81006 1.09911 1.13058 1.08669 1.19197 0.89736 0.92139 0.99237 1.21026 1.17566 1.26725 0.91638 0.92409 1.24916 0.95734 0.95659 0.97348 1.69913 1.21492 1.30467 1.30792 0.86558 0.78890 0.77901 0.84583 1.20547 1.20931 1.19676 1.21358 0.96308 0.84889 1.03679 1.20729 0.92032 0.98037 1.05228 1.21504 0.92885 0.92757 1.17944 1.96635 1.88458 1.07724 1.97889 0.91727 0.87849 0.91779 0.86888 0.85155 0.94997 0.93607 0.92550 0.88480 0.89103 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.34 -4.49 10.58 -40.59 -0.43 -4.92 16 3 C 0.55 8.21 7.96 34.53 0.28 8.48 16 4 O -0.48 -7.57 15.39 -19.26 -0.30 -7.86 16 5 C 0.01 0.22 7.16 -82.79 -0.59 -0.38 16 6 N -0.21 -3.18 11.98 33.41 0.40 -2.78 16 7 N -0.27 -3.66 3.19 -56.95 -0.18 -3.84 16 8 C 0.12 1.47 5.52 -4.04 -0.02 1.45 16 9 C -0.01 -0.12 2.42 -93.41 -0.23 -0.35 16 10 H 0.12 1.88 8.14 -51.93 -0.42 1.46 16 11 C 0.23 4.15 11.92 -20.76 -0.25 3.90 16 12 N -0.45 -8.68 16.73 42.15 0.71 -7.98 16 13 C 0.04 0.72 4.42 -27.88 -0.12 0.60 16 14 C -0.53 -13.13 8.60 -34.44 -0.30 -13.42 16 15 H 0.06 1.44 7.59 -52.48 -0.40 1.05 16 16 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -23.83 13.29 55.43 0.74 -23.10 16 18 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.06 0.88 6.36 -81.92 -0.52 0.36 16 23 C -0.10 -1.20 8.89 36.01 0.32 -0.88 16 24 C -0.16 -2.37 6.67 -39.31 -0.26 -2.63 16 25 Br 0.01 0.12 32.29 -68.01 -2.20 -2.07 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.11 1.15 6.97 -51.93 -0.36 0.79 16 30 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.10 1.32 6.04 -51.93 -0.31 1.01 16 35 H 0.09 0.91 7.91 -51.93 -0.41 0.50 16 36 H 0.08 0.81 7.02 -51.93 -0.36 0.45 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -30.06 341.07 -5.81 -35.87 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -3.94 Total: -3.92 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.73 Total: 0.13 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.66 Total: -37.70 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.73 Total: -12.78 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -2.20 Total: -2.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.06 -5.81 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.650 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds