Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30691 * 125.85349 * 2 1 4 4 C 1.33982 * 109.77574 * 180.25440 * 3 2 1 5 5 C 1.48389 * 125.64773 * 179.72496 * 4 3 2 6 6 C 1.39338 * 120.12054 * 0.02562 * 5 4 3 7 7 C 1.37981 * 119.90403 * 179.97438 * 6 5 4 8 8 C 1.38441 * 120.13520 * 359.97438 * 7 6 5 9 9 Br 1.89105 * 119.88124 * 179.97438 * 8 7 6 10 10 C 1.38358 * 120.23865 * 0.02562 * 8 7 6 11 11 C 1.38153 * 120.09716 * 359.74759 * 10 8 7 12 12 Cl 1.73599 * 120.07230 * 180.27296 * 11 10 8 13 13 N 1.31495 * 108.69876 * 359.73908 * 4 3 2 14 14 N 1.34516 * 125.85057 * 179.81079 * 2 1 3 15 15 C 1.46500 * 126.74097 * 0.02562 * 14 2 1 16 16 C 1.50696 * 109.46944 * 269.70738 * 15 14 2 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47035 * 60.00183 * 20 18 16 22 22 H 1.48503 * 109.46845 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47237 * 299.99939 * 20 18 16 24 24 H 1.09002 * 109.46835 * 270.18782 * 1 2 3 25 25 H 1.09000 * 109.47152 * 30.18423 * 1 2 3 26 26 H 1.08996 * 109.46976 * 150.18631 * 1 2 3 27 27 H 1.08007 * 120.05021 * 359.96149 * 6 5 4 28 28 H 1.07998 * 119.93216 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.95408 * 179.97438 * 10 8 7 30 30 H 1.09000 * 109.46609 * 149.70920 * 15 14 2 31 31 H 1.08999 * 109.46486 * 29.70999 * 15 14 2 32 32 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2724 1.0593 0.0000 4 6 3.5599 0.6882 -0.0056 5 6 4.7248 1.6074 -0.0132 6 6 4.5271 2.9867 -0.0145 7 6 5.6135 3.8373 -0.0210 8 6 6.8989 3.3230 -0.0257 9 35 8.3827 4.4954 -0.0354 10 6 7.1018 1.9544 -0.0245 11 6 6.0211 1.0938 -0.0133 12 17 6.2764 -0.6232 -0.0046 13 7 3.6200 -0.6253 -0.0036 14 7 2.2948 -1.0903 0.0036 15 6 1.8565 -2.4882 0.0077 16 6 1.7126 -2.9653 1.4299 17 1 1.9267 -2.2946 2.2488 18 6 1.3087 -4.2586 1.6856 19 7 1.0543 -5.0773 0.6883 20 14 1.1311 -4.8503 3.4485 21 1 0.1252 -4.0145 4.1521 22 1 0.6866 -6.2673 3.4526 23 1 2.4394 -4.7393 4.1421 24 1 -0.3633 0.0034 1.0277 25 1 -0.3633 0.8883 -0.5167 26 1 -0.3633 -0.8916 -0.5109 27 1 3.5250 3.3895 -0.0105 28 1 5.4609 4.9064 -0.0224 29 1 8.1065 1.5582 -0.0287 30 1 2.5947 -3.1019 -0.5085 31 1 0.8963 -2.5693 -0.5017 32 1 1.1468 -4.7702 -0.2271 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = 98.859239 kcal Electronic energy + Delta-G solvation = -20020.987266 eV Core-core repulsion = 16669.173506 eV Total energy + Delta-G solvation = -3351.813759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 354.978 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51653 -39.34483 -36.30942 -34.68933 -33.20907 -31.97283 -31.86258 -31.05134 -29.59356 -27.99067 -26.47672 -23.81283 -23.00782 -22.68350 -20.39739 -19.82801 -17.50487 -17.17326 -16.03375 -15.71488 -15.45388 -15.00797 -14.13181 -13.97916 -13.92636 -13.80386 -13.44736 -12.92937 -12.85806 -12.51224 -11.97073 -11.92351 -11.88437 -11.81408 -11.47722 -11.20297 -10.87967 -10.85661 -10.59384 -10.36513 -10.25583 -9.91117 -9.44074 -9.27852 -8.97891 -8.81875 -8.70531 -8.17288 -6.72729 -4.49515 0.55156 0.96813 1.27117 2.24875 2.30345 3.00177 3.07450 3.29226 3.31862 3.50309 3.77573 4.09126 4.29726 4.52128 4.71380 4.90599 5.00716 5.02920 5.13371 5.36524 5.58140 5.65425 5.77601 5.81821 5.84703 6.07055 6.13430 6.37526 6.45943 6.52540 6.84093 7.00268 7.46693 7.51771 8.10784 8.43243 8.61545 9.19468 10.65077 Molecular weight = 354.98amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.002643 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.943254 B =10590.188933 C =11298.184168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.268 3.732 3 N -0.546 5.546 4 C 0.210 3.790 5 C 0.037 3.963 6 C -0.068 4.068 7 C -0.092 4.092 8 C -0.080 4.080 9 Br -0.045 7.045 10 C -0.087 4.087 11 C -0.016 4.016 12 Cl -0.019 7.019 13 N -0.270 5.270 14 N -0.327 5.327 15 C 0.244 3.756 16 C -0.618 4.618 17 H 0.059 0.941 18 C 0.030 3.970 19 N -0.897 5.897 20 Si 1.074 2.926 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.285 1.285 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.153 0.847 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 18.544 -2.914 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.007 4.007 3 N -0.277 5.277 4 C -0.069 4.069 5 C 0.033 3.967 6 C -0.089 4.089 7 C -0.112 4.112 8 C -0.160 4.160 9 Br 0.040 6.960 10 C -0.108 4.108 11 C -0.046 4.046 12 Cl 0.011 6.989 13 N -0.101 5.101 14 N -0.116 5.116 15 C 0.125 3.875 16 C -0.657 4.657 17 H 0.077 0.923 18 C -0.176 4.176 19 N -0.532 5.532 20 Si 0.901 3.099 21 H -0.210 1.210 22 H -0.203 1.203 23 H -0.211 1.211 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.163 0.837 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.498 17.256 -2.009 20.298 hybrid contribution -0.014 0.682 -0.895 1.125 sum 10.484 17.938 -2.904 20.979 Atomic orbital electron populations 1.20258 0.84262 1.03804 1.04343 1.24056 0.96564 0.82633 0.97475 1.70231 1.00355 1.29822 1.27255 1.21744 0.91169 0.89625 1.04337 1.17502 0.87826 0.91826 0.99510 1.21225 1.00099 0.90713 0.96881 1.21104 0.90094 1.00784 0.99207 1.21705 0.92950 0.93262 1.08107 1.96722 1.39838 1.61715 1.97694 1.20866 0.98922 0.90742 1.00251 1.20979 0.93001 0.87515 1.03131 1.98452 1.96366 1.07989 1.96128 1.78613 0.98192 1.10069 1.23263 1.50888 1.02608 1.09462 1.48649 1.19857 0.95528 0.72036 1.00081 1.22081 1.52251 1.00801 0.90523 0.92261 1.25916 0.92808 0.92366 1.06524 1.70852 1.44409 1.37749 1.00169 0.83447 0.76937 0.76495 0.73033 1.21017 1.20314 1.21091 0.89269 0.89556 0.89964 0.82963 0.84039 0.83719 0.93599 0.93447 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.20 36.00 0.37 -0.66 16 2 C 0.27 5.33 7.97 -155.74 -1.24 4.09 16 3 N -0.55 -10.77 10.82 -8.56 -0.09 -10.86 16 4 C 0.21 4.21 7.72 -156.63 -1.21 3.00 16 5 C 0.04 0.61 5.88 -104.86 -0.62 -0.01 16 6 C -0.07 -0.89 9.68 -39.27 -0.38 -1.27 16 7 C -0.09 -1.00 9.77 -39.60 -0.39 -1.38 16 8 C -0.08 -0.90 6.23 -39.46 -0.25 -1.14 16 9 Br -0.05 -0.43 33.69 -68.01 -2.29 -2.72 16 10 C -0.09 -1.09 9.56 -39.57 -0.38 -1.46 16 11 C -0.02 -0.25 6.34 -39.17 -0.25 -0.50 16 12 Cl -0.02 -0.32 26.14 -51.86 -1.36 -1.68 16 13 N -0.27 -6.05 9.97 32.10 0.32 -5.73 16 14 N -0.33 -7.40 3.62 -59.53 -0.22 -7.61 16 15 C 0.24 5.89 5.36 -5.20 -0.03 5.86 16 16 C -0.62 -16.49 9.39 -34.44 -0.32 -16.82 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.03 0.80 5.46 -17.82 -0.10 0.70 16 19 N -0.90 -25.08 13.65 55.43 0.76 -24.33 16 20 Si 1.07 23.91 29.90 -169.99 -5.08 18.82 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.21 7.10 -51.93 -0.37 0.84 16 27 H 0.15 1.88 7.84 -52.48 -0.41 1.46 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.05 1.18 8.00 -51.93 -0.42 0.76 16 31 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 32 H 0.27 7.35 7.22 -40.82 -0.29 7.05 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -29.90 319.99 -10.67 -40.57 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -2.75 Total: -1.70 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -4.79 Total: -9.59 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.77 Total: -48.53 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.82 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.36 Total: -1.68 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.90 -10.67 -40.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.432 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds