Wall clock time and date at job start Tue Mar 31 2020 05:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36942 * 119.99823 * 2 1 4 4 H 1.07993 * 119.99751 * 204.14409 * 3 2 1 5 5 C 1.38816 * 119.99455 * 24.13945 * 3 2 1 6 6 N 1.31608 * 120.00501 * 14.93951 * 5 3 2 7 7 Si 1.86806 * 119.99568 * 194.92889 * 5 3 2 8 8 H 1.48505 * 109.46917 * 60.00354 * 7 5 3 9 9 H 1.48497 * 109.47121 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47106 * 300.00651 * 7 5 3 11 11 S 1.65600 * 120.00245 * 179.97438 * 2 1 3 12 12 O 1.42103 * 106.39938 * 23.22264 * 11 2 1 13 13 O 1.42104 * 106.40154 * 156.13644 * 11 2 1 14 14 C 1.76198 * 107.22062 * 269.67842 * 11 2 1 15 15 C 1.38256 * 119.99947 * 344.67547 * 14 11 2 16 16 C 1.38210 * 119.99835 * 179.76701 * 15 14 11 17 17 C 1.38256 * 120.00193 * 0.48489 * 16 15 14 18 18 N 1.48018 * 120.00456 * 179.77057 * 17 16 15 19 19 O 1.21799 * 119.99855 * 180.02562 * 18 17 16 20 20 O 1.21796 * 119.99614 * 0.02562 * 18 17 16 21 21 C 1.38223 * 119.99857 * 359.79224 * 17 16 15 22 22 C 1.38209 * 119.99756 * 164.94918 * 14 11 2 23 23 C 1.50700 * 120.00307 * 0.02562 * 22 14 11 24 24 F 1.39894 * 109.47186 * 174.08954 * 23 22 14 25 25 F 1.39902 * 109.46881 * 294.08472 * 23 22 14 26 26 F 1.39896 * 109.47411 * 54.08550 * 23 22 14 27 27 H 1.08997 * 109.47298 * 270.96506 * 1 2 3 28 28 H 1.08998 * 109.47383 * 30.96912 * 1 2 3 29 29 H 1.09011 * 109.46478 * 150.96635 * 1 2 3 30 30 H 0.97000 * 120.00381 * 179.97438 * 6 5 3 31 31 H 1.07994 * 119.99771 * 0.02562 * 15 14 11 32 32 H 1.07994 * 120.00497 * 180.25779 * 16 15 14 33 33 H 1.08001 * 120.00022 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1588 1.2269 -0.3826 5 6 1.5465 2.3355 0.4917 6 7 0.4527 2.2456 1.2180 7 14 2.2876 4.0101 0.1225 8 1 2.3218 4.2232 -1.3468 9 1 1.4613 5.0679 0.7575 10 1 3.6692 4.0701 0.6637 11 16 2.2931 -1.4341 0.0006 12 8 1.4088 -2.4082 -0.5364 13 8 3.5734 -1.1585 -0.5510 14 6 2.5621 -1.8804 1.6838 15 6 2.3918 -0.9409 2.6838 16 6 2.5982 -1.2923 4.0044 17 6 2.9846 -2.5805 4.3248 18 7 3.2105 -2.9554 5.7388 19 8 3.5514 -4.0902 6.0209 20 8 3.0555 -2.1292 6.6201 21 6 3.1604 -3.5182 3.3246 22 6 2.9489 -3.1680 2.0039 23 6 3.1410 -4.1903 0.9134 24 9 3.6582 -5.3678 1.4639 25 9 1.9102 -4.4609 0.3059 26 9 4.0329 -3.6911 -0.0418 27 1 -0.3634 0.0173 1.0275 28 1 -0.3634 0.8811 -0.5288 29 1 -0.3633 -0.8986 -0.4988 30 1 0.0315 3.0489 1.5619 31 1 2.0935 0.0663 2.4332 32 1 2.4611 -0.5596 4.7859 33 1 3.4627 -4.5244 3.5748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095939295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:50 Heat of formation + Delta-G solvation = -172.768730 kcal Electronic energy + Delta-G solvation = -30921.126828 eV Core-core repulsion = 25856.865794 eV Total energy + Delta-G solvation = -5064.261034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.038 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.10474 -47.68266 -47.39567 -42.27569 -39.45350 -36.66270 -36.20972 -35.97054 -34.65997 -32.70919 -32.10068 -31.81604 -26.86062 -26.81856 -26.28979 -23.96462 -22.96812 -22.24972 -19.75510 -19.02411 -18.86144 -18.38171 -18.32378 -17.93379 -17.63084 -17.20311 -16.97976 -16.42699 -15.49976 -15.02646 -14.78637 -14.69842 -14.38496 -14.18009 -13.96039 -13.73526 -13.68123 -13.59343 -13.51554 -13.20988 -13.00601 -12.82389 -12.16093 -11.84112 -11.68621 -11.59876 -11.34392 -11.33278 -11.25498 -11.22154 -10.92654 -10.90860 -10.54759 -10.43511 -10.26845 -9.91511 -9.68600 -9.60389 -8.55279 -7.07962 -4.50823 -0.37874 0.56097 1.14906 1.19356 1.30394 2.56646 2.88070 2.92361 2.93398 2.96817 3.56890 3.58911 3.90219 3.96300 4.26145 4.33122 4.41306 4.47381 4.56472 4.85324 5.00343 5.23877 5.41030 5.52150 5.64395 5.79654 6.10139 6.12689 6.34634 6.50266 6.71225 6.79426 6.99751 7.55762 7.82786 8.12099 8.62850 9.86054 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.010969 B = 0.005333 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.115688 B = 5248.754029 C = 7040.702943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.784 5.784 3 C -0.227 4.227 4 H 0.124 0.876 5 C 0.033 3.967 6 N -0.813 5.813 7 Si 0.935 3.065 8 H -0.263 1.263 9 H -0.276 1.276 10 H -0.262 1.262 11 S 2.454 3.546 12 O -0.979 6.979 13 O -0.961 6.961 14 C -0.553 4.553 15 C -0.030 4.030 16 C -0.043 4.043 17 C -0.031 4.031 18 N 0.030 4.970 19 O -0.159 6.159 20 O -0.153 6.153 21 C -0.035 4.035 22 C -0.114 4.114 23 C 0.488 3.512 24 F -0.175 7.175 25 F -0.138 7.138 26 F -0.162 7.162 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.286 0.714 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 -2.105 3.108 3.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.607 5.607 3 C -0.381 4.381 4 H 0.142 0.858 5 C -0.184 4.184 6 N -0.452 5.452 7 Si 0.758 3.242 8 H -0.187 1.187 9 H -0.201 1.201 10 H -0.187 1.187 11 S 2.547 3.453 12 O -0.968 6.968 13 O -0.950 6.950 14 C -0.622 4.622 15 C -0.049 4.049 16 C -0.063 4.063 17 C -0.113 4.113 18 N 0.551 4.449 19 O -0.375 6.375 20 O -0.370 6.370 21 C -0.055 4.055 22 C -0.117 4.117 23 C 0.433 3.567 24 F -0.156 7.156 25 F -0.119 7.119 26 F -0.143 7.143 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.198 0.802 32 H 0.181 0.819 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.442 -2.809 1.902 3.421 hybrid contribution 0.393 0.369 1.180 1.297 sum 0.835 -2.440 3.081 4.018 Atomic orbital electron populations 1.21467 0.78503 1.01353 1.01993 1.54553 1.13537 1.18962 1.73675 1.20362 1.02704 0.82891 1.32126 0.85824 1.25977 0.96366 1.01872 0.94139 1.70046 1.16798 1.32153 1.26188 0.85810 0.79545 0.78831 0.79984 1.18714 1.20100 1.18697 1.16186 0.75025 0.75639 0.78455 1.93443 1.64437 1.60948 1.77964 1.93412 1.41251 1.84041 1.76317 1.33647 0.97041 0.96993 1.34481 1.21298 0.93446 1.00839 0.89286 1.21491 0.92216 0.93433 0.99149 1.21022 1.12404 0.97029 0.80867 1.43551 0.97804 1.00477 1.03112 1.94538 1.48840 1.05852 1.88290 1.94537 1.54736 1.46402 1.41349 1.20757 0.93998 1.00455 0.90269 1.19501 1.05337 0.94201 0.92657 1.18413 0.75910 0.80479 0.81900 1.93166 1.87268 1.49798 1.85397 1.93427 1.40981 1.93838 1.83635 1.93332 1.68618 1.86791 1.65548 0.92662 0.90174 0.92774 0.90331 0.80242 0.81937 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.14 8.93 59.85 0.53 2.67 16 2 N -0.78 -16.23 2.50 -66.68 -0.17 -16.40 16 3 C -0.23 -4.71 8.63 -15.06 -0.13 -4.84 16 4 H 0.12 2.59 7.20 -52.49 -0.38 2.22 16 5 C 0.03 0.64 5.02 -17.43 -0.09 0.55 16 6 N -0.81 -15.80 10.92 55.49 0.61 -15.19 16 7 Si 0.93 15.48 29.58 -169.99 -5.03 10.45 16 8 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 9 H -0.28 -4.53 7.11 56.52 0.40 -4.12 16 10 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 11 S 2.45 53.41 4.16 -107.50 -0.45 52.96 16 12 O -0.98 -22.57 13.31 -57.17 -0.76 -23.33 16 13 O -0.96 -23.21 15.63 -57.17 -0.89 -24.10 16 14 C -0.55 -10.60 5.80 -39.59 -0.23 -10.83 16 15 C -0.03 -0.51 9.56 -39.58 -0.38 -0.88 16 16 C -0.04 -0.65 9.56 -39.58 -0.38 -1.03 16 17 C -0.03 -0.48 6.85 -79.95 -0.55 -1.03 16 18 N 0.03 0.48 4.45 33.96 0.15 0.63 16 19 O -0.16 -2.56 18.45 -29.46 -0.54 -3.10 16 20 O -0.15 -2.42 18.45 -29.46 -0.54 -2.97 16 21 C -0.04 -0.56 8.94 -39.58 -0.35 -0.91 16 22 C -0.11 -2.07 5.38 -104.62 -0.56 -2.63 16 23 C 0.49 9.03 2.80 36.01 0.10 9.13 16 24 F -0.17 -2.78 15.99 2.25 0.04 -2.74 16 25 F -0.14 -2.73 14.28 2.25 0.03 -2.70 16 26 F -0.16 -3.26 14.87 2.25 0.03 -3.23 16 27 H 0.05 1.02 7.55 -51.93 -0.39 0.63 16 28 H 0.08 1.51 7.19 -51.93 -0.37 1.13 16 29 H 0.05 0.99 7.00 -51.92 -0.36 0.63 16 30 H 0.29 5.20 8.31 -40.82 -0.34 4.87 16 31 H 0.18 3.06 6.69 -52.49 -0.35 2.71 16 32 H 0.16 2.02 7.61 -52.49 -0.40 1.62 16 33 H 0.16 2.27 6.73 -52.49 -0.35 1.91 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -24.62 313.68 -6.58 -31.20 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -1.75 Total: 3.60 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.03 Total: -9.80 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.59 Total: -30.96 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -2.74 Total: -53.49 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.10 Total: -8.67 kcal Atomic # 14 Polarization: 15.48 SS G_CDS: -5.03 Total: 10.45 kcal Atomic # 16 Polarization: 53.41 SS G_CDS: -0.45 Total: 52.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -24.62 -6.58 -31.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.572 kcal (2) G-P(sol) polarization free energy of solvation -24.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds