Wall clock time and date at job start Tue Mar 31 2020 05:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00077 * 2 1 4 4 H 1.07996 * 120.00045 * 200.61758 * 3 2 1 5 5 C 1.38807 * 119.99799 * 20.61639 * 3 2 1 6 6 N 1.31617 * 120.00247 * 14.76144 * 5 3 2 7 7 Si 1.86804 * 120.00034 * 194.76236 * 5 3 2 8 8 H 1.48496 * 109.47399 * 85.00158 * 7 5 3 9 9 H 1.48502 * 109.47413 * 205.01048 * 7 5 3 10 10 H 1.48506 * 109.46796 * 325.00399 * 7 5 3 11 11 S 1.65596 * 120.00001 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40292 * 156.45994 * 11 2 1 13 13 O 1.42101 * 106.40447 * 23.53980 * 11 2 1 14 14 C 1.76201 * 107.22130 * 269.99744 * 11 2 1 15 15 C 1.38794 * 119.96208 * 89.99527 * 14 11 2 16 16 C 1.36177 * 120.77568 * 180.02562 * 15 14 11 17 17 C 1.40966 * 120.42755 * 0.25761 * 16 15 14 18 18 N 1.34666 * 129.69431 * 179.72524 * 17 16 15 19 19 C 1.27926 * 117.85093 * 179.97438 * 18 17 16 20 20 C 1.50701 * 124.24218 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46803 * 60.02509 * 20 19 18 22 22 C 1.52999 * 109.47357 * 180.02562 * 20 19 18 23 23 C 1.53001 * 109.46975 * 300.02847 * 20 19 18 24 24 S 1.70660 * 111.52117 * 359.50121 * 19 18 17 25 25 C 1.39920 * 118.50448 * 359.45666 * 17 16 15 26 26 C 1.37651 * 119.96981 * 269.98069 * 14 11 2 27 27 H 1.08994 * 109.46881 * 275.00365 * 1 2 3 28 28 H 1.08994 * 109.47062 * 34.99975 * 1 2 3 29 29 H 1.08997 * 109.46898 * 154.99861 * 1 2 3 30 30 H 0.97007 * 119.99991 * 179.97438 * 6 5 3 31 31 H 1.08001 * 119.61369 * 359.97438 * 15 14 11 32 32 H 1.07999 * 119.79027 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47321 * 60.00120 * 21 20 19 34 34 H 1.09005 * 109.47184 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47316 * 300.00057 * 21 20 19 36 36 H 1.09000 * 109.46932 * 59.99899 * 22 20 19 37 37 H 1.08996 * 109.46711 * 179.97438 * 22 20 19 38 38 H 1.08999 * 109.46752 * 299.99871 * 22 20 19 39 39 H 1.09007 * 109.47289 * 59.99320 * 23 20 19 40 40 H 1.08996 * 109.47394 * 179.97438 * 23 20 19 41 41 H 1.09000 * 109.47184 * 300.00021 * 23 20 19 42 42 H 1.08000 * 120.02105 * 0.04276 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1778 1.2159 -0.3293 5 6 1.5223 2.3495 0.4233 6 7 0.3895 2.2813 1.0898 7 14 2.2858 4.0123 0.0469 8 1 1.8715 4.4517 -1.3097 9 1 1.8276 5.0061 1.0507 10 1 3.7657 3.9010 0.1006 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5450 13 8 1.4113 -2.4063 -0.5455 14 6 2.5539 -1.8866 1.6822 15 6 1.6151 -2.6657 2.3440 16 6 1.7997 -3.0247 3.6446 17 6 2.9489 -2.6049 4.3448 18 7 3.3145 -2.8426 5.6189 19 6 4.4204 -2.3451 6.0261 20 6 4.9667 -2.5196 7.4198 21 6 5.1750 -4.0086 7.7031 22 6 6.3039 -1.7858 7.5390 23 6 3.9756 -1.9416 8.4320 24 16 5.2061 -1.4698 4.7895 25 6 3.8943 -1.8248 3.6699 26 6 3.6886 -1.4673 2.3390 27 1 -0.3633 0.0896 1.0237 28 1 -0.3633 0.8418 -0.5894 29 1 -0.3633 -0.9314 -0.4343 30 1 -0.0488 3.0945 1.3859 31 1 0.7274 -2.9905 1.8217 32 1 1.0588 -3.6310 4.1443 33 1 5.8810 -4.4204 6.9819 34 1 5.5697 -4.1349 8.7113 35 1 4.2223 -4.5314 7.6181 36 1 6.1555 -0.7250 7.3371 37 1 6.6987 -1.9117 8.5472 38 1 7.0099 -2.1976 6.8179 39 1 3.0229 -2.4643 8.3470 40 1 4.3704 -2.0681 9.4400 41 1 3.8272 -0.8808 8.2301 42 1 4.4183 -0.8606 1.8234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095939307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:58 Heat of formation + Delta-G solvation = -19.425308 kcal Electronic energy + Delta-G solvation = -27041.575565 eV Core-core repulsion = 23240.239801 eV Total energy + Delta-G solvation = -3801.335764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 354.086 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.24855 -37.93813 -35.91352 -35.77678 -35.55030 -34.48374 -31.60448 -30.82505 -29.34701 -27.69401 -27.50368 -26.55440 -24.99688 -23.60161 -22.94890 -21.67042 -19.47087 -18.62818 -18.23614 -17.36551 -16.79725 -16.21923 -15.97676 -15.38928 -15.09062 -14.73868 -14.58486 -14.16218 -14.05228 -13.95957 -13.56944 -13.28232 -13.19734 -12.70117 -12.58166 -12.38323 -12.25950 -11.96820 -11.93172 -11.76894 -11.69574 -11.49148 -11.22702 -11.15337 -11.10926 -11.05339 -10.81713 -10.70059 -10.60616 -10.31309 -10.22977 -9.97320 -9.92079 -9.49997 -9.39976 -8.54782 -8.21126 -7.90213 -6.68277 -4.11796 0.43551 1.34229 1.48780 1.66225 1.85951 2.40720 3.05830 3.10223 3.13942 3.73263 3.79554 3.92457 4.40598 4.49007 4.63517 4.67118 4.69340 4.88485 5.02801 5.12592 5.29090 5.36467 5.39027 5.49531 5.57114 5.59457 5.63245 5.66878 5.72255 5.83241 5.84618 6.01296 6.04637 6.08525 6.31774 6.36828 6.39642 6.62957 6.77935 6.99662 7.01107 7.13379 7.33371 7.71539 8.15570 8.52365 8.99111 10.27141 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.003509 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.983570 B = 7978.376473 C = 8996.633098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.800 5.800 3 C -0.240 4.240 4 H 0.119 0.881 5 C 0.031 3.969 6 N -0.829 5.829 7 Si 0.930 3.070 8 H -0.270 1.270 9 H -0.280 1.280 10 H -0.262 1.262 11 S 2.525 3.475 12 O -0.983 6.983 13 O -0.997 6.997 14 C -0.635 4.635 15 C -0.025 4.025 16 C -0.093 4.093 17 C 0.105 3.895 18 N -0.468 5.468 19 C 0.099 3.901 20 C 0.008 3.992 21 C -0.134 4.134 22 C -0.155 4.155 23 C -0.134 4.134 24 S 0.095 5.905 25 C -0.204 4.204 26 C 0.029 3.971 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.277 0.723 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -4.322 12.323 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.623 5.623 3 C -0.389 4.389 4 H 0.136 0.864 5 C -0.182 4.182 6 N -0.468 5.468 7 Si 0.755 3.245 8 H -0.195 1.195 9 H -0.205 1.205 10 H -0.187 1.187 11 S 2.621 3.379 12 O -0.973 6.973 13 O -0.987 6.987 14 C -0.715 4.715 15 C -0.047 4.047 16 C -0.114 4.114 17 C -0.015 4.015 18 N -0.181 5.181 19 C -0.186 4.186 20 C 0.004 3.996 21 C -0.193 4.193 22 C -0.213 4.213 23 C -0.193 4.193 24 S 0.352 5.648 25 C -0.323 4.323 26 C 0.006 3.994 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.698 -4.801 12.098 14.638 hybrid contribution -0.606 0.553 0.516 0.969 sum 6.092 -4.248 12.613 14.637 Atomic orbital electron populations 1.21376 0.79073 1.00170 1.02192 1.54346 1.13302 1.18770 1.75906 1.20120 1.00472 0.82842 1.35460 0.86356 1.25788 0.96563 1.01143 0.94713 1.70115 1.15884 1.30357 1.30441 0.85862 0.79987 0.79974 0.78697 1.19523 1.20508 1.18657 1.12039 0.73889 0.74762 0.77190 1.93348 1.41483 1.84618 1.77855 1.93338 1.65209 1.61690 1.78443 1.32754 0.99821 1.06749 1.32149 1.20407 0.97778 0.93302 0.93220 1.20369 0.95353 1.01540 0.94172 1.19195 0.96469 0.97911 0.87875 1.66054 1.15269 1.22842 1.13950 1.26743 0.93706 0.97634 1.00521 1.19326 0.95545 0.97809 0.86955 1.21842 1.02808 0.92966 1.01638 1.22024 0.95303 1.00777 1.03158 1.21845 0.98950 1.01188 0.97332 1.83764 1.22998 1.54978 1.03034 1.24005 0.99760 1.07754 1.00763 1.20108 0.95539 0.93992 0.89784 0.92703 0.90718 0.93375 0.91261 0.84045 0.85040 0.92431 0.91548 0.91422 0.91560 0.90655 0.91648 0.91403 0.91556 0.92320 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.56 8.94 59.85 0.53 3.10 16 2 N -0.80 -18.78 3.31 -66.69 -0.22 -19.00 16 3 C -0.24 -5.78 9.45 -15.06 -0.14 -5.93 16 4 H 0.12 2.83 7.16 -52.49 -0.38 2.45 16 5 C 0.03 0.72 5.07 -17.43 -0.09 0.63 16 6 N -0.83 -19.56 10.67 55.49 0.59 -18.97 16 7 Si 0.93 18.07 29.58 -169.99 -5.03 13.04 16 8 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 9 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 10 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 11 S 2.52 58.33 5.65 -107.50 -0.61 57.72 16 12 O -0.98 -24.64 16.06 -57.17 -0.92 -25.56 16 13 O -1.00 -24.02 15.83 -57.17 -0.90 -24.92 16 14 C -0.63 -13.48 5.97 -39.59 -0.24 -13.72 16 15 C -0.03 -0.49 9.42 -40.12 -0.38 -0.87 16 16 C -0.09 -1.67 10.05 -39.29 -0.39 -2.07 16 17 C 0.11 1.98 7.00 -84.96 -0.59 1.39 16 18 N -0.47 -7.91 10.52 -9.08 -0.10 -8.01 16 19 C 0.10 1.42 5.71 -13.90 -0.08 1.34 16 20 C 0.01 0.08 0.99 -155.66 -0.15 -0.08 16 21 C -0.13 -1.24 8.44 37.16 0.31 -0.93 16 22 C -0.15 -1.30 7.51 37.16 0.28 -1.02 16 23 C -0.13 -1.30 8.44 37.16 0.31 -0.98 16 24 S 0.09 1.43 21.40 -107.50 -2.30 -0.87 16 25 C -0.20 -3.89 6.56 -38.54 -0.25 -4.14 16 26 C 0.03 0.60 9.54 -39.39 -0.38 0.22 16 27 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 28 H 0.07 1.63 7.22 -51.93 -0.37 1.25 16 29 H 0.05 0.97 6.91 -51.93 -0.36 0.61 16 30 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 31 H 0.14 2.49 7.60 -52.49 -0.40 2.09 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.14 2.80 7.60 -52.49 -0.40 2.41 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -29.36 370.46 -10.78 -40.14 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.63 Total: 3.89 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -1.26 Total: -23.04 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.28 Total: -45.98 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -1.82 Total: -50.49 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 59.76 SS G_CDS: -2.91 Total: 56.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.36 -10.78 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.718 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds